Table showing results for June 2025

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7TYA	26171	2025-06-08	2022-02-11	3.07	3.91	3.06	3.6	0.015	1.81	0.0	0.09	14.95	0.01	2.203	3.85	0.22	4.2	95.8	0.0	-2.07	0.69	0.89	4.04	3.6	0.003	0.56	0.0	0.04	13.80	0.00	2.331	3.91	0.45	2.5	97.5	0.0	2.38	1.18	0.68	0.89	3.30	8617	1032	16	0	14	59	0	logfile
✔	7WVX	32861	2025-06-06	2022-02-11	2.8	2.96	—	3.0	0.002	0.49	0.0	0.04	12.15	0.00	2.251	8.52	0.00	2.1	97.9	0.0	0.86	0.60	0.76	2.80	3.0	0.005	0.64	0.0	0.04	15.65	0.00	2.530	11.15	2.28	3.0	97.0	0.0	0.22	1.19	0.63	0.82	2.82	7070	920	5	0	0	0	0	logfile
✔	7WVW	32860	2025-06-06	2022-02-11	3.1	3.26	—	3.2	0.002	0.50	0.0	0.04	13.51	0.00	2.197	9.35	0.00	1.5	98.5	0.0	0.78	0.62	0.77	2.19	3.2	0.004	0.62	0.0	0.04	15.86	0.00	2.413	11.45	2.47	3.2	96.8	0.0	0.71	1.19	0.64	0.83	2.46	7169	924	5	0	0	0	0	logfile
✔	7WVU	32858	2025-06-06	2022-02-11	3.3	3.40	—	3.4	0.002	0.47	0.0	0.04	13.25	0.00	2.221	8.52	0.00	2.3	97.7	0.0	0.98	0.58	0.72	1.55	3.4	0.003	0.59	0.0	0.04	15.44	0.00	2.591	9.78	3.56	3.2	96.8	0.0	0.53	1.13	0.61	0.79	2.14	6862	909	5	0	0	0	0	logfile
✔	7R5V	14341	2025-06-17	2022-02-11	4.55	4.79	—	4.5	0.003	0.68	1.0	0.04	16.53	0.00	2.168	14.18	0.21	2.8	97.2	0.0	1.11	0.82	0.76	—	4.5	0.003	0.64	0.0	0.04	17.17	0.00	2.074	12.48	0.00	2.6	97.4	0.0	1.32	0.97	0.82	0.78	—	18507	2138	13	63	0	0	0	logfile
✔	7R5S	14336	2025-06-24	2022-02-11	2.83	3.61	—	3.0	0.003	0.51	0.0	0.04	16.18	0.00	1.653	7.48	0.82	2.6	97.3	0.1	-0.67	0.84	0.76	2.20	3.0	0.003	0.67	0.0	0.04	17.76	0.00	2.428	6.30	1.10	2.7	97.3	0.0	2.09	0.54	0.89	0.88	2.13	26871	3126	18	82	0	1	0	logfile
✔	7TY4	26165	2025-06-08	2022-02-11	2.99	4.05	2.87	3.6	0.013	1.80	0.0	0.09	14.46	0.01	2.215	4.91	0.45	5.9	94.0	0.1	-2.69	0.69	0.86	4.04	3.6	0.003	0.74	0.0	0.04	14.73	0.00	2.520	6.32	1.45	2.3	97.7	0.0	1.83	0.59	0.68	0.86	2.10	8636	1030	8	0	14	72	0	logfile
✔	7TY8	26169	2025-06-08	2022-02-11	3.18	4.02	3.18	3.6	0.013	1.78	0.0	0.08	14.15	0.01	2.407	7.84	0.78	5.1	94.9	0.0	-3.38	0.64	0.79	2.33	3.7	0.003	0.67	0.0	0.04	15.11	0.00	2.534	9.36	1.90	2.3	97.7	0.0	1.45	1.29	0.63	0.79	2.26	8591	1030	8	0	16	29	0	logfile
✔	7TY7	26168	2025-06-08	2022-02-11	3.37	4.32	3.31	3.9	0.013	1.81	0.0	0.09	13.97	0.01	2.304	4.20	0.45	5.7	94.3	0.0	-3.03	0.66	0.83	2.76	3.9	0.003	0.68	0.0	0.04	14.24	0.00	2.536	7.49	1.67	2.6	97.4	0.0	1.99	1.63	0.65	0.84	2.31	8538	1032	8	0	15	20	0	logfile
✔	7R5M	14331	2025-06-10	2022-02-11	3.3	3.09	3.20	3.2	0.006	0.94	0.0	0.06	14.64	0.00	2.411	1.26	0.80	4.6	95.4	0.0	-0.79	0.70	0.80	2.46	3.1	0.003	0.84	1.0	0.04	16.05	0.00	2.410	2.69	1.83	1.4	98.6	0.0	1.73	1.35	0.69	0.85	2.09	11295	1491	9	0	0	0	0	logfile
✔	7WVY	32862	2025-06-06	2022-02-11	3.0	2.82	—	3.0	0.003	0.51	0.0	0.04	12.97	0.00	2.251	9.20	0.13	1.9	98.1	0.0	0.72	0.59	0.73	2.50	3.0	0.004	0.62	0.0	0.04	15.57	0.00	2.571	9.84	2.67	2.2	97.8	0.0	0.68	0.53	0.61	0.80	2.84	7094	922	5	0	0	0	0	logfile
✔	7WV9	32850	2025-06-07	2022-02-10	3.36	3.51	—	3.6	0.004	0.73	0.0	0.05	16.05	0.00	2.206	11.96	0.53	5.0	94.9	0.1	-0.80	0.57	0.67	1.09	3.6	0.004	0.63	0.0	0.04	16.34	0.00	2.523	11.33	3.20	5.4	94.6	0.0	-0.84	0.95	0.60	0.72	0.77	8848	1141	6	0	2	0	0	logfile
✘	7WVE	32851	2025-06-11	2022-02-10	3.11	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	12498	1318	4	46	46	0	0	logfile
✔	7TXZ	26162	2025-06-10	2022-02-10	3.2	3.25	3.11	3.2	0.017	1.52	0.0	0.10	9.78	0.01	2.400	0.32	0.19	1.9	98.0	0.1	0.71	0.71	0.79	4.26	3.2	0.003	0.64	0.0	0.05	13.00	0.00	2.537	5.55	1.97	2.8	97.1	0.1	0.37	0.52	0.72	0.84	3.91	11303	1464	22	0	29	0	0	logfile
✔	7WVQ	32857	2025-06-25	2022-02-10	4.04	4.06	—	4.0	0.007	1.05	6.0	0.07	9.79	0.01	2.339	3.72	0.46	5.2	94.6	0.2	-3.46	0.66	0.50	—	2.5	0.003	0.72	0.0	0.05	11.35	0.00	2.373	13.80	0.03	4.3	95.7	0.0	-1.22	0.99	0.71	0.61	—	29527	3741	4	0	0	0	0	logfile
✔	7R5H	14320	2025-06-06	2022-02-10	2.59	2.63	2.45	21.0	0.011	1.85	4.0	0.11	11.92	0.01	2.519	0.67	0.00	3.2	96.8	0.0	-1.94	0.42	0.84	6.46	21.0	0.002	0.55	0.0	0.05	16.23	0.00	2.618	1.61	2.88	4.7	95.3	0.0	-2.21	1.15	0.42	0.88	5.48	7440	477	6	0	0	0	3786	logfile
✔	7WVN	32854	2025-06-21	2022-02-10	3.4	2.96	—	3.5	0.006	0.83	0.0	0.05	8.23	0.01	2.348	1.91	0.11	3.7	96.2	0.1	-3.13	0.72	0.68	1.19	3.5	0.004	0.75	0.0	0.05	14.66	0.00	2.393	8.78	2.24	2.9	97.1	0.0	-0.33	1.19	0.79	0.79	1.53	24805	3162	3	0	0	0	0	logfile
✘	7WVF	32852	2025-06-12	2022-02-10	3.91	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	14249	1546	5	46	46	0	0	logfile
✘	7WVJ	32853	2025-06-11	2022-02-10	3.26	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	12488	1318	4	46	46	0	0	logfile
✔	7WVP	32856	2025-06-25	2022-02-10	3.7	3.43	—	3.8	0.005	0.85	2.0	0.06	13.45	0.01	2.335	3.35	0.40	3.9	95.9	0.1	-4.59	0.70	0.59	0.30	3.8	0.004	0.81	1.0	0.05	15.90	0.00	2.291	14.23	2.92	4.6	95.4	0.0	-1.53	1.53	0.75	0.68	0.51	29601	3750	4	0	0	0	0	logfile

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