Table showing results for June 2025

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7WVQ	32857	2025-06-25	2022-02-10	4.04	4.06	—	4.0	0.007	1.05	6.0	0.07	9.79	0.01	2.339	3.72	0.46	5.2	94.6	0.2	-3.46	0.66	0.50	—	2.5	0.003	0.72	0.0	0.05	11.35	0.00	2.373	13.80	0.03	4.3	95.7	0.0	-1.22	0.99	0.71	0.61	—	29527	3741	4	0	0	0	0	logfile
✘	7WV5	32846	2025-06-11	2022-02-09	3.1	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	12958	1318	16	46	80	0	0	logfile
✔	7WUR	32839	2025-06-07	2022-02-09	3.5	4.22	—	3.7	0.003	0.68	0.0	0.04	14.34	0.00	2.211	11.28	0.31	7.6	92.4	0.0	-1.48	0.79	0.85	2.51	3.7	0.004	0.71	0.0	0.04	15.19	0.00	2.521	9.34	1.23	7.2	92.8	0.0	-1.06	0.40	0.79	0.85	2.51	8922	1134	6	0	0	0	0	logfile
✔	7WUT	32841	2025-06-08	2022-02-09	3.5	4.38	—	3.9	0.003	0.83	0.0	0.05	16.78	0.00	2.139	13.93	0.20	13.3	86.4	0.3	-1.82	0.86	0.78	1.34	3.9	0.003	0.84	0.0	0.05	17.51	0.00	2.611	11.55	2.93	13.0	86.7	0.3	-1.67	0.31	0.86	0.77	1.38	9732	1264	4	0	0	0	0	logfile
✔	7TXT	26160	2025-06-12	2022-02-09	3.0	3.54	—	3.4	0.007	0.53	0.0	0.04	12.67	0.00	2.064	8.27	0.00	2.6	97.4	0.0	0.25	0.70	0.86	4.50	3.4	0.004	0.56	0.0	0.04	14.94	0.00	2.433	7.19	0.93	2.7	97.3	0.0	0.62	0.55	0.62	0.87	4.19	12111	772	4	0	1	0	6018	logfile
✘	7TXV	26161	2025-06-23	2022-02-09	2.7	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	27648	3528	16	0	28	0	0	logfile
✔	7WUQ	32838	2025-06-10	2022-02-09	2.9	3.09	—	3.1	0.010	1.08	1.0	0.07	14.17	0.01	2.204	23.10	0.47	5.0	95.0	0.0	-3.00	0.58	0.72	2.29	3.1	0.004	0.68	0.0	0.04	16.61	0.00	2.474	16.75	3.73	4.6	95.4	0.0	-0.67	0.60	0.56	0.76	2.69	7973	1009	5	0	0	0	0	logfile
✔	7TXi	26158	2025-06-23	2022-02-09	3.5	3.86	—	3.7	0.026	0.99	0.0	0.05	12.09	0.01	1.269	13.97	0.00	5.7	93.8	0.5	1.39	0.53	0.82	2.16	3.6	0.004	0.85	1.0	0.05	15.70	0.01	1.025	9.89	2.97	6.4	93.1	0.5	0.66	1.68	0.54	0.83	2.13	28660	3920	20	0	0	0	0	logfile
✘	7WV3	32844	2025-06-21	2022-02-09	2.26	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	25386	2672	18	80	124	0	0	logfile
✔	7R4T	14316	2025-06-06	2022-02-09	2.75	2.72	2.60	2.8	0.011	1.77	0.0	0.09	11.86	0.01	2.520	0.00	0.00	3.8	96.2	0.0	-2.02	0.42	0.84	4.94	2.8	0.003	0.53	0.0	0.05	16.04	0.00	2.632	0.85	1.01	1.1	98.9	0.0	-1.44	2.20	0.42	0.89	6.23	7074	456	6	0	0	0	3606	logfile
✘	7WV4	32845	2025-06-21	2022-02-09	3.35	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	24490	2636	6	80	80	0	0	logfile
✔	7WUS	32840	2025-06-05	2022-02-09	3.4	3.78	—	3.8	0.003	0.75	0.0	0.05	17.11	0.00	2.275	11.90	1.00	8.6	91.4	0.0	-2.40	0.69	0.74	1.76	3.7	0.003	0.76	0.0	0.05	17.58	0.00	2.594	9.30	3.18	8.0	92.0	0.0	-1.66	0.63	0.69	0.76	1.56	5450	682	2	0	0	0	0	logfile
✔	7R4H	14312	2025-06-14	2022-02-08	2.34	3.05	2.43	2.9	0.006	1.22	1.0	0.06	19.22	0.01	2.119	5.33	3.93	3.7	96.3	0.0	-3.26	0.80	0.83	2.89	2.9	0.003	0.66	0.0	0.04	18.71	0.00	1.864	8.52	2.90	3.1	96.9	0.0	0.43	1.32	0.79	0.83	3.04	16485	2049	9	0	4	0	0	logfile
✔	7WUi	32836	2025-06-11	2022-02-08	3.1	2.72	—	3.1	0.016	1.16	0.0	0.07	13.96	0.01	2.221	25.88	0.29	4.3	95.7	0.0	-2.70	0.53	0.65	2.45	3.1	0.004	0.69	0.0	0.04	16.03	0.00	2.502	19.54	2.20	3.7	96.3	0.0	-1.10	0.58	0.57	0.74	2.55	9666	1225	7	0	0	0	0	logfile
✔	7WUJ	32837	2025-06-07	2022-02-08	3.3	3.09	—	3.1	0.007	1.01	0.0	0.06	13.92	0.01	2.219	18.92	0.51	7.1	92.9	0.0	-4.30	0.58	0.72	2.43	3.2	0.003	0.68	0.0	0.04	15.23	0.00	2.484	16.35	4.22	4.8	95.2	0.0	-1.16	0.53	0.57	0.72	1.30	8600	1209	6	0	0	0	0	logfile
✔	7WUG	32830	2025-06-15	2022-02-08	3.3	3.43	—	3.4	0.004	0.69	0.0	0.05	13.45	0.00	2.231	3.19	0.11	4.1	95.8	0.0	-0.52	0.79	0.86	2.55	3.4	0.004	0.57	0.0	0.04	15.03	0.00	2.431	3.86	1.46	3.4	96.6	0.0	1.18	0.27	0.79	0.88	2.18	17515	2239	5	0	0	0	0	logfile
✔	7TXD	26157	2025-06-18	2022-02-08	3.87	4.28	—	4.1	0.006	1.10	1.0	0.06	16.17	0.01	2.287	4.53	0.00	4.5	95.5	0.0	-2.19	0.81	0.77	1.64	4.1	0.004	0.74	0.0	0.04	14.46	0.00	2.308	9.33	2.19	4.6	95.4	0.0	-0.41	0.59	0.82	0.80	1.57	20555	2483	40	0	95	0	0	logfile
✔	7R40	14250	2025-06-26	2022-02-08	2.9	2.41	2.92	1.5	0.004	0.75	0.0	0.05	14.00	0.01	2.324	4.76	0.00	4.8	95.2	0.0	-2.66	0.68	0.63	1.24	1.5	0.004	0.79	0.0	0.05	15.85	0.01	2.448	11.41	2.05	6.0	94.0	0.0	-1.32	0.65	0.72	0.69	1.51	30615	3840	24	0	51	0	0	logfile
✔	7WU9	32824	2025-06-06	2022-02-07	3.375	3.51	3.21	3.4	0.002	0.42	0.0	0.04	13.28	0.00	2.137	6.33	0.00	3.0	97.0	0.0	1.21	0.71	0.82	3.04	3.4	0.003	0.64	0.0	0.04	15.60	0.00	2.497	5.83	2.87	2.6	97.4	0.0	0.81	0.77	0.68	0.84	2.09	7369	1030	5	0	0	0	0	logfile
✔	7TX6	26155	2025-06-04	2022-02-07	3.3	3.60	3.28	3.5	0.008	0.90	1.0	0.05	17.01	0.01	2.327	6.69	0.62	3.0	97.0	0.0	2.51	0.53	0.76	2.79	3.6	0.003	0.69	1.0	0.04	15.19	0.00	2.590	7.64	1.56	2.0	98.0	0.0	3.14	1.16	0.54	0.78	2.72	3169	398	2	0	2	0	0	logfile

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