Table showing results for June 2025

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7WU9	32824	2025-06-06	2022-02-07	3.375	3.51	3.21	3.4	0.002	0.42	0.0	0.04	13.28	0.00	2.137	6.33	0.00	3.0	97.0	0.0	1.21	0.71	0.82	3.04	3.4	0.003	0.64	0.0	0.04	15.60	0.00	2.497	5.83	2.87	2.6	97.4	0.0	0.81	0.77	0.68	0.84	2.09	7369	1030	5	0	0	0	0	logfile
✔	7TVZ	26142	2025-06-16	2022-02-06	3.6	3.77	—	3.8	0.005	0.61	0.0	0.04	14.94	0.00	2.203	4.11	0.00	2.8	97.2	0.0	0.35	0.68	0.75	2.02	3.8	0.003	0.62	0.0	0.04	15.87	0.00	2.514	4.90	1.55	2.8	97.2	0.0	0.62	2.30	0.71	0.80	1.96	18659	2340	7	0	9	8	0	logfile
✔	7TW2	26148	2025-06-11	2022-02-06	4.8	4.73	—	3.9	0.003	0.75	0.0	0.04	13.67	0.01	2.177	9.73	0.07	2.2	97.8	0.0	-1.27	0.66	0.72	—	3.8	0.005	0.77	0.0	0.04	13.94	0.00	2.425	14.44	0.07	4.4	95.6	0.0	0.68	1.65	0.67	0.77	—	12838	1619	4	0	2	0	0	logfile
✔	7TW3	26149	2025-06-19	2022-02-06	4.4	4.83	—	4.4	0.004	0.75	0.0	0.04	13.70	0.01	2.104	9.87	0.08	3.0	97.0	0.0	-1.98	0.76	0.76	—	4.4	0.003	0.65	0.0	0.04	13.64	0.00	2.505	7.49	0.00	2.9	97.1	0.0	0.57	1.24	0.76	0.77	—	22641	2944	4	0	0	0	0	logfile
✔	7TW0	26146	2025-06-16	2022-02-06	4.6	3.70	—	3.6	0.003	0.73	0.0	0.04	13.83	0.01	2.169	5.66	0.05	2.1	97.9	0.0	0.34	0.69	0.78	—	3.5	0.003	0.65	0.0	0.04	14.22	0.00	2.423	8.69	0.00	3.0	97.0	0.0	0.44	1.20	0.69	0.79	—	18266	2309	5	0	2	0	0	logfile
✔	7TW1	26147	2025-06-20	2022-02-06	4.6	3.99	—	3.7	0.003	0.74	0.0	0.05	13.82	0.00	2.117	7.55	0.08	2.5	97.5	0.0	-0.20	0.75	0.78	—	3.7	0.005	0.75	0.0	0.04	14.06	0.01	2.365	12.52	0.00	4.9	95.1	0.0	-0.46	1.17	0.75	0.79	—	23625	2993	4	0	0	0	0	logfile
✔	7WU2	32817	2025-06-06	2022-02-05	2.8	2.56	—	2.8	0.002	0.51	0.0	0.04	12.86	0.00	2.200	6.51	0.00	2.1	97.9	0.0	0.79	0.64	0.77	2.92	2.8	0.004	0.60	0.0	0.04	15.87	0.00	2.519	5.16	2.03	3.6	96.4	0.0	0.85	1.20	0.68	0.83	3.15	7829	1010	5	0	0	0	0	logfile
✔	7WTH	32786	2025-06-04	2022-02-04	4.3	3.63	—	4.0	0.004	0.78	0.0	0.05	12.97	0.01	2.169	9.08	0.85	8.0	92.0	0.0	-2.03	0.69	0.70	—	3.6	0.003	0.74	0.0	0.05	13.23	0.00	2.568	9.86	0.00	9.2	90.6	0.2	-2.19	1.19	0.69	0.71	—	3257	421	3	0	0	0	0	logfile
✔	7WT7	32770	2025-06-24	2022-02-04	3.4	3.87	—	3.8	0.005	0.95	15.0	0.06	14.36	0.01	2.132	9.81	0.91	7.1	92.6	0.3	-1.79	0.78	0.77	1.77	3.8	0.003	0.64	0.0	0.04	14.63	0.00	2.380	7.08	1.84	6.0	93.9	0.1	-1.10	1.16	0.77	0.77	1.55	28322	3523	12	0	50	0	0	logfile
✔	7WTi	32787	2025-06-27	2022-02-04	3.8	4.18	—	3.9	0.004	0.92	1.0	0.06	14.05	0.01	2.248	5.15	0.12	6.7	93.3	0.0	-2.60	0.82	0.76	1.66	3.9	0.007	0.79	0.0	0.05	15.27	0.01	2.314	13.32	1.91	9.5	90.5	0.0	-2.15	0.46	0.83	0.79	1.41	31536	3981	12	0	36	0	0	logfile
✔	7R21	14244	2025-06-29	2022-02-04	3.1	3.37	—	3.3	0.003	0.58	0.0	0.04	15.78	0.01	2.156	10.45	0.06	6.8	93.1	0.1	-0.81	0.74	0.81	1.81	3.3	0.003	0.59	0.0	0.04	17.43	0.00	2.431	7.92	2.41	7.0	92.9	0.0	-0.73	1.42	0.75	0.85	1.73	34980	4317	19	62	0	0	0	logfile
✔	7WTK	32789	2025-06-27	2022-02-04	3.6	3.91	—	3.7	0.006	1.03	14.0	0.07	17.39	0.01	1.732	9.94	1.20	8.0	91.5	0.5	-2.94	0.80	0.80	1.72	3.7	0.003	0.69	0.0	0.05	14.95	0.00	2.256	7.66	1.20	6.8	93.2	0.1	-1.55	1.56	0.80	0.79	1.30	31895	3975	30	0	70	0	0	logfile
✔	7WTD	32779	2025-06-23	2022-02-04	3.9	5.03	—	4.3	0.008	0.84	1.0	0.05	14.98	0.00	0.990	19.81	1.15	7.3	92.6	0.1	-0.88	0.81	0.61	0.10	4.4	0.003	0.80	1.0	0.05	16.59	0.00	2.318	14.94	2.75	6.8	93.2	0.0	-1.23	3.61	0.85	0.72	0.10	27137	3491	6	0	4	0	0	logfile
✔	7WTE	32780	2025-06-23	2022-02-04	3.3	4.21	—	3.5	0.005	0.74	2.0	0.05	15.11	0.00	1.040	11.76	1.95	6.5	93.4	0.1	-0.47	0.85	0.77	0.95	3.5	0.003	0.70	0.0	0.04	15.83	0.00	2.384	9.03	1.50	6.5	93.5	0.0	-0.25	1.27	0.87	0.81	0.59	27160	3493	6	0	4	0	0	logfile
✔	7WTC	32778	2025-06-25	2022-02-04	4.0	4.61	—	3.1	0.009	0.83	0.0	0.05	13.85	0.01	2.060	22.27	0.10	8.0	92.0	0.1	-0.78	0.86	0.65	—	3.1	0.003	0.77	0.0	0.05	16.09	0.00	2.390	18.16	2.19	7.6	92.3	0.1	-1.15	0.61	0.87	0.68	—	28418	3661	8	0	6	0	0	logfile
✔	7TVE	26140	2025-06-13	2022-02-04	3.8	4.04	—	4.0	0.005	0.86	0.0	0.05	19.05	0.00	2.213	17.42	3.26	13.4	86.3	0.3	-4.24	0.73	0.69	1.65	4.0	0.003	0.69	0.0	0.04	19.93	0.00	2.447	11.03	3.64	9.1	90.9	0.1	-1.43	0.76	0.75	0.73	0.96	15456	1793	8	54	1	0	0	logfile
✔	7WTG	32785	2025-06-04	2022-02-04	3.8	3.93	—	3.9	0.006	1.21	0.0	0.07	14.44	0.01	2.297	4.61	0.00	9.1	90.9	0.0	-2.94	0.67	0.73	2.60	3.9	0.004	0.83	0.0	0.05	16.39	0.01	2.462	11.22	2.50	10.0	89.7	0.2	-2.52	1.23	0.70	0.76	1.66	3318	425	3	0	0	0	0	logfile
✔	7WTB	32775	2025-06-25	2022-02-04	3.7	4.54	—	3.7	0.008	0.92	2.0	0.05	14.94	0.00	2.109	10.11	1.76	6.9	92.9	0.2	0.09	0.89	0.74	0.45	3.8	0.003	0.72	0.0	0.04	16.01	0.00	2.343	9.81	2.19	7.1	92.9	0.1	0.00	1.44	0.91	0.82	0.66	28480	3661	8	0	8	0	0	logfile
✔	7WTA	32773	2025-06-18	2022-02-04	3.9	6.12	—	3.5	0.009	0.82	0.0	0.04	13.25	0.00	2.171	19.58	0.00	8.2	91.8	0.0	-0.51	0.89	0.81	0.46	3.5	0.003	0.74	0.0	0.04	14.84	0.00	2.121	10.97	1.02	7.0	93.0	0.0	-0.29	0.42	0.89	0.81	0.46	21080	2736	8	0	4	0	0	logfile
✔	7TVi	26141	2025-06-12	2022-02-04	3.2	3.59	2.45	3.5	0.005	0.84	0.0	0.05	14.02	0.01	2.228	5.20	0.07	2.6	97.4	0.0	-0.83	0.67	0.67	0.72	3.5	0.004	0.76	0.0	0.05	16.21	0.00	2.442	7.96	2.91	2.9	97.1	0.0	-0.28	1.49	0.74	0.79	2.16	13746	1687	13	0	6	0	0	logfile

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