Table showing results for June 2025

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7WTG	32785	2025-06-04	2022-02-04	3.8	3.93	—	3.9	0.006	1.21	0.0	0.07	14.44	0.01	2.297	4.61	0.00	9.1	90.9	0.0	-2.94	0.67	0.73	2.60	3.9	0.004	0.83	0.0	0.05	16.39	0.01	2.462	11.22	2.50	10.0	89.7	0.2	-2.52	1.23	0.70	0.76	1.66	3318	425	3	0	0	0	0	logfile
✔	7WTH	32786	2025-06-04	2022-02-04	4.3	3.63	—	4.0	0.004	0.78	0.0	0.05	12.97	0.01	2.169	9.08	0.85	8.0	92.0	0.0	-2.03	0.69	0.70	—	3.6	0.003	0.74	0.0	0.05	13.23	0.00	2.568	9.86	0.00	9.2	90.6	0.2	-2.19	1.19	0.69	0.71	—	3257	421	3	0	0	0	0	logfile
✔	7WTC	32778	2025-06-25	2022-02-04	4.0	4.61	—	3.1	0.009	0.83	0.0	0.05	13.85	0.01	2.060	22.27	0.10	8.0	92.0	0.1	-0.78	0.86	0.65	—	3.1	0.003	0.77	0.0	0.05	16.09	0.00	2.390	18.16	2.19	7.6	92.3	0.1	-1.15	0.61	0.87	0.68	—	28418	3661	8	0	6	0	0	logfile
✔	7WTB	32775	2025-06-25	2022-02-04	3.7	4.54	—	3.7	0.008	0.92	2.0	0.05	14.94	0.00	2.109	10.11	1.76	6.9	92.9	0.2	0.09	0.89	0.74	0.45	3.8	0.003	0.72	0.0	0.04	16.01	0.00	2.343	9.81	2.19	7.1	92.9	0.1	0.00	1.44	0.91	0.82	0.66	28480	3661	8	0	8	0	0	logfile
✔	7TUY	26135	2025-06-06	2022-02-03	2.98	3.60	—	3.4	0.005	0.87	0.0	0.05	12.82	0.01	2.202	7.13	0.26	5.6	94.4	0.0	-3.71	0.68	0.81	3.08	3.4	0.003	0.74	0.0	0.04	15.51	0.00	2.582	8.62	2.20	5.2	94.8	0.0	-0.94	1.02	0.68	0.82	2.49	7157	928	5	0	1	0	0	logfile
✔	7R1W	14242	2025-06-20	2022-02-03	3.6	4.16	3.68	4.0	0.006	0.69	0.0	0.05	13.74	0.00	1.387	8.79	0.16	4.7	95.0	0.3	-2.64	0.74	0.81	3.05	4.0	0.005	0.60	0.0	0.04	14.87	0.00	2.277	4.52	0.95	5.8	94.1	0.1	-0.58	1.02	0.75	0.84	2.65	23186	1509	6	0	0	0	11363	logfile
✔	7TUZ	26136	2025-06-07	2022-02-03	3.12	3.73	—	3.6	0.011	0.73	0.0	0.07	12.68	0.01	2.161	6.74	0.10	3.5	96.5	0.0	-2.23	0.73	0.86	3.03	3.6	0.003	0.58	0.0	0.04	14.92	0.00	2.547	6.63	2.70	2.8	97.2	0.0	0.51	0.58	0.71	0.84	2.75	8910	1141	6	0	1	0	0	logfile
✔	7R1Y	14243	2025-06-05	2022-02-03	3.0	3.01	2.95	3.0	0.002	0.52	0.0	0.04	13.13	0.00	2.252	6.47	3.44	2.9	97.1	0.0	0.36	0.72	0.71	2.29	3.0	0.003	0.63	0.0	0.04	16.33	0.00	2.487	9.79	2.82	3.1	96.9	0.0	1.04	1.12	0.74	0.73	2.30	5704	723	1	0	0	0	0	logfile
✔	7R1B	14237	2025-06-22	2022-02-02	2.8	3.00	2.92	2.9	0.005	0.70	0.0	0.05	12.03	0.00	2.220	3.33	0.54	3.4	96.6	0.0	-0.28	0.73	0.82	3.60	2.9	0.003	0.59	0.0	0.04	13.57	0.00	2.160	4.03	1.36	3.1	96.9	0.0	-0.16	1.13	0.76	0.85	3.39	25554	3193	14	0	42	0	0	logfile
✔	7R11	14227	2025-06-06	2022-02-02	3.5	3.66	3.48	3.7	0.004	0.56	0.0	0.05	11.82	0.00	2.261	4.32	0.54	3.4	96.6	0.0	0.15	0.69	0.75	2.31	3.7	0.009	0.65	0.0	0.04	14.08	0.00	2.381	4.47	1.49	4.6	95.4	0.0	-0.05	2.47	0.71	0.76	1.90	6870	837	4	0	8	0	0	logfile
✔	7R18	14234	2025-06-22	2022-02-02	3.0	3.30	3.14	3.2	0.006	0.73	0.0	0.06	10.84	0.01	2.212	2.74	0.32	3.9	96.1	0.0	0.28	0.78	0.79	3.10	3.2	0.004	0.64	0.0	0.04	12.78	0.00	2.353	3.64	1.36	4.0	96.0	0.0	-0.02	1.17	0.80	0.85	2.82	25773	3189	15	0	60	0	0	logfile
✔	7R16	14232	2025-06-21	2022-02-02	3.5	3.73	3.55	3.6	0.005	0.65	0.0	0.05	13.28	0.00	2.241	4.72	0.19	5.2	94.8	0.0	-0.43	0.80	0.83	2.18	3.6	0.006	0.79	1.0	0.05	14.53	0.00	2.065	6.66	1.79	5.2	94.7	0.0	-0.36	1.15	0.80	0.84	2.11	24034	3002	12	0	40	0	0	logfile
✔	7R19	14235	2025-06-22	2022-02-02	3.3	3.69	3.52	3.6	0.004	0.60	0.0	0.05	11.32	0.01	2.179	4.01	0.18	2.1	97.9	0.0	0.42	0.82	0.83	2.64	3.6	0.004	0.61	0.0	0.04	13.32	0.00	2.481	4.45	1.48	3.2	96.8	0.0	0.06	0.51	0.84	0.86	2.57	25388	3178	10	0	38	0	0	logfile
✔	7R10	14226	2025-06-08	2022-02-02	4.0	4.22	3.98	3.9	0.003	0.52	0.0	0.04	13.31	0.00	2.131	6.97	0.47	3.6	96.4	0.0	0.67	0.90	0.83	—	3.9	0.002	0.50	0.0	0.04	14.17	0.00	2.155	5.20	0.75	2.6	97.4	0.0	0.65	0.49	0.90	0.84	—	9823	1210	4	0	8	0	0	logfile
✔	7R15	14231	2025-06-21	2022-02-02	4.1	4.52	4.27	4.3	0.004	0.61	0.0	0.05	14.18	0.00	2.099	11.10	0.00	6.2	93.8	0.0	-0.90	0.86	0.84	—	4.3	0.004	0.62	0.0	0.04	13.78	0.00	2.306	8.45	0.08	5.7	94.3	0.0	-0.74	0.38	0.85	0.83	—	24100	3000	9	0	43	0	0	logfile
✔	7R0J	14223	2025-06-05	2022-02-02	4.23	4.64	4.41	4.4	0.015	1.03	0.0	0.05	13.44	0.01	2.029	37.19	0.20	8.8	91.2	0.0	-0.99	0.76	0.79	—	4.4	0.005	0.79	0.0	0.04	13.61	0.01	2.419	24.91	0.00	6.2	93.8	0.0	-0.80	0.54	0.75	0.79	—	4669	596	3	0	0	0	0	logfile
✔	7R1D	14239	2025-06-05	2022-02-02	3.5	3.51	—	3.5	0.005	0.80	0.0	0.05	13.61	0.01	2.097	17.88	0.00	7.1	92.9	0.0	-1.31	0.77	0.79	2.64	3.5	0.003	0.78	0.0	0.05	15.95	0.00	2.520	12.18	2.64	5.9	94.1	0.0	-0.87	1.23	0.76	0.77	1.49	5183	653	3	0	0	0	0	logfile
✔	7TUi	26132	2025-06-23	2022-02-02	2.66	2.87	—	2.9	0.005	0.88	0.0	0.05	12.33	0.01	2.034	16.42	0.00	6.8	92.8	0.4	-2.00	0.35	0.69	2.57	2.9	0.003	0.69	0.0	0.05	15.76	0.00	2.460	12.38	1.60	6.2	93.6	0.3	-1.05	1.18	0.34	0.72	2.09	27380	3466	3	0	1	0	0	logfile
✔	7TU5	26126	2025-06-29	2022-02-02	2.1	1.97	2.06	1.8	0.009	0.85	6.0	0.06	15.88	0.01	1.910	4.33	1.54	1.4	98.6	0.0	0.64	0.84	0.82	4.27	1.7	0.004	0.55	0.0	0.04	16.54	0.00	1.952	4.82	2.37	1.5	98.4	0.0	1.75	0.79	0.87	0.87	4.98	19656	2574	18	0	6	6	0	logfile
✔	7WSW	32769	2025-06-13	2022-02-02	3.4	3.86	—	3.7	0.003	0.55	0.0	0.04	13.26	0.00	2.149	6.77	0.00	5.5	94.5	0.0	0.70	0.64	0.84	2.21	3.7	0.003	0.55	0.0	0.04	14.65	0.00	2.375	5.40	0.82	6.1	93.9	0.0	1.03	1.12	0.65	0.86	1.94	15051	1868	8	0	7	0	0	logfile

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