Table showing results for June 2025

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7R12	14228	2025-06-06	2022-02-02	3.3	3.37	3.21	3.3	0.003	0.57	0.0	0.04	13.55	0.00	2.161	4.03	0.00	2.8	97.2	0.0	0.39	0.74	0.81	2.86	3.3	0.004	0.58	0.0	0.04	14.87	0.00	2.578	3.58	1.62	2.8	97.2	0.0	0.72	0.26	0.75	0.83	2.71	6858	839	4	0	7	0	0	logfile
✔	7R18	14234	2025-06-22	2022-02-02	3.0	3.30	3.14	3.2	0.006	0.73	0.0	0.06	10.84	0.01	2.212	2.74	0.32	3.9	96.1	0.0	0.28	0.78	0.79	3.10	3.2	0.004	0.64	0.0	0.04	12.78	0.00	2.353	3.64	1.36	4.0	96.0	0.0	-0.02	1.17	0.80	0.85	2.82	25773	3189	15	0	60	0	0	logfile
✔	7R13	14229	2025-06-21	2022-02-02	3.6	3.78	3.64	3.7	0.004	0.60	0.0	0.04	12.84	0.00	2.232	6.28	0.00	4.7	95.3	0.0	-0.51	0.81	0.83	2.58	3.7	0.003	0.58	0.0	0.04	14.07	0.00	2.484	4.88	1.87	3.1	96.9	0.0	-0.22	1.16	0.80	0.83	2.28	24303	3003	15	0	57	0	0	logfile
✔	7R1B	14237	2025-06-22	2022-02-02	2.8	3.00	2.92	2.9	0.005	0.70	0.0	0.05	12.03	0.00	2.220	3.33	0.54	3.4	96.6	0.0	-0.28	0.73	0.82	3.60	2.9	0.003	0.59	0.0	0.04	13.57	0.00	2.160	4.03	1.36	3.1	96.9	0.0	-0.16	1.13	0.76	0.85	3.39	25554	3193	14	0	42	0	0	logfile
✔	7WSW	32769	2025-06-13	2022-02-02	3.4	3.86	—	3.7	0.003	0.55	0.0	0.04	13.26	0.00	2.149	6.77	0.00	5.5	94.5	0.0	0.70	0.64	0.84	2.21	3.7	0.003	0.55	0.0	0.04	14.65	0.00	2.375	5.40	0.82	6.1	93.9	0.0	1.03	1.12	0.65	0.86	1.94	15051	1868	8	0	7	0	0	logfile
✔	7TU5	26126	2025-06-29	2022-02-02	2.1	1.97	2.06	1.8	0.009	0.85	6.0	0.06	15.88	0.01	1.910	4.33	1.54	1.4	98.6	0.0	0.64	0.84	0.82	4.27	1.7	0.004	0.55	0.0	0.04	16.54	0.00	1.952	4.82	2.37	1.5	98.4	0.0	1.75	0.79	0.87	0.87	4.98	19656	2574	18	0	6	6	0	logfile
✔	7WSR	32765	2025-06-08	2022-02-01	2.9	3.08	2.90	3.1	0.004	0.65	0.0	0.04	10.32	0.00	2.244	4.74	0.83	1.8	98.2	0.0	1.52	0.62	0.82	2.75	3.1	0.003	0.61	0.0	0.04	14.32	0.00	2.543	7.95	2.18	2.9	97.1	0.0	2.20	0.97	0.61	0.84	2.52	9366	1200	4	0	4	0	0	logfile
✔	7TTS	26122	2025-06-16	2022-02-01	2.9	12.34	—	—	0.008	0.99	1.0	0.08	12.97	0.01	1.788	5.64	0.30	3.2	96.6	0.1	1.89	0.77	0.55	-0.20	—	0.003	0.62	0.0	0.04	14.12	0.00	1.822	14.39	0.18	3.4	96.5	0.1	2.41	1.04	0.69	0.38	-0.43	18793	2686	12	0	23	0	0	logfile
✔	7TTR	26121	2025-06-14	2022-02-01	2.96	3.21	—	3.2	0.009	1.08	1.0	0.08	13.73	0.01	1.788	6.35	0.30	4.4	95.4	0.2	1.27	0.60	0.69	3.46	3.2	0.004	0.63	0.0	0.04	16.71	0.00	1.949	6.73	1.64	3.8	96.1	0.1	1.11	0.75	0.75	0.87	3.11	15697	1912	12	0	23	0	0	logfile
✔	7TTH	26115	2025-06-11	2022-02-01	3.25	3.81	—	3.7	0.004	0.73	0.0	0.05	13.05	0.00	2.232	7.80	0.00	4.5	95.5	0.0	-0.01	0.55	0.71	1.99	3.7	0.003	0.66	0.0	0.04	14.00	0.00	2.527	4.49	1.91	4.0	96.0	0.0	0.79	0.52	0.66	0.79	1.76	12698	1750	8	0	10	0	0	logfile
✔	7WSQ	32764	2025-06-15	2022-02-01	3.8	3.52	—	3.9	0.039	1.70	0.0	0.45	14.72	0.01	1.827	11.77	0.00	4.9	95.1	0.0	-0.66	0.68	0.75	1.94	3.9	0.004	1.44	0.0	0.06	16.42	0.00	1.795	10.11	1.64	4.8	95.2	0.0	-0.40	1.30	0.68	0.76	1.83	16522	2104	10	0	10	0	0	logfile
✔	7TTi	26116	2025-06-06	2022-02-01	3.5	3.76	—	3.8	0.008	0.63	0.0	0.04	16.78	0.01	1.990	50.92	0.28	7.7	92.3	0.0	1.88	0.46	0.65	2.20	3.8	0.003	0.77	0.0	0.04	15.13	0.01	2.601	8.23	4.63	6.2	93.8	0.0	1.24	0.58	0.61	0.77	1.97	7670	1084	8	0	10	0	0	logfile
✔	7WSV	32768	2025-06-14	2022-02-01	4.5	4.52	4.24	4.5	0.003	0.74	0.0	0.04	13.53	0.00	2.263	10.81	0.00	4.5	95.5	0.0	0.72	0.52	0.75	—	4.5	0.003	0.72	0.0	0.04	13.46	0.01	2.429	9.91	0.00	4.5	95.5	0.0	1.57	0.50	0.52	0.76	—	16443	2051	7	0	0	0	0	logfile
✔	7TTN	26120	2025-06-29	2022-02-01	3.3	3.63	—	3.5	0.006	0.68	1.0	0.04	16.38	0.00	1.873	4.98	0.48	3.1	96.7	0.1	-3.04	0.64	0.86	2.32	3.5	0.006	0.67	0.0	0.05	16.63	0.00	1.575	4.11	1.87	4.3	95.6	0.1	-0.06	0.34	0.65	0.87	2.10	34563	4481	25	0	24	8	0	logfile
✔	7R0C	14221	2025-06-06	2022-02-01	4.73	5.24	5.07	5.1	0.005	0.91	1.0	0.05	13.19	0.01	2.100	26.54	0.14	6.1	93.9	0.0	-0.89	0.64	0.73	—	5.1	0.004	0.74	0.0	0.05	13.29	0.01	2.418	20.96	0.00	6.4	93.6	0.0	-0.66	0.54	0.65	0.74	—	6816	875	5	0	1	0	0	logfile
✔	7TT1	26107	2025-06-17	2022-01-31	4.3	4.56	—	4.4	0.004	0.82	0.0	0.05	10.41	0.00	1.973	3.78	0.00	1.3	98.7	0.0	0.92	0.72	0.72	—	4.4	0.003	0.60	0.0	0.04	12.99	0.00	2.250	6.72	0.00	3.4	96.6	0.0	0.03	1.53	0.72	0.75	—	20398	1329	6	0	0	0	10005	logfile
✔	7TT2	26108	2025-06-17	2022-01-31	4.2	4.39	—	4.3	0.004	0.91	0.0	0.05	10.68	0.01	2.171	2.60	0.00	1.4	98.6	0.0	0.80	0.70	0.75	—	4.3	0.004	0.62	0.0	0.04	13.15	0.00	2.266	4.96	0.00	4.3	95.7	0.0	0.23	1.57	0.69	0.75	—	20355	1328	6	0	0	0	9973	logfile
✔	7TRY	26103	2025-06-07	2022-01-31	3.7	4.15	—	4.0	0.004	0.80	0.0	0.05	7.34	0.01	2.261	3.44	0.00	1.7	98.3	0.0	1.03	0.67	0.74	1.05	4.0	0.004	0.72	0.0	0.04	14.36	0.00	2.474	12.40	2.66	2.7	97.3	0.0	1.72	2.52	0.69	0.79	0.85	8340	1211	6	0	0	0	0	logfile
✔	7TS0	26104	2025-06-08	2022-01-31	2.8	3.02	—	3.1	0.004	0.79	0.0	0.05	8.38	0.01	2.273	3.92	0.10	1.5	98.5	0.0	-1.24	0.66	0.80	2.15	3.0	0.002	0.55	0.0	0.04	15.37	0.00	2.508	4.46	2.74	1.6	98.4	0.0	1.86	1.26	0.62	0.83	2.69	9383	1186	6	0	0	0	0	logfile
✔	7TT6	26112	2025-06-12	2022-01-31	4.3	4.50	—	4.4	0.005	0.91	0.0	0.05	10.73	0.01	2.190	3.14	0.00	1.4	98.6	0.0	0.38	0.64	0.69	—	4.4	0.003	0.61	0.0	0.04	12.22	0.00	2.289	4.42	0.00	2.7	97.3	0.0	0.08	1.15	0.65	0.74	—	14047	915	5	0	0	0	6839	logfile

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