Table showing results for June 2025

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7TSZ	26105	2025-06-17	2022-01-31	4.5	4.77	—	4.6	0.005	0.89	0.0	0.05	11.13	0.01	2.032	6.90	0.00	1.2	98.8	0.0	0.72	0.73	0.70	—	4.6	0.003	0.56	0.0	0.04	12.70	0.00	2.207	4.11	0.00	2.9	97.1	0.0	-0.29	1.04	0.74	0.74	—	19722	1286	6	0	0	0	9670	logfile
✔	7TT1	26107	2025-06-17	2022-01-31	4.3	4.56	—	4.4	0.004	0.82	0.0	0.05	10.41	0.00	1.973	3.78	0.00	1.3	98.7	0.0	0.92	0.72	0.72	—	4.4	0.003	0.60	0.0	0.04	12.99	0.00	2.250	6.72	0.00	3.4	96.6	0.0	0.03	1.53	0.72	0.75	—	20398	1329	6	0	0	0	10005	logfile
✔	7TRY	26103	2025-06-07	2022-01-31	3.7	4.15	—	4.0	0.004	0.80	0.0	0.05	7.34	0.01	2.261	3.44	0.00	1.7	98.3	0.0	1.03	0.67	0.74	1.05	4.0	0.004	0.72	0.0	0.04	14.36	0.00	2.474	12.40	2.66	2.7	97.3	0.0	1.72	2.52	0.69	0.79	0.85	8340	1211	6	0	0	0	0	logfile
✔	7TT6	26112	2025-06-12	2022-01-31	4.3	4.50	—	4.4	0.005	0.91	0.0	0.05	10.73	0.01	2.190	3.14	0.00	1.4	98.6	0.0	0.38	0.64	0.69	—	4.4	0.003	0.61	0.0	0.04	12.22	0.00	2.289	4.42	0.00	2.7	97.3	0.0	0.08	1.15	0.65	0.74	—	14047	915	5	0	0	0	6839	logfile
✔	7TT7	26113	2025-06-11	2022-01-31	4.8	5.05	—	4.9	0.003	0.84	0.0	0.05	10.50	0.00	2.205	5.04	0.00	1.3	98.7	0.0	0.94	0.66	0.63	—	4.8	0.003	0.57	0.0	0.04	12.05	0.00	2.416	3.91	0.00	2.2	97.8	0.0	0.07	1.57	0.70	0.72	—	13296	867	5	0	0	0	6468	logfile
✔	7TT5	26111	2025-06-12	2022-01-31	4.3	4.48	—	4.4	0.004	0.69	0.0	0.04	10.02	0.01	2.033	4.14	0.00	0.9	99.1	0.0	1.26	0.65	0.70	—	4.4	0.003	0.59	0.0	0.04	12.26	0.00	2.288	4.91	0.13	3.0	97.0	0.0	0.42	3.44	0.68	0.77	—	14255	928	5	0	0	0	6938	logfile
✔	7TRQ	26101	2025-06-07	2022-01-30	2.5	3.10	2.34	2.8	0.006	0.83	0.0	0.06	11.80	0.01	2.295	2.26	0.00	2.0	98.0	0.0	-0.50	0.75	0.89	4.72	2.8	0.003	0.61	0.0	0.04	14.74	0.00	2.338	5.63	1.51	1.7	98.3	0.0	1.34	0.97	0.77	0.91	4.33	8723	1129	6	0	2	0	0	logfile
✔	7WSP	32763	2025-06-06	2022-01-30	4.09	4.37	—	4.2	0.008	1.12	0.0	0.06	10.99	0.01	2.212	8.21	0.68	13.2	86.6	0.2	-4.84	0.72	0.80	—	4.2	0.003	0.72	0.0	0.04	11.76	0.00	2.413	7.31	0.11	9.3	90.7	0.0	-2.18	1.38	0.71	0.78	—	7883	1009	4	0	0	0	0	logfile
✔	7WSo	32762	2025-06-05	2022-01-30	3.03	3.25	—	3.3	0.014	1.30	0.0	0.07	10.67	0.01	2.351	3.25	0.85	8.7	91.3	0.0	-2.93	0.63	0.81	3.97	3.2	0.003	0.63	0.0	0.04	14.09	0.00	2.545	3.42	2.27	3.2	96.8	0.0	-0.27	1.24	0.66	0.85	2.95	6204	780	4	0	0	0	0	logfile
✔	7TRS	26102	2025-06-07	2022-01-30	2.8	3.39	2.61	3.1	0.006	0.78	0.0	0.05	12.25	0.01	2.243	4.02	0.00	1.9	98.1	0.0	-1.09	0.71	0.83	3.37	3.1	0.003	0.74	0.0	0.04	15.18	0.00	2.484	7.39	1.65	2.4	97.6	0.0	1.07	0.60	0.71	0.84	3.17	8571	1121	6	0	1	0	0	logfile
✔	7WSM	32760	2025-06-04	2022-01-30	3.25	3.65	—	3.5	0.006	0.87	0.0	0.04	17.30	0.01	2.253	11.36	0.81	6.5	93.5	0.0	-1.23	0.62	0.82	1.57	3.6	0.003	0.69	0.0	0.04	17.97	0.01	2.608	7.80	3.23	3.2	96.8	0.0	1.76	0.46	0.60	0.82	1.16	3577	464	3	0	3	0	0	logfile
✔	7WSN	32761	2025-06-04	2022-01-30	3.31	3.62	—	3.6	0.007	0.84	0.0	0.04	17.55	0.01	2.248	12.89	1.08	5.6	94.4	0.0	-0.44	0.51	0.78	1.65	3.6	0.004	0.65	0.0	0.04	17.61	0.01	2.621	6.86	2.70	3.7	96.3	0.0	2.00	0.49	0.49	0.77	1.54	3567	463	3	0	3	0	0	logfile
✔	7TRP	26100	2025-06-07	2022-01-30	2.4	3.12	2.45	2.9	0.006	0.82	0.0	0.06	11.23	0.01	2.287	2.62	0.21	2.0	98.0	0.0	-0.43	0.75	0.88	4.06	2.9	0.003	0.60	0.0	0.04	14.55	0.00	2.239	6.69	0.75	1.4	98.6	0.0	1.39	0.98	0.73	0.88	3.95	8681	1122	6	0	2	0	0	logfile
✔	7WSG	32757	2025-06-10	2022-01-29	3.03	3.29	—	3.2	0.003	0.52	0.0	0.04	12.82	0.00	2.058	10.65	4.60	2.7	97.3	0.0	-1.05	0.70	0.70	2.71	3.2	0.005	0.69	0.0	0.05	15.46	0.00	2.162	13.53	3.02	3.6	96.4	0.0	-0.62	0.92	0.72	0.75	2.47	6413	787	3	0	1	0	0	logfile
✔	7WSi	32759	2025-06-05	2022-01-29	3.32	3.90	—	3.8	0.003	0.67	0.0	0.04	12.25	0.00	2.122	8.82	0.00	7.9	92.1	0.0	-0.23	0.66	0.77	1.76	3.8	0.003	0.75	0.0	0.04	16.08	0.00	2.499	7.95	4.02	8.0	92.0	0.0	-0.03	1.45	0.58	0.79	2.03	5701	743	3	0	0	0	0	logfile
✔	7WSF	32756	2025-06-11	2022-01-29	2.87	3.08	—	3.1	0.003	0.44	0.0	0.04	11.23	0.00	2.016	6.14	3.87	2.7	97.3	0.0	-0.12	0.72	0.81	4.05	3.1	0.003	0.53	0.0	0.04	14.75	0.00	2.053	6.21	1.29	2.3	97.7	0.0	1.12	1.17	0.76	0.88	3.26	7170	879	3	0	1	0	0	logfile
✔	7TRK	26099	2025-06-07	2022-01-29	2.8	3.39	2.75	3.2	0.006	0.89	0.0	0.06	11.33	0.01	2.253	2.57	0.11	1.6	98.4	0.0	-1.00	0.73	0.86	4.24	3.2	0.005	0.62	0.0	0.04	14.55	0.00	2.458	5.20	1.73	1.8	98.2	0.0	1.07	0.46	0.74	0.89	3.40	8659	1126	6	0	1	0	0	logfile
✔	7TRJ	26098	2025-06-21	2022-01-29	2.8	3.41	—	3.3	0.004	0.87	0.0	0.05	16.16	0.00	2.080	9.67	6.92	3.6	96.3	0.1	-1.80	0.78	0.82	2.52	3.3	0.007	0.74	0.0	0.05	16.45	0.00	2.454	6.19	3.03	4.1	95.9	0.0	0.61	0.67	0.79	0.86	3.18	25190	3234	10	0	0	0	0	logfile
✔	7WSE	32755	2025-06-10	2022-01-29	2.93	3.45	—	3.4	0.002	0.45	0.0	0.04	10.17	0.00	2.193	4.86	1.01	1.8	98.2	0.0	-0.67	0.69	0.79	3.50	3.4	0.003	0.62	0.0	0.04	15.04	0.00	2.130	6.29	2.31	2.3	97.7	0.0	0.65	2.06	0.63	0.81	2.53	6431	791	3	0	1	0	0	logfile
✔	7WSH	32758	2025-06-10	2022-01-29	2.89	3.01	—	3.0	0.003	0.45	0.0	0.04	10.06	0.00	2.140	5.01	0.72	1.9	98.1	0.0	-0.03	0.69	0.82	4.30	3.0	0.003	0.56	0.0	0.04	15.58	0.00	2.084	6.83	1.72	2.0	98.0	0.0	1.00	0.84	0.72	0.85	3.65	6457	793	4	0	2	0	0	logfile

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