Table showing results for June 2025

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7WS1	32740	2025-06-27	2022-01-28	3.4	3.94	—	3.7	0.004	0.67	0.0	0.05	13.84	0.00	2.244	6.87	0.03	2.9	97.1	0.0	-0.86	0.79	0.78	2.61	3.7	0.005	0.67	0.0	0.05	14.61	0.00	2.437	6.30	1.95	4.5	95.5	0.0	-0.55	0.61	0.81	0.87	2.61	32212	4050	32	0	66	0	0	logfile
✔	7WS7	32749	2025-06-05	2022-01-28	3.4	3.83	—	3.7	0.005	0.80	0.0	0.05	14.98	0.00	1.820	9.34	0.00	5.1	94.9	0.0	-1.78	0.71	0.84	3.63	3.7	0.003	0.68	0.0	0.04	15.61	0.00	2.478	6.88	2.66	4.7	95.3	0.0	-1.25	1.26	0.70	0.87	3.25	5209	671	6	0	2	0	0	logfile
✔	7TR6	26081	2025-06-23	2022-01-28	3.4	3.88	—	3.8	0.003	0.57	0.0	0.04	15.20	0.00	2.136	13.55	0.00	6.6	93.4	0.0	-0.80	0.71	0.65	0.77	3.7	0.003	0.69	0.0	0.04	17.44	0.00	2.373	10.89	2.06	6.5	93.4	0.1	-0.89	1.08	0.79	0.81	1.48	27449	3383	15	45	0	0	0	logfile
✘	7WSC	32753	2025-06-04	2022-01-28	3.78	4.01	—	4.0	0.013	1.68	5.0	0.10	15.34	0.01	1.600	41.09	4.99	14.7	81.6	3.6	-4.09	0.65	0.78	2.33	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	3369	422	4	0	2	0	0	logfile
✔	7WRZ	32738	2025-06-04	2022-01-28	3.26	3.44	—	3.4	0.004	0.62	0.0	0.04	13.60	0.01	2.201	6.90	0.00	5.9	94.1	0.0	-1.03	0.65	0.85	3.98	3.4	0.004	0.58	0.0	0.05	15.67	0.01	2.535	6.90	2.30	5.7	94.1	0.2	-1.03	1.14	0.63	0.86	3.29	3270	414	4	0	2	0	0	logfile
✔	7WS6	32748	2025-06-04	2022-01-28	3.8	4.15	—	4.0	0.004	0.68	0.0	0.05	13.45	0.00	2.282	11.98	0.00	4.7	95.3	0.0	-1.37	0.67	0.73	2.81	4.0	0.004	0.80	0.0	0.05	16.57	0.00	2.548	11.26	1.81	5.2	94.8	0.0	-1.30	0.71	0.67	0.73	2.22	3531	451	3	0	0	0	0	logfile
✔	7TRF	26088	2025-06-12	2022-01-28	3.7	4.03	—	3.6	0.005	0.74	0.0	0.05	21.47	0.00	2.206	7.56	0.10	4.6	95.3	0.1	-0.55	0.83	0.81	1.72	3.6	0.002	0.57	0.0	0.03	21.46	0.00	2.345	5.29	0.84	2.6	97.4	0.0	1.01	0.63	0.83	0.82	1.60	13581	1106	5	224	0	0	0	logfile
✔	7TR9	26083	2025-06-29	2022-01-28	3.9	4.30	—	4.1	0.003	0.68	2.0	0.05	13.73	0.00	1.387	16.20	0.17	8.7	90.9	0.4	-2.44	0.80	0.72	0.00	4.0	0.004	0.83	0.0	0.05	16.59	0.00	1.153	23.73	2.04	9.3	90.5	0.2	-2.37	1.99	0.82	0.78	0.83	34208	4192	20	75	2	0	0	logfile
✔	7TRD	26086	2025-06-11	2022-01-28	3.3	3.39	—	3.4	0.004	0.64	0.0	0.04	21.93	0.00	2.206	7.50	0.12	4.3	95.7	0.0	-0.10	0.79	0.84	2.70	3.4	0.002	0.51	0.0	0.03	21.73	0.00	2.398	4.60	0.86	3.4	96.6	0.0	1.29	0.38	0.79	0.84	2.07	12240	934	3	224	0	0	0	logfile
✔	7TRA	26084	2025-06-29	2022-01-28	3.3	3.94	—	3.8	0.003	0.60	0.0	0.04	15.66	0.00	2.017	16.19	0.00	7.6	92.1	0.3	-1.17	0.80	0.73	0.77	3.7	0.004	0.82	1.0	0.05	17.54	0.00	2.018	20.27	2.27	8.1	91.7	0.2	-1.42	1.34	0.82	0.80	1.21	34872	4174	20	113	2	0	0	logfile
✔	7TRC	26085	2025-06-13	2022-01-28	3.3	3.10	—	3.3	0.003	0.64	0.0	0.04	17.83	0.00	2.121	8.21	0.21	4.2	95.8	0.0	-1.82	0.66	0.74	2.50	3.3	0.004	0.70	0.0	0.04	19.17	0.01	2.111	8.35	2.61	5.9	94.1	0.0	-1.19	1.21	0.69	0.78	2.06	14747	1599	10	92	0	0	0	logfile
✘	7WS8	32750	2025-06-29	2022-01-28	3.0	3.47	—	3.2	0.004	0.62	0.0	0.05	13.67	0.00	2.136	8.35	0.05	2.7	97.3	0.0	0.05	0.78	0.82	2.52	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	34684	4286	24	0	48	0	0	logfile
✔	7WS9	32751	2025-06-25	2022-01-28	2.9	3.48	—	3.3	0.004	0.60	0.0	0.04	13.62	0.00	2.095	7.98	0.03	2.3	97.5	0.2	0.33	0.79	0.84	2.70	3.3	0.003	0.59	0.0	0.04	14.64	0.00	2.423	5.68	1.05	2.0	98.0	0.0	0.69	1.71	0.77	0.85	2.47	29710	3691	22	0	40	0	0	logfile
✘	7WS5	32744	2025-06-26	2022-01-28	3.7	4.15	—	3.9	0.003	0.65	0.0	0.05	13.30	0.00	2.168	9.14	0.09	2.5	97.5	0.1	-0.07	0.83	0.84	1.95	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	30228	3800	26	0	38	0	0	logfile
✘	7WS3	32742	2025-06-26	2022-01-28	3.6	4.00	—	3.8	0.004	0.67	0.0	0.05	13.16	0.00	2.202	7.83	0.03	3.2	96.8	0.0	-0.92	0.80	0.76	2.72	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	30215	3811	27	0	54	0	0	logfile
✔	7WS2	32741	2025-06-04	2022-01-28	3.3	3.22	—	3.1	0.003	0.64	0.0	0.04	13.31	0.01	2.258	7.21	0.00	3.5	96.5	0.0	-1.86	0.68	0.78	3.08	3.1	0.005	0.75	0.0	0.05	16.00	0.01	2.563	7.06	3.30	8.0	92.0	0.0	-1.68	0.49	0.70	0.82	3.34	3343	431	3	0	0	0	0	logfile
✔	7TRE	26087	2025-06-12	2022-01-28	3.5	3.56	—	3.5	0.006	0.77	0.0	0.05	21.80	0.01	2.188	7.45	0.11	6.4	93.6	0.0	-0.75	0.77	0.77	2.23	3.5	0.002	0.55	0.0	0.03	21.71	0.00	2.432	5.91	1.38	3.8	96.2	0.0	0.74	0.74	0.78	0.82	2.20	13411	1086	4	224	0	0	0	logfile
✔	7WS0	32739	2025-06-26	2022-01-28	3.2	3.66	—	3.5	0.004	0.64	0.0	0.05	13.18	0.00	2.225	5.96	0.00	3.1	96.9	0.0	-0.91	0.80	0.80	2.70	3.5	0.003	0.63	0.0	0.04	14.20	0.00	2.417	5.06	1.82	3.7	96.3	0.0	-0.30	0.55	0.79	0.85	2.52	30440	3817	30	0	66	0	0	logfile
✔	7WSA	32752	2025-06-05	2022-01-28	3.0	3.42	—	3.4	0.004	0.79	0.0	0.05	13.94	0.01	2.185	11.53	0.00	2.9	97.1	0.0	-1.59	0.76	0.71	2.04	3.4	0.005	1.13	1.0	0.06	15.68	0.00	2.254	14.88	1.71	3.2	96.8	0.0	0.53	0.69	0.78	0.77	1.84	6567	796	4	0	7	0	0	logfile
✔	7WS4	32743	2025-06-23	2022-01-28	3.7	4.11	—	3.9	0.004	0.63	0.0	0.05	13.51	0.00	2.110	9.30	0.00	3.5	96.5	0.0	0.09	0.83	0.85	2.54	3.9	0.003	0.58	0.0	0.04	14.55	0.00	2.452	6.35	0.76	2.3	97.7	0.0	0.23	0.36	0.84	0.86	2.31	26566	3327	22	0	38	0	0	logfile

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