Table showing results for June 2025

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7WRV	32736	2025-06-05	2022-01-27	2.47	2.59	—	2.7	0.003	0.60	0.0	0.04	14.42	0.00	2.061	3.93	0.58	2.9	97.1	0.0	0.27	0.47	0.74	3.28	2.6	0.003	0.57	0.0	0.05	16.20	0.00	2.380	3.78	3.19	5.0	95.0	0.0	-0.62	1.44	0.49	0.78	2.45	6359	427	3	0	0	0	3092	logfile
✔	7WRo	32734	2025-06-04	2022-01-27	3.4	3.62	—	3.6	0.008	1.12	0.0	0.07	13.65	0.01	2.309	7.42	0.00	7.6	92.4	0.0	-1.94	0.58	0.76	2.56	3.6	0.004	0.69	0.0	0.05	15.18	0.00	2.395	11.77	4.34	5.4	94.6	0.0	-1.43	0.36	0.58	0.77	2.86	3179	412	3	0	0	0	0	logfile
✔	7WRL	32732	2025-06-04	2022-01-27	3.51	3.69	—	3.6	0.006	1.03	0.0	0.06	14.71	0.01	2.289	5.84	0.00	13.4	86.6	0.0	-4.19	0.64	0.78	2.31	3.6	0.004	0.68	0.0	0.04	16.10	0.00	2.471	6.94	3.10	11.2	88.8	0.0	-3.43	0.48	0.63	0.77	3.03	3251	419	3	0	0	0	0	logfile
✔	7TQV	26073	2025-06-15	2022-01-27	3.43	3.72	—	3.7	0.002	0.38	0.0	0.04	10.87	0.00	2.162	5.00	0.82	3.8	96.2	0.0	-0.34	0.68	0.69	2.18	3.8	0.002	0.56	0.0	0.04	14.27	0.00	2.548	5.80	1.91	2.9	97.1	0.0	-0.32	1.23	0.73	0.76	2.11	17792	2083	8	66	0	0	0	logfile
✔	7WRY	32737	2025-06-04	2022-01-27	3.28	3.44	—	3.4	0.006	0.93	0.0	0.06	16.47	0.01	2.313	3.13	0.29	6.7	93.3	0.0	-2.76	0.58	0.84	4.11	3.4	0.004	0.61	0.0	0.04	15.80	0.00	2.459	5.94	3.16	5.7	94.3	0.0	-1.50	0.38	0.58	0.86	4.21	3267	413	4	0	3	0	0	logfile
✘	7TQU	26072	2025-06-18	2022-01-27	3.8	3.89	3.52	3.8	0.021	1.81	0.0	0.10	9.74	0.01	2.375	0.92	0.00	2.1	97.9	0.0	0.71	0.38	0.84	3.42	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	20891	2544	17	0	217	0	0	logfile
✔	7WRQ	32735	2025-06-05	2022-01-27	3.6	4.08	3.18	3.8	0.012	1.38	1.0	0.08	15.48	0.02	2.357	1.04	1.06	19.9	79.6	0.5	-5.87	0.86	0.85	2.08	3.8	0.003	0.72	0.0	0.04	15.46	0.00	2.524	2.97	1.51	12.5	87.3	0.1	-3.85	0.59	0.87	0.87	2.09	6247	798	5	0	7	0	0	logfile
✔	7WR7	32717	2025-06-04	2022-01-26	3.1	3.81	—	3.7	0.004	0.61	0.0	0.04	10.28	0.00	2.309	10.13	3.29	9.1	90.9	0.0	-4.53	0.72	0.72	2.80	3.8	0.005	0.76	0.0	0.05	14.19	0.00	2.339	11.80	1.88	12.0	88.0	0.0	-2.87	0.71	0.71	0.75	2.51	3995	496	4	0	10	0	0	logfile
✔	7WRF	32725	2025-06-26	2022-01-26	3.04	3.32	—	3.3	0.008	0.99	0.0	0.06	10.46	0.01	2.294	4.47	0.12	6.2	93.8	0.0	-3.74	0.71	0.81	3.17	3.3	0.005	0.70	0.0	0.04	15.45	0.00	2.332	10.36	1.83	5.1	94.9	0.0	0.44	0.81	0.72	0.84	2.36	30469	3720	8	0	9	0	0	logfile
✔	7WRC	32722	2025-06-26	2022-01-26	3.21	3.55	—	3.4	0.010	1.07	0.0	0.06	10.59	0.01	2.235	5.92	0.12	7.0	93.0	0.0	-3.90	0.71	0.77	2.04	3.4	0.003	0.66	0.0	0.04	14.67	0.00	2.334	9.39	1.86	4.6	95.4	0.0	0.82	1.73	0.73	0.83	1.43	30468	3720	8	0	8	0	0	logfile
✔	7WRD	32723	2025-06-26	2022-01-26	2.98	3.14	—	3.3	0.009	1.08	0.0	0.06	10.61	0.01	2.242	5.21	0.12	5.8	94.0	0.2	-3.61	0.68	0.80	2.80	3.1	0.005	0.77	0.0	0.04	15.93	0.00	2.294	10.88	2.79	5.2	94.8	0.0	0.41	1.35	0.68	0.82	2.08	30468	3720	8	0	8	0	0	logfile
✔	7WQW	32714	2025-06-04	2022-01-26	3.2	3.57	—	3.4	0.003	0.49	0.0	0.04	10.25	0.00	2.272	8.99	4.47	6.7	93.3	0.0	-4.30	0.77	0.75	2.23	3.4	0.003	0.72	0.0	0.05	14.83	0.00	2.381	10.53	2.59	9.6	90.4	0.0	-2.57	1.76	0.81	0.82	2.31	3983	496	4	0	9	0	0	logfile
✔	7WRi	32727	2025-06-06	2022-01-26	3.03	3.18	—	3.2	0.004	0.58	1.0	0.04	15.54	0.00	2.099	6.76	2.03	6.0	94.0	0.0	-4.19	0.73	0.80	2.23	3.1	0.003	0.61	0.0	0.04	16.81	0.00	2.016	5.49	1.59	6.6	93.4	0.0	-0.81	0.40	0.75	0.83	1.69	6431	790	4	0	2	0	0	logfile
✔	7TQS	26068	2025-06-29	2022-01-26	3.9	4.01	3.69	4.0	0.021	1.80	1.0	0.10	9.83	0.01	2.363	1.22	0.00	1.7	98.3	0.0	0.58	0.50	0.83	3.31	3.9	0.005	0.78	0.0	0.05	15.79	0.00	2.450	13.85	3.94	3.9	96.1	0.0	-0.66	1.31	0.47	0.83	2.31	34113	4249	27	0	207	0	0	logfile
✔	7WQZ	32716	2025-06-04	2022-01-26	3.7	4.25	—	4.0	0.003	0.55	0.0	0.04	10.73	0.00	2.272	9.90	2.13	8.5	91.5	0.0	-4.46	0.81	0.74	1.55	4.0	0.003	0.83	0.0	0.05	13.90	0.00	2.365	14.40	4.98	13.6	86.4	0.0	-2.94	0.71	0.83	0.78	1.75	3974	496	4	0	9	0	0	logfile
✔	7WRB	32721	2025-06-26	2022-01-26	2.88	3.16	—	3.3	0.006	1.01	0.0	0.05	10.44	0.01	2.276	6.29	0.12	6.0	93.9	0.1	-3.78	0.70	0.79	2.33	3.2	0.003	0.77	0.0	0.04	16.02	0.00	2.456	10.61	2.13	4.4	95.6	0.0	0.27	0.91	0.70	0.82	1.73	30376	3720	8	0	4	0	0	logfile
✔	7WR9	32719	2025-06-04	2022-01-26	3.24	3.43	—	3.4	0.006	1.05	1.0	0.06	17.10	0.01	2.350	3.92	1.15	9.6	89.9	0.5	-2.72	0.56	0.81	3.11	3.4	0.004	0.66	0.0	0.04	15.39	0.01	2.450	5.64	3.16	7.7	92.1	0.2	-1.70	0.34	0.56	0.84	2.52	3266	411	5	0	5	0	0	logfile
✔	7WRE	32724	2025-06-26	2022-01-26	2.52	3.32	—	3.1	0.013	1.21	0.0	0.07	10.86	0.01	2.212	6.94	0.24	6.2	93.5	0.3	-3.69	0.75	0.82	2.89	3.2	0.004	0.71	0.0	0.04	15.22	0.00	2.344	9.59	2.04	4.7	95.3	0.0	0.94	0.84	0.73	0.83	2.33	30468	3720	8	0	8	0	0	logfile
✔	7QXB	14197	2025-06-15	2022-01-26	3.9	4.10	3.83	3.4	0.011	1.49	6.0	0.10	22.18	0.01	2.203	7.40	0.47	4.6	95.0	0.3	-2.07	0.78	0.73	0.86	3.4	0.003	0.69	0.0	0.04	22.56	0.00	2.461	10.51	2.33	4.0	96.0	0.1	0.48	3.55	0.78	0.70	0.70	17053	1494	7	278	0	0	0	logfile
✔	7WRA	32720	2025-06-26	2022-01-26	2.98	3.19	—	3.3	0.006	0.99	0.0	0.05	10.56	0.01	2.231	6.76	0.60	6.0	94.0	0.0	-3.96	0.69	0.78	2.10	3.2	0.004	0.74	0.0	0.04	15.69	0.01	2.392	10.98	2.01	5.1	94.9	0.0	-0.37	0.86	0.70	0.81	1.55	30373	3720	5	0	1	0	0	logfile

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