Table showing results for June 2025

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

Table content is loading...

Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7WRA	32720	2025-06-26	2022-01-26	2.98	3.19	—	3.3	0.006	0.99	0.0	0.05	10.56	0.01	2.231	6.76	0.60	6.0	94.0	0.0	-3.96	0.69	0.78	2.10	3.2	0.004	0.74	0.0	0.04	15.69	0.01	2.392	10.98	2.01	5.1	94.9	0.0	-0.37	0.86	0.70	0.81	1.55	30373	3720	5	0	1	0	0	logfile
✔	7TQD	26066	2025-06-08	2022-01-26	2.9	3.57	2.94	3.4	0.004	0.54	0.0	0.04	12.12	0.00	1.960	3.21	0.00	2.0	98.0	0.0	0.95	0.80	0.82	3.99	3.4	0.002	0.59	0.0	0.04	14.72	0.00	2.027	3.73	0.99	2.0	98.0	0.0	1.26	2.47	0.80	0.83	3.83	8690	1096	4	0	5	0	0	logfile
✔	7WR9	32719	2025-06-04	2022-01-26	3.24	3.43	—	3.4	0.006	1.05	1.0	0.06	17.10	0.01	2.350	3.92	1.15	9.6	89.9	0.5	-2.72	0.56	0.81	3.11	3.4	0.004	0.66	0.0	0.04	15.39	0.01	2.450	5.64	3.16	7.7	92.1	0.2	-1.70	0.34	0.56	0.84	2.52	3266	411	5	0	5	0	0	logfile
✔	7QXA	14196	2025-06-14	2022-01-26	3.2	3.14	3.21	3.2	0.010	1.18	0.0	0.09	22.12	0.01	2.254	0.91	0.28	6.0	93.6	0.4	-3.16	0.69	0.71	3.06	3.1	0.006	0.77	0.0	0.04	22.27	0.01	2.354	9.30	1.77	5.9	93.9	0.2	-0.59	0.74	0.75	0.81	2.49	15576	1247	6	265	0	0	0	logfile
✔	7QXB	14197	2025-06-15	2022-01-26	3.9	4.10	3.83	3.4	0.011	1.49	6.0	0.10	22.18	0.01	2.203	7.40	0.47	4.6	95.0	0.3	-2.07	0.78	0.73	0.86	3.4	0.003	0.69	0.0	0.04	22.56	0.00	2.461	10.51	2.33	4.0	96.0	0.1	0.48	3.55	0.78	0.70	0.70	17053	1494	7	278	0	0	0	logfile
✔	7WRB	32721	2025-06-26	2022-01-26	2.88	3.16	—	3.3	0.006	1.01	0.0	0.05	10.44	0.01	2.276	6.29	0.12	6.0	93.9	0.1	-3.78	0.70	0.79	2.33	3.2	0.003	0.77	0.0	0.04	16.02	0.00	2.456	10.61	2.13	4.4	95.6	0.0	0.27	0.91	0.70	0.82	1.73	30376	3720	8	0	4	0	0	logfile
✔	7WQX	32715	2025-06-04	2022-01-26	2.7	2.26	—	3.2	0.003	0.53	0.0	0.04	11.77	0.00	2.181	9.03	2.56	6.0	94.0	0.0	-3.61	0.73	0.65	2.93	3.2	0.004	0.77	0.0	0.05	14.32	0.00	2.425	11.45	3.02	8.2	91.8	0.0	-1.81	0.81	0.76	0.69	2.40	4022	501	2	0	9	0	0	logfile
✔	7TPE	26052	2025-06-20	2022-01-25	4.0	4.59	—	4.0	0.013	1.77	6.0	0.09	12.98	0.01	2.501	0.20	1.83	8.6	90.3	1.1	-1.39	0.84	0.79	—	3.9	0.003	0.65	0.0	0.04	12.98	0.00	2.523	5.67	0.98	5.6	94.3	0.1	-0.07	0.46	0.86	0.84	—	23199	2983	18	0	58	0	0	logfile
✔	7QWG	14187	2025-06-04	2022-01-25	3.38	3.26	3.00	3.3	0.012	2.34	10.0	0.15	14.89	0.01	2.525	0.31	0.26	10.0	90.0	0.0	-3.26	0.41	0.82	4.16	3.3	0.003	0.66	0.0	0.05	16.80	0.00	2.607	7.22	3.17	9.8	90.2	0.0	-3.23	2.40	0.37	0.82	3.19	3258	405	3	0	0	0	0	logfile
✔	7TPF	26053	2025-06-20	2022-01-25	3.4	3.74	—	3.4	0.013	1.78	3.0	0.09	12.31	0.01	2.518	0.04	0.72	6.1	93.5	0.3	-0.86	0.84	0.86	3.82	3.4	0.003	0.61	0.0	0.04	12.80	0.00	2.460	3.10	0.72	3.9	96.0	0.1	0.46	0.45	0.85	0.87	3.29	23199	2983	18	0	58	0	0	logfile
✔	7QWM	14189	2025-06-04	2022-01-25	2.76	2.21	2.41	2.2	0.012	1.93	3.0	0.11	13.26	0.01	2.502	0.15	0.00	8.0	92.0	0.0	-2.89	0.34	0.80	6.86	2.2	0.003	0.64	0.0	0.05	17.50	0.00	2.583	8.31	2.65	6.5	93.5	0.0	-2.92	0.50	0.37	0.82	5.98	3255	405	3	0	0	0	0	logfile
✔	7TP7	26047	2025-06-20	2022-01-25	3.48	3.94	—	3.5	0.013	1.79	6.0	0.10	12.48	0.01	2.509	0.13	1.15	7.1	92.3	0.7	-1.13	0.84	0.84	3.20	3.5	0.004	0.64	0.0	0.04	13.05	0.00	2.559	4.07	0.64	4.2	95.7	0.1	0.05	0.48	0.85	0.86	2.68	23199	2983	18	0	58	0	0	logfile
✔	7QWL	14188	2025-06-04	2022-01-25	3.47	3.11	2.99	3.5	0.012	2.27	14.0	0.13	13.78	0.01	2.501	3.69	1.06	11.3	88.2	0.5	-3.35	0.45	0.81	5.36	3.5	0.003	0.70	0.0	0.05	16.02	0.00	2.619	7.68	3.97	6.5	93.5	0.0	-2.94	3.77	0.36	0.79	4.09	3258	405	3	0	0	0	0	logfile
✔	7TPL	26059	2025-06-17	2022-01-25	3.87	4.36	—	3.8	0.013	1.82	10.0	0.10	13.64	0.02	2.519	0.40	1.94	8.6	90.3	1.1	-1.79	0.84	0.83	2.53	3.8	0.004	0.69	0.0	0.04	14.25	0.00	2.471	6.07	1.53	6.7	93.2	0.2	-0.30	1.21	0.84	0.83	1.54	19992	2485	18	0	46	0	0	logfile
✔	7QWP	14190	2025-06-24	2022-01-25	3.4	3.68	—	3.6	0.007	0.99	8.0	0.06	13.76	0.00	2.165	14.09	7.21	6.5	93.2	0.3	-3.22	0.76	0.75	1.03	3.6	0.003	0.69	0.0	0.04	17.00	0.00	2.453	7.22	3.00	7.3	92.7	0.0	-0.98	0.89	0.82	0.84	1.30	29006	3685	8	72	0	0	0	logfile
✔	7TPC	26051	2025-06-20	2022-01-25	3.91	4.55	—	3.9	0.014	1.87	4.0	0.10	13.44	0.02	2.508	0.44	2.26	8.8	90.1	1.0	-2.02	0.83	0.77	0.71	3.9	0.003	0.69	0.0	0.04	13.60	0.00	2.408	7.97	1.58	6.0	93.9	0.1	-0.97	0.52	0.83	0.78	0.91	23199	2983	18	0	58	0	0	logfile
✔	7TP8	26048	2025-06-20	2022-01-25	3.4	3.77	—	3.4	0.013	1.79	6.0	0.10	12.52	0.01	2.519	0.07	0.98	6.3	92.8	0.9	-0.98	0.84	0.85	4.23	3.4	0.003	0.60	0.0	0.04	12.76	0.00	2.547	2.61	0.68	4.5	95.4	0.1	0.38	1.60	0.85	0.87	2.92	23199	2983	18	0	58	0	0	logfile
✔	7TPR	26062	2025-06-27	2022-01-25	2.39	2.27	2.48	2.1	0.004	0.61	0.0	0.04	12.51	0.00	2.103	8.50	0.14	6.5	93.1	0.5	-1.21	0.73	0.73	3.55	2.0	0.003	0.66	0.0	0.04	14.83	0.00	2.491	6.35	1.08	5.1	94.6	0.2	-0.47	1.03	0.77	0.79	3.04	31738	4074	8	0	0	0	0	logfile
✔	7TP9	26049	2025-06-20	2022-01-25	3.48	3.86	—	3.5	0.014	1.79	6.0	0.10	12.37	0.01	2.518	0.02	0.94	6.9	92.4	0.7	-0.96	0.84	0.84	3.41	3.5	0.002	0.60	0.0	0.04	12.87	0.00	2.503	2.97	0.64	4.1	95.8	0.1	0.56	0.49	0.85	0.86	2.81	23199	2983	18	0	58	0	0	logfile
✔	7TPi	26056	2025-06-18	2022-01-25	2.3	2.38	—	2.3	0.014	1.57	12.0	0.10	10.36	0.01	2.100	2.28	0.49	2.1	97.9	0.0	0.35	0.75	0.78	5.09	2.3	0.003	0.60	0.0	0.05	12.87	0.00	2.483	2.43	1.15	1.1	98.9	0.0	0.96	1.11	0.72	0.74	4.79	21168	2862	12	0	54	0	0	logfile

• ← previous
• Page 436 of 700
• next →