Table showing results for June 2025

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7QWM	14189	2025-06-04	2022-01-25	2.76	2.21	2.41	2.2	0.012	1.93	3.0	0.11	13.26	0.01	2.502	0.15	0.00	8.0	92.0	0.0	-2.89	0.34	0.80	6.86	2.2	0.003	0.64	0.0	0.05	17.50	0.00	2.583	8.31	2.65	6.5	93.5	0.0	-2.92	0.50	0.37	0.82	5.98	3255	405	3	0	0	0	0	logfile
✔	7TPi	26056	2025-06-18	2022-01-25	2.3	2.38	—	2.3	0.014	1.57	12.0	0.10	10.36	0.01	2.100	2.28	0.49	2.1	97.9	0.0	0.35	0.75	0.78	5.09	2.3	0.003	0.60	0.0	0.05	12.87	0.00	2.483	2.43	1.15	1.1	98.9	0.0	0.96	1.11	0.72	0.74	4.79	21168	2862	12	0	54	0	0	logfile
✔	7TPH	26055	2025-06-19	2022-01-25	3.58	4.03	—	3.6	0.013	1.78	5.0	0.10	12.02	0.01	2.501	0.16	1.01	7.2	92.3	0.6	-1.01	0.84	0.85	3.36	3.6	0.003	0.59	0.0	0.04	12.27	0.00	2.515	3.10	0.50	4.6	95.4	0.0	0.41	1.93	0.84	0.86	2.45	22180	2912	14	0	52	0	0	logfile
✔	7TPA	26050	2025-06-20	2022-01-25	3.6	3.99	—	3.6	0.013	1.78	3.0	0.10	12.53	0.01	2.510	0.00	1.11	6.5	92.8	0.8	-1.19	0.84	0.85	2.96	3.6	0.005	0.69	0.0	0.04	12.93	0.00	2.427	3.57	0.85	5.3	94.5	0.2	0.12	0.46	0.84	0.85	2.52	23199	2983	18	0	58	0	0	logfile
✔	7ToV	26039	2025-06-20	2022-01-24	3.16	3.39	—	3.2	0.014	1.83	5.0	0.10	12.15	0.01	2.515	0.07	0.89	5.8	93.7	0.4	-0.81	0.83	0.86	4.13	3.2	0.004	0.64	0.0	0.04	12.83	0.00	2.517	2.88	1.02	4.0	95.9	0.0	0.22	0.50	0.85	0.89	3.46	23199	2983	18	0	58	0	0	logfile
✔	7ToF	26031	2025-06-06	2022-01-24	3.7	3.97	—	4.0	0.003	0.60	0.0	0.04	15.20	0.01	2.163	16.14	0.12	4.4	95.6	0.0	-0.60	0.67	0.64	1.86	4.0	0.003	0.68	0.0	0.05	17.57	0.00	2.481	16.07	2.20	4.7	95.3	0.0	-0.74	0.62	0.68	0.66	0.88	7588	938	2	0	0	0	0	logfile
✔	7ToX	26040	2025-06-21	2022-01-24	3.62	4.01	—	3.6	0.014	1.78	1.0	0.10	13.09	0.01	2.515	0.14	1.35	6.7	92.8	0.5	-1.12	0.85	0.84	2.42	3.6	0.006	0.73	0.0	0.05	13.77	0.00	2.454	5.12	1.28	4.7	95.2	0.1	-0.13	0.47	0.85	0.85	1.96	24618	3041	20	0	61	0	0	logfile
✔	7ToU	26038	2025-06-21	2022-01-24	3.24	3.49	—	3.3	0.014	1.85	8.0	0.11	12.99	0.01	2.517	0.18	1.20	6.2	93.2	0.7	-1.00	0.84	0.85	3.52	3.3	0.003	0.64	0.0	0.04	13.48	0.00	2.531	3.63	1.46	4.0	96.0	0.0	0.25	0.56	0.86	0.87	2.60	24687	3050	20	0	61	0	0	logfile
✔	7TP2	26046	2025-06-21	2022-01-24	3.72	4.22	—	3.7	0.014	1.79	6.0	0.10	13.20	0.01	2.529	0.21	1.32	7.2	92.4	0.4	-1.34	0.85	0.84	2.45	3.7	0.002	0.60	0.0	0.04	13.50	0.00	2.575	4.17	0.79	3.1	96.8	0.1	0.32	0.49	0.85	0.84	1.79	24663	3047	20	0	61	0	0	logfile
✔	7ToZ	26042	2025-06-21	2022-01-24	4.07	4.80	—	4.0	0.014	1.87	11.0	0.10	14.63	0.02	2.509	0.68	2.87	8.7	90.4	0.8	-1.96	0.85	0.79	—	4.0	0.003	0.74	0.0	0.04	13.07	0.00	2.392	10.27	0.00	6.8	93.1	0.0	-0.76	0.56	0.85	0.80	—	24470	3026	20	0	60	0	0	logfile
✔	7WQ4	32699	2025-06-07	2022-01-24	2.6	2.77	—	2.9	0.007	0.61	0.0	0.05	8.52	0.00	1.399	6.69	0.45	0.8	99.2	0.0	-1.07	0.51	0.70	3.03	2.8	0.003	0.58	0.0	0.04	15.49	0.00	2.549	4.64	3.15	2.4	97.6	0.0	1.27	1.24	0.64	0.83	3.41	8290	1048	7	0	2	0	0	logfile
✔	7WQ3	32698	2025-06-08	2022-01-24	2.7	2.90	—	3.2	0.011	0.72	0.0	0.06	9.42	0.00	2.189	5.16	0.40	1.0	99.0	0.0	-1.34	0.39	0.47	0.48	3.0	0.004	0.64	0.0	0.04	14.94	0.00	2.413	5.70	2.83	2.2	97.8	0.0	1.10	1.87	0.64	0.82	3.05	9209	1160	7	0	5	0	0	logfile
✔	7TP1	26045	2025-06-21	2022-01-24	3.81	4.30	—	3.8	0.014	1.78	5.0	0.10	13.20	0.01	2.523	0.21	1.39	6.7	92.4	0.9	-1.32	0.85	0.84	1.81	3.8	0.003	0.63	0.0	0.04	13.57	0.00	2.431	4.93	0.90	4.3	95.5	0.1	0.19	0.50	0.86	0.84	1.50	24646	3046	20	0	61	0	0	logfile
✔	7TP0	26043	2025-06-21	2022-01-24	3.57	3.99	—	3.6	0.014	1.79	4.0	0.10	13.12	0.01	2.527	0.27	1.62	6.6	92.6	0.8	-1.08	0.85	0.85	2.66	3.6	0.002	0.61	0.0	0.04	13.50	0.00	2.454	3.81	0.83	4.0	95.9	0.1	0.43	1.19	0.86	0.85	1.97	24589	3040	20	0	61	0	0	logfile
✔	7ToY	26041	2025-06-21	2022-01-24	3.53	3.95	—	3.5	0.014	1.80	4.0	0.10	13.12	0.01	2.517	0.08	1.50	6.8	92.8	0.4	-1.10	0.85	0.84	2.97	3.5	0.003	0.63	0.0	0.04	13.71	0.00	2.526	4.27	1.35	3.6	96.3	0.1	0.40	0.50	0.85	0.85	1.99	24673	3049	20	0	61	0	0	logfile
✔	7WPZ	32693	2025-06-05	2022-01-24	3.8	3.48	—	3.6	0.014	1.48	1.0	0.11	11.15	0.01	2.431	1.73	0.74	2.2	97.4	0.4	-0.13	0.75	0.74	2.80	3.6	0.002	0.58	0.0	0.04	12.75	0.00	2.514	3.37	1.99	1.8	98.2	0.0	1.72	1.38	0.78	0.79	2.24	5756	787	8	0	15	0	0	logfile
✔	7WPo	32686	2025-06-06	2022-01-24	3.5	3.78	—	3.7	0.014	1.66	6.0	0.11	11.40	0.01	2.359	5.22	0.48	2.6	97.3	0.1	-0.13	0.70	0.79	3.06	3.7	0.003	0.66	0.0	0.04	13.74	0.00	2.402	5.76	1.77	1.5	98.5	0.0	2.17	1.77	0.69	0.84	2.53	6829	867	8	0	17	0	0	logfile
✔	7ToE	26030	2025-06-13	2022-01-24	3.0	3.29	—	3.3	0.003	0.59	0.0	0.04	14.04	0.00	2.201	8.94	0.12	3.9	96.0	0.1	-0.13	0.72	0.83	3.59	3.3	0.003	0.59	0.0	0.04	16.98	0.00	2.401	7.37	1.72	3.7	96.3	0.0	-0.18	0.48	0.74	0.86	3.23	15100	1868	4	0	0	0	0	logfile
✔	7WPP	32687	2025-06-16	2022-01-24	2.85	2.43	—	2.8	0.009	1.19	0.0	0.14	10.81	0.01	2.041	3.55	0.74	10.0	89.9	0.1	-4.29	0.70	0.74	3.42	2.8	0.007	1.02	2.0	0.05	16.21	0.01	2.189	6.64	2.94	7.1	92.9	0.0	-1.51	1.46	0.74	0.83	3.47	18252	2372	8	0	16	0	0	logfile
✔	7WPA	32680	2025-06-26	2022-01-23	2.77	2.26	—	2.1	0.004	0.79	2.0	0.05	13.93	0.01	2.327	3.39	0.45	5.4	94.5	0.0	-4.08	0.72	0.73	2.35	2.0	0.004	0.68	0.0	0.05	15.98	0.00	2.244	6.74	2.90	4.9	95.1	0.0	-1.29	0.62	0.76	0.81	2.82	30444	3774	20	0	47	0	0	logfile

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