Table showing results for June 2025

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7WPA	32680	2025-06-26	2022-01-23	2.77	2.26	—	2.1	0.004	0.79	2.0	0.05	13.93	0.01	2.327	3.39	0.45	5.4	94.5	0.0	-4.08	0.72	0.73	2.35	2.0	0.004	0.68	0.0	0.05	15.98	0.00	2.244	6.74	2.90	4.9	95.1	0.0	-1.29	0.62	0.76	0.81	2.82	30444	3774	20	0	47	0	0	logfile
✔	7WPB	32681	2025-06-05	2022-01-23	2.79	2.94	—	2.9	0.005	0.75	0.0	0.05	15.21	0.01	2.101	3.78	0.29	3.0	97.0	0.0	-4.67	0.68	0.86	4.00	2.9	0.004	0.63	0.0	0.04	16.48	0.00	1.966	6.15	1.72	2.8	97.2	0.0	0.03	0.46	0.71	0.88	3.61	6491	793	3	0	5	0	0	logfile
✔	7WPD	32683	2025-06-24	2022-01-23	3.18	2.39	—	2.1	0.003	0.59	2.0	0.08	12.30	0.00	1.866	5.06	0.03	3.1	96.9	0.0	0.82	0.68	0.69	2.15	2.1	0.003	0.62	0.0	0.04	14.25	0.00	2.463	6.38	1.67	3.7	96.3	0.0	0.20	0.96	0.71	0.74	2.10	27762	3628	11	0	37	0	0	logfile
✔	7WP6	32676	2025-06-05	2022-01-23	3.81	4.11	—	4.0	0.011	1.14	0.0	0.06	14.82	0.01	2.224	7.27	0.69	9.4	90.4	0.1	-3.82	0.70	0.79	2.25	4.1	0.005	0.81	0.0	0.04	16.99	0.00	2.536	11.29	5.49	7.8	92.1	0.1	-1.79	1.32	0.70	0.79	1.65	6748	861	9	0	3	0	0	logfile
✔	7WPE	32684	2025-06-27	2022-01-23	2.69	2.24	—	1.9	0.004	0.69	3.0	0.08	13.02	0.00	1.889	4.63	0.12	3.2	96.8	0.0	0.32	0.73	0.76	3.30	1.9	0.005	0.71	1.0	0.05	14.50	0.00	2.406	5.47	2.34	3.5	96.5	0.0	0.01	0.93	0.76	0.81	3.06	32038	4187	14	0	40	0	0	logfile
✔	7WP9	32679	2025-06-21	2022-01-23	2.56	2.20	—	1.9	0.004	0.80	1.0	0.05	14.32	0.01	2.294	4.05	0.40	4.9	95.0	0.1	-4.01	0.71	0.72	2.33	2.0	0.003	0.65	0.0	0.04	16.11	0.00	2.365	6.83	2.50	4.4	95.6	0.0	-1.34	1.00	0.76	0.80	2.43	25077	3141	13	0	28	0	0	logfile
✔	7WP8	32678	2025-06-05	2022-01-23	3.88	4.14	—	4.1	0.008	1.07	2.0	0.11	14.51	0.01	2.250	7.91	0.00	9.0	90.9	0.1	-4.12	0.69	0.80	2.68	4.0	0.007	0.86	0.0	0.05	16.45	0.01	2.461	15.59	3.14	12.2	87.8	0.0	-3.25	2.40	0.71	0.81	2.61	6797	861	9	0	3	0	0	logfile
✔	7WoP	32654	2025-06-05	2022-01-22	3.51	2.51	—	3.4	0.002	0.54	0.0	0.04	10.83	0.00	2.203	10.97	9.21	11.4	88.6	0.0	-4.81	0.64	0.66	1.96	3.4	0.005	0.81	0.0	0.05	15.16	0.00	2.432	16.41	6.50	18.1	81.9	0.0	-3.59	1.28	0.65	0.69	2.23	5107	669	3	0	0	0	0	logfile
✔	7To4	26029	2025-06-24	2022-01-22	3.4	2.97	—	2.1	0.015	2.08	20.0	0.13	16.22	0.01	2.009	5.62	2.60	7.2	92.0	0.8	-2.22	0.85	0.82	2.79	2.0	0.005	0.89	0.0	0.05	15.10	0.00	2.293	10.45	3.28	5.9	94.1	0.0	-0.59	0.68	0.86	0.83	2.35	27672	3350	35	0	101	0	0	logfile
✔	7WP5	32669	2025-06-04	2022-01-22	3.9	4.08	—	4.0	0.005	1.03	0.0	0.06	13.95	0.01	2.278	4.75	0.56	9.1	90.7	0.2	-4.27	0.59	0.74	2.00	4.0	0.003	0.72	0.0	0.04	16.15	0.00	2.500	8.89	4.20	9.5	90.2	0.2	-2.78	0.64	0.59	0.73	1.57	3340	425	4	0	2	0	0	logfile
✔	7WoN	32652	2025-06-04	2022-01-22	3.9	4.07	—	4.0	0.006	0.98	0.0	0.06	16.81	0.01	2.035	5.41	0.28	9.8	90.2	0.0	-4.42	0.67	0.83	2.49	4.0	0.004	0.76	0.0	0.05	16.33	0.00	2.596	8.04	3.10	10.0	90.0	0.0	-2.81	0.99	0.67	0.83	2.31	3318	425	4	0	2	0	0	logfile
✔	7TNZ	26024	2025-06-05	2022-01-22	3.54	3.70	—	3.7	0.012	1.17	0.0	0.07	15.34	0.00	2.258	8.16	0.66	6.8	92.8	0.4	-2.66	0.71	0.81	2.02	3.7	0.004	0.64	0.0	0.04	17.52	0.00	2.498	8.24	2.63	7.4	92.6	0.0	-0.69	1.20	0.72	0.81	1.64	5986	680	4	23	2	0	0	logfile
✔	7WoQ	32655	2025-06-22	2022-01-22	3.47	2.83	—	3.2	0.003	0.57	0.0	0.05	9.33	0.02	2.216	9.29	5.15	7.8	91.9	0.3	-4.15	0.75	0.74	2.14	3.1	0.005	0.77	0.0	0.05	13.81	0.00	2.435	11.21	4.20	9.5	90.5	0.0	-1.96	1.31	0.79	0.80	2.23	26221	3328	7	0	28	0	0	logfile
✔	7To0	26025	2025-06-05	2022-01-22	3.5	3.68	—	3.7	0.014	1.17	0.0	0.07	16.44	0.00	2.288	8.07	0.82	7.5	92.5	0.0	-3.00	0.72	0.81	2.21	3.7	0.003	0.59	0.0	0.04	17.89	0.00	2.551	8.58	2.96	8.8	91.2	0.0	-0.39	0.55	0.74	0.82	2.39	5989	682	4	24	1	0	0	logfile
✔	7WoU	32659	2025-06-27	2022-01-22	3.47	2.44	—	2.1	0.003	0.58	0.0	0.04	9.57	0.01	2.208	8.19	5.49	8.0	92.0	0.0	-4.25	0.67	0.67	2.06	2.2	0.005	0.85	2.0	0.05	13.70	0.00	1.935	10.13	4.03	9.8	90.2	0.0	-2.25	1.26	0.70	0.74	2.04	31397	4029	10	0	23	0	0	logfile
✔	7WoR	32656	2025-06-25	2022-01-22	3.7	2.87	—	3.2	0.003	0.54	0.0	0.05	9.28	0.01	2.216	8.02	5.34	7.7	92.2	0.1	-4.04	0.72	0.71	1.83	3.1	0.004	0.73	0.0	0.05	13.29	0.00	2.344	9.36	3.83	8.5	91.5	0.0	-2.34	0.76	0.74	0.74	1.68	29670	3799	9	0	23	0	0	logfile
✔	7WoS	32657	2025-06-27	2022-01-22	3.91	3.20	—	3.1	0.003	0.53	1.0	0.04	9.08	0.01	2.210	8.37	5.30	7.0	92.9	0.1	-3.97	0.73	0.71	1.37	3.5	0.005	0.88	0.0	0.05	13.69	0.01	1.762	16.34	4.57	9.8	90.1	0.1	-2.13	0.86	0.75	0.74	1.70	31411	4034	10	0	21	0	0	logfile
✔	7TNX	26022	2025-06-05	2022-01-22	3.54	3.76	—	3.8	0.011	1.08	0.0	0.06	15.46	0.00	2.247	6.37	0.17	7.7	92.2	0.2	-2.75	0.70	0.80	2.39	3.8	0.004	0.67	0.0	0.04	17.17	0.00	2.431	7.79	3.25	8.0	92.0	0.0	-0.16	0.48	0.67	0.78	2.64	5753	647	4	23	2	0	0	logfile
✔	7WoV	32660	2025-06-29	2022-01-22	3.87	2.62	—	2.1	0.003	0.55	0.0	0.04	9.47	0.01	2.137	8.14	5.98	8.0	91.8	0.2	-4.25	0.67	0.66	1.83	2.2	0.004	0.82	1.0	0.05	13.30	0.00	1.997	11.67	4.62	9.9	90.1	0.0	-2.52	1.30	0.68	0.68	1.73	34884	4505	12	0	18	0	0	logfile
✔	7To3	26028	2025-06-13	2022-01-22	2.74	3.49	2.83	3.3	0.003	0.57	0.0	0.04	12.15	0.00	2.062	3.20	0.00	1.9	98.1	0.0	0.85	0.83	0.85	3.77	3.3	0.003	0.60	0.0	0.04	13.96	0.00	1.367	2.72	0.39	2.2	97.8	0.0	0.97	1.32	0.82	0.85	3.75	14764	1850	6	0	10	0	0	logfile

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