Table showing results for June 2025

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7To3	26028	2025-06-13	2022-01-22	2.74	3.49	2.83	3.3	0.003	0.57	0.0	0.04	12.15	0.00	2.062	3.20	0.00	1.9	98.1	0.0	0.85	0.83	0.85	3.77	3.3	0.003	0.60	0.0	0.04	13.96	0.00	1.367	2.72	0.39	2.2	97.8	0.0	0.97	1.32	0.82	0.85	3.75	14764	1850	6	0	10	0	0	logfile
✔	7WoA	32646	2025-06-27	2022-01-21	3.25	2.98	—	3.2	0.002	0.45	0.0	0.04	9.46	0.00	2.229	6.56	4.23	3.8	96.2	0.0	-3.46	0.86	0.78	2.52	3.2	0.004	0.81	4.0	0.04	13.79	0.00	2.184	8.28	2.96	6.0	94.0	0.0	-1.67	1.15	0.89	0.85	2.79	31952	4060	10	0	39	0	0	logfile
✔	7TNL	26013	2025-06-17	2022-01-21	3.59	3.31	—	3.4	0.009	1.03	0.0	0.06	11.86	0.01	2.246	4.01	0.38	4.6	95.1	0.2	-4.39	0.72	0.83	3.45	3.4	0.004	0.65	0.0	0.04	15.24	0.00	2.527	7.56	2.64	4.1	95.9	0.0	0.81	1.40	0.73	0.83	2.82	19434	2486	10	0	4	0	0	logfile
✔	7QVF	14176	2025-06-05	2022-01-21	3.64	3.54	3.42	4.1	0.012	2.10	22.0	0.12	15.51	0.01	2.525	0.00	0.53	6.0	94.0	0.0	-2.41	0.43	0.77	3.90	3.6	0.004	0.80	0.0	0.05	16.58	0.00	2.568	11.83	3.57	5.9	94.1	0.0	-2.41	3.82	0.39	0.74	3.91	6516	810	6	0	0	0	0	logfile
✔	7QVC	14174	2025-06-04	2022-01-21	2.64	2.62	2.62	2.6	0.012	2.09	10.0	0.12	15.49	0.01	2.525	0.00	0.53	5.8	94.2	0.0	-2.45	0.43	0.86	7.41	2.7	0.006	0.78	0.0	0.06	18.05	0.00	2.556	7.84	4.76	4.8	95.2	0.0	-2.40	0.98	0.42	0.89	5.70	3255	405	3	0	0	0	0	logfile
✔	7WoC	32648	2025-06-05	2022-01-21	3.35	3.49	—	3.4	0.002	0.48	0.0	0.04	9.58	0.00	2.288	6.75	4.60	6.3	93.7	0.0	-4.80	0.72	0.76	2.37	3.4	0.004	0.74	0.0	0.05	14.80	0.00	2.498	8.99	4.79	11.2	88.8	0.0	-3.04	2.05	0.75	0.84	2.46	4746	610	4	0	1	0	0	logfile
✔	7WoG	32651	2025-06-04	2022-01-21	4.06	2.95	—	2.0	0.001	0.41	0.0	0.04	8.09	0.00	2.293	10.22	3.78	8.0	92.0	0.0	-3.98	0.51	0.51	—	2.2	0.003	0.68	0.0	0.04	10.80	0.00	2.460	12.81	0.00	13.1	86.9	0.0	-2.85	0.96	0.53	0.54	—	3362	433	3	0	0	0	0	logfile
✔	7TNN	26015	2025-06-17	2022-01-21	3.91	3.40	—	3.6	0.005	0.92	0.0	0.06	11.69	0.01	2.257	4.06	0.34	2.8	97.1	0.1	-2.09	0.71	0.78	2.40	3.4	0.003	0.66	0.0	0.04	15.70	0.00	2.473	9.95	2.64	3.8	96.2	0.0	0.85	1.43	0.72	0.80	1.74	19439	2486	10	0	4	0	0	logfile
✔	7TNW	26021	2025-06-24	2022-01-21	3.1	2.85	—	2.9	0.014	2.02	21.0	0.13	16.81	0.01	2.197	5.99	1.81	7.7	91.5	0.8	-1.73	0.85	0.84	3.50	2.2	0.004	0.88	0.0	0.05	15.44	0.00	2.379	7.61	2.56	5.4	94.6	0.0	-0.23	1.04	0.86	0.84	2.80	27846	3357	39	0	111	0	0	logfile
✔	7TNP	26017	2025-06-16	2022-01-21	3.96	3.45	—	3.6	0.008	1.09	0.0	0.06	12.46	0.01	2.280	4.16	0.70	5.4	94.5	0.1	-4.96	0.71	0.76	2.12	3.4	0.003	0.77	0.0	0.04	15.52	0.00	2.256	12.35	2.84	4.3	95.6	0.1	0.30	0.90	0.71	0.77	1.65	18840	2408	12	0	4	0	0	logfile
✔	7TNo	26016	2025-06-16	2022-01-21	4.02	3.34	—	3.4	0.004	0.94	0.0	0.05	12.11	0.01	2.023	4.43	0.65	3.7	96.1	0.2	-5.12	0.69	0.76	—	3.4	0.003	0.69	0.0	0.04	13.32	0.00	2.395	9.98	0.00	3.1	96.9	0.0	0.49	0.90	0.69	0.76	—	18810	2405	11	0	4	0	0	logfile
✔	7QVM	14180	2025-06-07	2022-01-21	3.25	3.83	—	3.6	0.003	0.64	0.0	0.04	12.94	0.00	2.156	11.45	0.00	3.6	96.4	0.0	0.22	0.72	0.78	2.24	3.6	0.004	1.03	1.0	0.05	15.66	0.00	2.421	12.63	1.51	3.8	96.2	0.0	0.35	0.79	0.72	0.81	1.95	8528	1094	7	0	1	0	0	logfile
✔	7TNJ	26011	2025-06-16	2022-01-21	4.02	3.16	—	3.3	0.005	0.94	0.0	0.05	11.63	0.01	2.246	3.87	0.20	3.6	96.4	0.0	-4.89	0.65	0.72	—	3.1	0.003	0.69	0.0	0.04	13.22	0.00	2.396	10.34	0.05	2.9	97.1	0.0	0.52	1.28	0.66	0.74	—	18810	2402	8	0	4	0	0	logfile
✔	7TNK	26012	2025-06-16	2022-01-21	4.5	3.85	—	3.8	0.005	1.01	0.0	0.05	11.81	0.01	2.244	4.82	0.40	5.0	94.9	0.1	-4.97	0.71	0.73	—	3.8	0.003	0.69	0.0	0.04	13.02	0.00	2.485	11.30	0.00	4.4	95.6	0.0	-0.21	0.93	0.72	0.73	—	18934	2419	9	0	4	0	0	logfile
✘	7TNM	26014	2025-06-17	2022-01-21	4.74	3.56	—	3.5	0.007	1.08	0.0	0.06	12.01	0.01	2.214	5.88	0.86	2.6	97.0	0.5	-1.48	0.68	0.68	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	19448	2486	10	0	4	0	0	logfile
✔	7Wo9	32643	2025-06-11	2022-01-20	2.81	3.01	—	3.0	0.002	0.50	0.0	0.04	13.97	0.00	2.227	5.86	0.00	4.2	95.8	0.0	1.49	0.70	0.78	2.04	3.0	0.002	0.51	0.0	0.04	15.96	0.00	2.474	4.93	0.87	4.3	95.7	0.0	1.97	0.74	0.72	0.81	1.90	12743	1581	1	0	0	0	0	logfile
✘	7TMW	26003	2025-06-06	2022-01-20	3.2	2.40	3.16	3.2	0.003	0.70	0.0	0.05	13.22	0.01	2.193	9.31	0.00	2.6	97.4	0.0	-0.28	0.71	0.64	1.01	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	7320	930	4	0	0	0	0	logfile
✔	7WNZ	32636	2025-06-07	2022-01-20	3.4	3.47	—	4.0	0.003	0.52	0.0	0.05	10.39	0.00	2.177	6.80	0.00	6.3	93.7	0.0	-3.33	0.51	0.70	4.51	4.0	0.003	0.67	0.0	0.05	12.61	0.00	2.419	9.60	0.85	8.1	91.9	0.0	-5.97	0.52	0.32	0.68	5.41	9300	650	10	0	0	0	4780	logfile
✔	7Wo0	32637	2025-06-11	2022-01-20	2.7	2.93	2.56	2.9	0.007	0.91	0.0	0.06	15.45	0.01	2.538	5.18	0.00	3.2	96.8	0.0	-3.84	0.55	0.81	5.89	2.9	0.003	0.52	0.0	0.05	16.46	0.00	2.532	3.10	0.46	2.4	97.6	0.0	-2.58	0.59	0.54	0.85	5.16	12964	910	14	0	0	0	6622	logfile
✔	7Wo7	32641	2025-06-05	2022-01-20	3.8	3.99	—	3.9	0.003	0.71	0.0	0.04	11.24	0.00	2.163	6.93	8.82	9.7	90.3	0.0	-4.70	0.72	0.74	1.98	3.9	0.003	0.71	0.0	0.05	15.17	0.01	2.496	10.70	3.86	12.7	87.3	0.0	-3.13	1.78	0.74	0.75	2.02	4870	634	4	0	1	0	0	logfile

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