Table showing results for June 2025

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7Wo9	32643	2025-06-11	2022-01-20	2.81	3.01	—	3.0	0.002	0.50	0.0	0.04	13.97	0.00	2.227	5.86	0.00	4.2	95.8	0.0	1.49	0.70	0.78	2.04	3.0	0.002	0.51	0.0	0.04	15.96	0.00	2.474	4.93	0.87	4.3	95.7	0.0	1.97	0.74	0.72	0.81	1.90	12743	1581	1	0	0	0	0	logfile
✔	7QV5	14167	2025-06-05	2022-01-19	3.0	3.03	1.95	3.0	0.013	0.44	0.0	0.06	9.44	0.00	2.689	1.08	0.00	6.2	93.8	0.0	-2.64	0.46	0.86	7.89	3.1	0.050	0.37	0.0	0.06	12.17	0.00	2.302	0.00	0.00	1.0	99.0	0.0	-2.06	0.87	0.50	0.90	6.63	5562	342	45	0	18	0	2997	logfile
✔	7TMC	25995	2025-06-04	2022-01-19	3.25	3.24	2.93	6.7	0.005	0.88	0.0	0.07	18.02	0.01	2.152	13.78	0.00	9.5	90.5	0.0	-4.08	0.21	0.31	-0.39	3.4	0.004	0.99	0.0	0.06	16.51	0.01	2.500	13.19	4.50	10.5	89.5	0.0	-4.21	1.85	0.34	0.76	3.70	3426	405	6	0	12	0	0	logfile
✔	7WNQ	32633	2025-06-07	2022-01-19	2.7	2.91	2.71	3.0	0.012	1.20	6.0	0.07	9.17	0.01	2.155	1.80	0.63	3.6	96.4	0.0	-5.53	0.68	0.86	4.76	3.0	0.003	0.63	0.0	0.04	14.07	0.00	2.614	3.03	1.90	2.5	97.5	0.0	1.62	1.23	0.66	0.86	3.60	8847	1104	3	0	0	0	0	logfile
✘	7TM0	25992	2025-06-24	2022-01-19	3.1	3.24	3.20	3.2	0.010	1.41	0.0	0.08	8.59	0.01	2.264	1.47	0.17	2.4	97.6	0.0	0.62	0.73	0.76	3.91	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	27963	4401	19	0	52	0	0	logfile
✔	7TMM	25996	2025-06-28	2022-01-19	3.5	3.65	—	3.6	0.005	0.54	0.0	0.04	11.40	0.00	2.195	7.40	0.04	3.8	96.2	0.0	1.51	0.82	0.84	3.00	3.6	0.003	0.51	0.0	0.04	12.94	0.00	2.466	6.40	2.26	2.8	97.2	0.0	1.81	1.06	0.82	0.84	2.36	33713	5236	17	0	1	0	0	logfile
✔	7TLY	25990	2025-06-04	2022-01-19	3.0	3.01	2.95	3.0	0.010	1.33	2.0	0.08	12.98	0.00	2.556	1.69	0.00	2.5	97.5	0.0	0.36	0.64	0.76	4.98	3.0	0.002	0.58	0.0	0.04	13.52	0.00	2.573	3.71	2.81	1.5	98.5	0.0	-1.08	1.03	0.68	0.82	4.41	3105	408	4	0	4	0	0	logfile
✔	7TMQ	25999	2025-06-27	2022-01-19	3.3	3.42	—	3.4	0.004	0.57	2.0	0.04	12.67	0.00	2.026	9.95	0.38	2.7	97.3	0.0	1.28	0.77	0.83	3.33	3.3	0.006	0.89	3.0	0.05	14.20	0.01	1.909	9.76	2.44	3.6	96.4	0.0	1.03	0.28	0.80	0.87	2.97	31642	4736	16	0	2	0	0	logfile
✔	7TMo	25997	2025-06-27	2022-01-19	3.3	3.50	—	3.4	0.003	0.51	0.0	0.04	12.53	0.00	1.942	8.59	0.18	2.9	97.1	0.0	1.41	0.77	0.82	3.41	3.4	0.004	0.56	0.0	0.04	14.02	0.00	1.864	8.32	2.65	3.5	96.5	0.0	1.42	1.07	0.79	0.85	3.12	31559	4816	17	0	4	0	0	logfile
✔	7TMP	25998	2025-06-27	2022-01-19	3.3	3.47	—	3.4	0.004	0.54	0.0	0.04	12.38	0.00	1.989	8.91	0.38	3.5	96.5	0.1	1.23	0.78	0.84	3.41	3.4	0.004	0.56	0.0	0.04	14.23	0.00	1.910	7.70	2.43	3.1	96.9	0.0	1.29	0.29	0.80	0.86	2.94	32105	4805	16	0	2	0	0	logfile
✔	7QV6	14168	2025-06-05	2022-01-19	3.5	3.33	3.32	3.5	0.011	0.59	0.0	0.05	11.56	0.00	2.480	1.86	0.00	1.1	98.9	0.0	-1.85	0.39	0.86	5.72	3.5	0.002	0.43	0.0	0.06	11.90	0.00	2.507	1.24	0.00	0.0	100.0	0.0	0.71	0.41	0.41	0.86	5.96	4842	306	18	0	0	0	2556	logfile
✔	7TLZ	25991	2025-06-04	2022-01-19	3.3	3.47	3.24	3.4	0.011	1.31	0.0	0.08	9.09	0.01	2.581	0.87	0.31	2.8	97.2	0.0	1.02	0.68	0.81	5.51	3.4	0.004	0.67	0.0	0.05	12.34	0.00	2.592	3.06	0.62	4.4	95.6	0.0	0.31	1.01	0.67	0.87	5.52	3621	475	4	0	6	0	0	logfile
✔	7QUN	14149	2025-06-18	2022-01-18	2.1	2.22	—	2.2	0.005	0.72	0.0	0.05	15.64	0.00	2.230	4.57	0.88	2.1	97.9	0.0	0.29	0.63	0.77	5.98	2.2	0.003	0.65	0.0	0.05	15.49	0.00	2.464	1.57	0.88	1.9	98.1	0.0	0.19	0.23	0.74	0.86	6.05	21094	2773	8	0	4	0	0	logfile
✔	7QUR	14152	2025-06-23	2022-01-18	2.27	2.80	—	2.7	0.005	0.74	0.0	0.05	15.74	0.00	2.145	4.96	1.01	3.9	96.0	0.1	-0.13	0.73	0.87	4.69	2.7	0.003	0.63	0.0	0.05	14.95	0.00	2.484	3.51	1.39	3.9	95.9	0.2	-0.19	0.26	0.70	0.87	4.90	27174	3303	21	0	75	282	0	logfile
✔	7TLJ	25989	2025-06-24	2022-01-18	2.91	3.77	—	3.6	0.008	0.79	0.0	0.04	14.13	0.01	2.009	3.99	1.34	3.1	96.9	0.1	0.26	0.75	0.86	4.48	3.6	0.005	0.58	0.0	0.04	14.65	0.00	2.246	4.73	0.71	2.6	97.4	0.1	1.95	0.48	0.68	0.86	3.78	27753	1774	14	0	12	0	13511	logfile
✔	7TLB	25986	2025-06-19	2022-01-18	3.06	3.26	—	3.2	0.012	1.74	1.0	0.09	13.14	0.01	2.531	0.11	0.82	5.3	94.7	0.1	-1.00	0.54	0.56	2.31	3.2	0.009	0.75	0.0	0.05	15.39	0.00	2.392	7.07	2.31	4.3	95.7	0.0	-0.45	1.51	0.76	0.86	3.07	22806	2916	3	0	0	0	0	logfile
✔	7QUQ	14151	2025-06-16	2022-01-18	2.6	2.44	—	2.8	0.009	0.94	0.0	0.05	13.76	0.01	2.144	15.78	0.10	4.7	95.3	0.0	-1.38	0.64	0.65	1.63	2.8	0.004	0.77	0.0	0.05	17.02	0.00	2.405	18.17	2.98	4.7	95.3	0.0	-1.09	1.23	0.67	0.70	1.57	19095	2457	12	0	6	0	0	logfile
✔	7TLD	25988	2025-06-19	2022-01-18	2.89	3.35	—	3.3	0.013	1.80	0.0	0.09	13.31	0.01	2.524	0.07	0.94	5.2	94.6	0.2	-1.25	0.33	0.48	3.75	3.3	0.003	0.61	0.0	0.04	14.91	0.00	2.509	4.39	1.52	3.0	97.0	0.0	0.32	0.54	0.61	0.78	2.86	22812	2916	3	0	0	0	0	logfile
✔	7QUS	14153	2025-06-23	2022-01-18	2.39	2.81	—	2.7	0.004	0.62	0.0	0.04	15.76	0.00	2.212	5.50	1.46	3.6	96.3	0.2	0.03	0.70	0.85	3.68	2.7	0.006	0.75	0.0	0.05	15.59	0.00	2.500	4.26	2.16	4.1	95.7	0.2	-0.27	0.45	0.73	0.89	4.87	26742	3303	18	0	69	0	0	logfile
✔	7TL1	25983	2025-06-22	2022-01-18	3.5	3.79	3.46	3.6	0.004	0.73	0.0	0.05	11.66	0.01	2.302	3.28	0.00	3.6	96.4	0.0	-0.64	0.85	0.83	2.56	3.6	0.002	0.51	0.0	0.04	12.25	0.00	2.402	4.61	0.40	2.9	97.1	0.0	0.54	0.29	0.85	0.84	2.46	25109	3138	11	0	38	0	0	logfile

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