Table showing results for June 2025

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7TL9	25984	2025-06-21	2022-01-18	3.5	3.83	3.51	3.5	0.004	0.80	0.0	0.06	14.38	0.01	2.260	3.60	0.00	3.9	96.1	0.0	-0.78	0.85	0.83	2.56	3.5	0.003	0.57	0.0	0.04	13.71	0.00	2.478	4.73	0.56	3.3	96.7	0.0	0.36	0.30	0.85	0.84	2.43	25016	3083	24	0	60	0	0	logfile
✔	7TLA	25985	2025-06-20	2022-01-18	3.13	3.36	—	3.3	0.012	1.76	3.0	0.09	13.37	0.01	2.522	0.09	1.12	6.0	93.7	0.3	-1.09	0.58	0.61	4.05	3.3	0.004	0.72	2.0	0.04	14.95	0.00	2.121	5.64	1.90	3.5	96.5	0.0	0.13	0.61	0.75	0.85	3.32	23052	2948	3	0	0	0	0	logfile
✔	7TL1	25983	2025-06-22	2022-01-18	3.5	3.79	3.46	3.6	0.004	0.73	0.0	0.05	11.66	0.01	2.302	3.28	0.00	3.6	96.4	0.0	-0.64	0.85	0.83	2.56	3.6	0.002	0.51	0.0	0.04	12.25	0.00	2.402	4.61	0.40	2.9	97.1	0.0	0.54	0.29	0.85	0.84	2.46	25109	3138	11	0	38	0	0	logfile
✔	7TJX	25939	2025-06-19	2022-01-17	4.0	3.84	4.09	3.9	0.003	0.62	0.0	0.05	12.05	0.00	1.858	2.49	0.05	1.8	98.2	0.0	0.09	0.60	0.79	—	3.9	0.003	0.67	0.0	0.04	16.03	0.00	1.863	8.70	4.40	2.3	97.7	0.0	0.66	1.47	0.61	0.80	—	21663	3072	12	0	11	0	0	logfile
✔	7QUD	14148	2025-06-05	2022-01-17	3.47	3.26	—	3.3	0.004	0.62	0.0	0.04	16.74	0.01	2.033	11.70	0.00	3.5	96.5	0.0	-0.13	0.67	0.77	2.12	3.2	0.004	0.65	0.0	0.04	18.34	0.01	1.919	9.57	3.06	3.0	97.0	0.0	0.46	0.44	0.67	0.78	1.97	6696	844	4	0	3	0	0	logfile
✔	7TKo	25976	2025-06-17	2022-01-17	4.8	7.71	5.69	4.4	0.019	2.23	0.0	0.00	6.74	0.01	2.314	0.12	0.00	4.8	93.9	1.4	-0.54	0.62	0.65	—	4.4	0.006	1.03	0.0	0.00	6.48	0.01	2.274	7.43	0.00	12.5	87.3	0.3	-0.83	0.86	0.84	0.82	—	20229	5056	27	0	0	0	0	logfile
✔	7TK8	25960	2025-06-17	2022-01-17	4.7	7.79	13.30	4.4	0.019	2.21	0.0	0.00	6.68	0.01	2.390	0.08	0.00	4.1	94.4	1.5	-0.46	0.60	0.62	—	4.4	0.005	0.87	0.0	0.00	5.67	0.00	2.360	4.24	0.00	10.0	89.7	0.2	-0.50	0.85	0.81	0.81	—	20227	5056	27	0	0	0	0	logfile
✔	7TJT	25931	2025-06-20	2022-01-17	3.2	3.46	3.29	3.4	0.003	0.63	0.0	0.05	13.04	0.00	1.991	3.26	0.00	1.2	98.8	0.0	0.60	0.75	0.85	3.19	3.4	0.003	0.54	0.0	0.04	14.83	0.00	1.964	4.31	1.05	1.8	98.2	0.0	1.65	2.96	0.79	0.87	2.27	23129	3099	11	0	7	0	0	logfile
✔	7TKT	25981	2025-06-12	2022-01-17	3.6	3.75	3.74	3.7	0.007	1.26	0.0	0.04	21.05	0.01	2.224	6.30	0.00	4.7	95.3	0.0	0.63	0.72	0.81	2.05	3.7	0.003	0.73	0.0	0.04	18.38	0.00	2.492	6.55	0.30	4.5	95.5	0.0	1.08	1.94	0.73	0.82	2.23	13252	1560	8	0	56	0	0	logfile
✔	7TJV	25933	2025-06-20	2022-01-17	3.6	3.57	3.64	3.6	0.003	0.66	0.0	0.05	12.84	0.01	1.836	2.06	0.00	1.9	98.1	0.0	0.21	0.62	0.81	2.69	3.6	0.003	0.64	0.0	0.04	16.41	0.00	1.923	6.84	3.14	2.3	97.7	0.0	0.73	1.46	0.62	0.82	1.86	23170	3110	12	0	10	0	0	logfile
✔	7TJZ	25947	2025-06-17	2022-01-17	4.4	7.00	4.53	4.2	0.019	2.21	0.0	0.00	6.67	0.01	2.384	0.19	0.00	4.2	94.2	1.6	-0.41	0.58	0.63	—	4.3	0.006	0.97	0.0	0.00	5.84	0.00	2.415	3.93	0.00	11.8	87.9	0.3	-0.69	0.76	0.82	0.83	—	20228	5056	27	0	0	0	0	logfile
✔	7WN4	32621	2025-06-16	2022-01-17	3.4	3.53	—	3.4	0.007	0.99	0.0	0.05	14.19	0.01	2.137	11.57	0.15	13.5	86.3	0.2	-3.02	0.83	0.85	2.65	3.4	0.003	0.69	0.0	0.04	15.79	0.01	2.234	6.51	1.67	8.0	92.0	0.0	-1.96	1.05	0.82	0.85	2.24	18224	2372	8	0	14	0	0	logfile
✔	7TKH	25969	2025-06-17	2022-01-17	4.4	7.29	4.44	4.2	0.019	2.19	0.0	0.00	6.81	0.01	2.385	0.08	0.00	3.9	94.7	1.4	-0.35	0.59	0.62	—	4.2	0.003	0.73	0.0	0.00	4.58	0.00	2.504	1.31	0.00	7.9	91.8	0.2	1.08	1.63	0.84	0.84	—	20228	5056	27	0	0	0	0	logfile
✔	7WN1	32619	2025-06-04	2022-01-17	3.11	3.41	—	3.3	0.007	0.65	0.0	0.04	13.87	0.00	2.246	7.77	0.00	3.7	96.3	0.0	1.00	0.64	0.87	3.64	3.3	0.003	0.58	0.0	0.04	16.14	0.00	2.484	7.01	3.26	4.5	95.5	0.0	1.81	0.36	0.63	0.88	3.17	3901	493	3	0	1	0	0	logfile
✔	7TKP	25977	2025-06-17	2022-01-17	4.6	7.57	4.95	4.4	0.019	2.20	0.0	0.00	6.68	0.01	2.352	0.12	0.00	4.2	94.5	1.3	-0.50	0.60	0.63	—	4.4	0.003	0.70	0.0	0.00	4.38	0.00	2.475	0.96	0.00	6.5	93.3	0.2	1.36	0.75	0.79	0.81	—	20228	5056	27	0	0	0	0	logfile
✔	7TJW	25934	2025-06-19	2022-01-17	4.0	3.71	4.04	3.8	0.003	0.64	0.0	0.05	13.06	0.00	1.855	2.42	0.00	2.2	97.8	0.0	0.19	0.61	0.79	—	3.8	0.005	0.73	0.0	0.05	16.11	0.00	1.820	8.77	4.25	3.5	96.5	0.0	0.88	0.61	0.62	0.80	—	22500	3097	12	0	10	0	0	logfile
✔	7TKG	25968	2025-06-17	2022-01-17	4.5	7.60	4.54	4.2	0.019	2.20	0.0	0.00	6.95	0.01	2.361	0.08	0.00	4.3	94.2	1.5	-0.60	0.58	0.61	—	4.2	0.006	0.99	0.0	0.00	5.99	0.00	2.112	5.55	0.00	13.3	86.4	0.3	-1.20	1.59	0.81	0.81	—	20228	5056	27	0	0	0	0	logfile
✔	7TKQ	25978	2025-06-17	2022-01-17	4.5	7.57	4.68	4.3	0.019	2.21	0.0	0.00	6.72	0.01	2.371	0.08	0.00	4.0	94.5	1.5	-0.48	0.59	0.61	—	4.3	0.004	0.78	0.0	0.00	5.35	0.00	2.390	2.23	0.00	8.6	91.1	0.3	-0.12	1.54	0.82	0.83	—	20228	5056	27	0	0	0	0	logfile
✔	7TKM	25974	2025-06-17	2022-01-17	4.5	7.58	5.79	4.3	0.019	2.22	0.0	0.00	6.78	0.01	2.385	0.12	0.00	4.3	94.2	1.5	-0.44	0.59	0.59	—	4.3	0.004	0.83	0.0	0.00	5.41	0.00	2.250	2.77	0.00	11.0	88.7	0.3	-0.54	1.51	0.83	0.82	—	20227	5056	27	0	0	0	0	logfile
✔	7TK0	25948	2025-06-17	2022-01-17	4.4	6.63	4.38	4.1	0.019	2.21	0.0	0.00	6.55	0.01	2.394	0.08	0.00	3.9	94.5	1.5	-0.40	0.58	0.62	—	4.1	0.005	0.90	0.0	0.00	5.37	0.00	2.352	2.27	0.00	10.1	89.7	0.3	0.07	1.58	0.83	0.81	—	20220	5054	27	0	0	0	0	logfile

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