Table showing results for June 2025

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7TKM	25974	2025-06-17	2022-01-17	4.5	7.58	5.79	4.3	0.019	2.22	0.0	0.00	6.78	0.01	2.385	0.12	0.00	4.3	94.2	1.5	-0.44	0.59	0.59	—	4.3	0.004	0.83	0.0	0.00	5.41	0.00	2.250	2.77	0.00	11.0	88.7	0.3	-0.54	1.51	0.83	0.82	—	20227	5056	27	0	0	0	0	logfile
✔	7TK0	25948	2025-06-17	2022-01-17	4.4	6.63	4.38	4.1	0.019	2.21	0.0	0.00	6.55	0.01	2.394	0.08	0.00	3.9	94.5	1.5	-0.40	0.58	0.62	—	4.1	0.005	0.90	0.0	0.00	5.37	0.00	2.352	2.27	0.00	10.1	89.7	0.3	0.07	1.58	0.83	0.81	—	20220	5054	27	0	0	0	0	logfile
✔	7TKP	25977	2025-06-17	2022-01-17	4.6	7.57	4.95	4.4	0.019	2.20	0.0	0.00	6.68	0.01	2.352	0.12	0.00	4.2	94.5	1.3	-0.50	0.60	0.63	—	4.4	0.003	0.70	0.0	0.00	4.38	0.00	2.475	0.96	0.00	6.5	93.3	0.2	1.36	0.75	0.79	0.81	—	20228	5056	27	0	0	0	0	logfile
✔	7TJY	25946	2025-06-17	2022-01-17	3.8	4.84	3.84	3.5	0.020	2.29	0.0	0.00	6.75	0.01	2.333	0.12	0.00	4.3	94.3	1.5	-0.54	0.59	0.68	—	3.6	0.005	0.84	0.0	0.00	5.09	0.00	2.462	1.04	0.00	8.9	90.8	0.3	0.44	1.48	0.82	0.86	—	20228	5056	27	0	0	0	0	logfile
✔	7TJJ	25927	2025-06-21	2022-01-16	2.7	3.01	2.72	2.9	0.006	0.94	0.0	0.06	17.52	0.01	2.003	3.99	0.47	2.9	97.1	0.0	-1.54	0.82	0.88	4.00	2.9	0.004	0.62	0.0	0.04	18.96	0.00	1.941	5.61	1.17	2.6	97.4	0.0	1.29	1.09	0.83	0.91	3.47	24732	2791	22	82	8	160	0	logfile
✔	7TJK	25928	2025-06-21	2022-01-16	2.7	3.10	2.76	2.9	0.005	0.89	0.0	0.05	17.38	0.01	1.886	3.81	0.39	2.9	97.1	0.0	-1.60	0.82	0.87	3.60	2.9	0.003	0.61	0.0	0.04	19.02	0.00	1.942	5.50	1.83	2.4	97.6	0.0	1.23	1.10	0.82	0.90	3.38	24668	2785	21	82	8	130	0	logfile
✔	7TJF	25924	2025-06-18	2022-01-16	2.6	3.06	2.57	2.8	0.005	0.87	0.0	0.05	19.81	0.01	1.795	4.00	1.87	2.1	97.9	0.0	-1.60	0.85	0.89	3.79	2.8	0.006	0.64	0.0	0.04	19.79	0.00	1.868	4.97	1.54	2.5	97.5	0.0	1.16	1.37	0.86	0.92	3.50	21125	2327	19	82	6	297	0	logfile
✔	7TJH	25925	2025-06-20	2022-01-16	2.5	3.01	2.55	2.7	0.005	0.91	0.0	0.05	19.97	0.01	2.076	3.51	2.06	3.0	97.0	0.0	-1.38	0.83	0.89	3.79	2.8	0.005	0.64	0.0	0.04	19.67	0.00	1.937	5.26	1.82	2.9	97.1	0.0	1.14	0.65	0.84	0.91	3.64	23899	2689	22	82	8	148	0	logfile
✔	7TJi	25926	2025-06-20	2022-01-16	2.7	3.10	2.66	2.9	0.005	0.90	0.0	0.05	20.30	0.01	1.974	4.53	2.52	3.0	97.0	0.0	-1.44	0.83	0.88	3.53	2.9	0.004	0.60	0.0	0.04	20.05	0.00	1.942	5.66	2.23	2.8	97.2	0.0	1.50	0.63	0.85	0.91	3.48	23766	2676	20	82	8	112	0	logfile
✔	7TJQ	25929	2025-06-24	2022-01-16	3.13	2.03	—	2.0	0.004	0.78	0.0	0.05	13.28	0.01	2.288	1.08	1.03	4.5	95.5	0.0	-0.55	0.75	0.75	3.94	2.0	0.005	0.65	0.0	0.05	15.27	0.00	2.524	6.34	2.45	2.6	97.4	0.0	-0.05	0.94	0.75	0.79	3.07	20538	2679	21	0	12	0	0	logfile
✔	7WMM	32615	2025-06-04	2022-01-15	2.6	2.33	—	2.7	0.008	0.86	0.0	0.05	12.79	0.00	2.361	6.18	0.00	6.8	93.2	0.0	-2.83	0.51	0.88	6.56	2.7	0.003	0.77	0.0	0.05	15.99	0.00	2.540	4.88	0.00	6.8	93.2	0.0	-2.11	0.47	0.52	0.89	5.80	2618	366	8	0	2	0	0	logfile
✔	7QTK	14143	2025-06-05	2022-01-14	3.84	4.13	—	4.0	0.004	0.74	1.0	0.05	13.16	0.00	2.182	9.44	0.54	4.9	95.0	0.2	-0.03	0.61	0.79	1.74	4.0	0.004	0.76	0.0	0.05	14.88	0.00	2.507	9.64	2.34	5.7	94.2	0.2	-0.61	0.57	0.62	0.80	1.73	5009	643	4	0	2	0	0	logfile
✔	7WLZ	32595	2025-06-21	2022-01-14	2.98	3.54	—	3.4	0.006	0.91	0.0	0.06	13.19	0.01	2.212	9.90	0.15	4.9	95.1	0.0	-2.29	0.80	0.81	2.68	3.4	0.008	0.80	0.0	0.05	14.62	0.00	2.442	7.32	1.72	4.6	95.4	0.0	-1.08	0.51	0.82	0.85	2.07	25061	3171	8	0	27	0	0	logfile
✔	7TJ9	25920	2025-06-10	2022-01-14	2.9	3.19	—	3.1	0.016	1.02	0.0	0.05	20.67	0.01	2.167	6.06	0.09	5.0	95.0	0.0	0.12	0.56	0.82	2.67	3.1	0.003	0.59	0.0	0.04	17.34	0.00	2.441	4.75	2.25	2.5	97.5	0.0	2.06	1.23	0.53	0.82	2.14	10975	1273	5	0	24	0	0	logfile
✔	7QTJ	14142	2025-06-09	2022-01-14	4.01	4.23	—	4.1	0.004	0.75	4.0	0.05	15.20	0.01	2.144	8.44	1.27	5.2	94.5	0.3	0.17	0.63	0.74	—	4.1	0.003	0.70	0.0	0.04	13.23	0.00	2.451	8.39	0.00	4.9	94.9	0.2	-0.66	0.49	0.63	0.75	—	9942	1280	8	0	5	0	0	logfile
✔	7WM0	32596	2025-06-04	2022-01-14	3.35	3.62	—	3.7	0.009	1.23	0.0	0.08	12.60	0.01	2.405	9.08	0.28	5.4	94.6	0.0	-2.87	0.69	0.56	0.97	3.6	0.004	0.87	0.0	0.05	16.12	0.00	2.566	11.35	3.86	5.7	94.3	0.0	-1.86	1.75	0.76	0.68	1.07	3376	432	4	0	1	0	0	logfile
✔	7TJ8	25919	2025-06-10	2022-01-14	3.2	3.59	—	3.5	0.015	1.06	2.0	0.06	17.59	0.01	2.042	6.51	0.80	6.0	93.4	0.7	-2.85	0.58	0.84	3.59	3.5	0.003	0.67	0.0	0.04	16.61	0.00	2.444	4.09	1.25	4.2	95.7	0.1	1.17	1.32	0.57	0.86	2.43	10551	1242	4	0	18	0	0	logfile
✔	7WLY	32594	2025-06-24	2022-01-14	3.4	3.69	—	3.5	0.007	0.87	0.0	0.06	13.27	0.01	2.207	9.99	0.97	7.1	92.9	0.0	-2.55	0.80	0.79	1.99	3.5	0.005	0.70	0.0	0.05	14.11	0.00	2.447	8.31	2.33	5.3	94.7	0.0	-1.09	0.56	0.81	0.83	1.88	28550	3627	12	0	31	0	0	logfile
✔	7WM1	32597	2025-06-13	2022-01-14	2.8	2.99	—	3.1	0.012	1.25	34.0	0.08	20.14	0.01	2.080	15.92	15.89	6.6	93.4	0.0	-4.36	0.65	0.80	2.43	3.1	0.004	0.67	0.0	0.04	18.58	0.00	2.390	7.03	5.44	4.3	95.6	0.1	-0.64	3.93	0.55	0.77	2.48	15197	1844	8	0	7	0	0	logfile
✔	7WM2	32598	2025-06-14	2022-01-14	2.69	2.86	—	3.0	0.012	1.03	12.0	0.07	18.17	0.01	2.110	18.30	12.04	5.9	94.0	0.2	-4.24	0.49	0.72	2.14	3.0	0.003	0.69	0.0	0.04	17.92	0.00	2.452	6.61	3.28	2.5	97.5	0.0	0.45	1.26	0.57	0.81	2.52	15485	1878	8	0	7	0	0	logfile

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