Table showing results for June 2025

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7TJ9	25920	2025-06-10	2022-01-14	2.9	3.19	—	3.1	0.016	1.02	0.0	0.05	20.67	0.01	2.167	6.06	0.09	5.0	95.0	0.0	0.12	0.56	0.82	2.67	3.1	0.003	0.59	0.0	0.04	17.34	0.00	2.441	4.75	2.25	2.5	97.5	0.0	2.06	1.23	0.53	0.82	2.14	10975	1273	5	0	24	0	0	logfile
✔	7WLY	32594	2025-06-24	2022-01-14	3.4	3.69	—	3.5	0.007	0.87	0.0	0.06	13.27	0.01	2.207	9.99	0.97	7.1	92.9	0.0	-2.55	0.80	0.79	1.99	3.5	0.005	0.70	0.0	0.05	14.11	0.00	2.447	8.31	2.33	5.3	94.7	0.0	-1.09	0.56	0.81	0.83	1.88	28550	3627	12	0	31	0	0	logfile
✔	7TiB	25616	2025-06-18	2022-01-13	3.4	3.28	3.63	3.3	0.002	0.53	0.0	0.04	16.86	0.00	2.099	8.51	1.09	2.2	97.8	0.0	-1.97	0.64	0.79	1.73	3.2	0.004	0.62	0.0	0.04	18.58	0.00	1.899	8.65	3.18	2.9	97.1	0.0	0.71	1.18	0.63	0.83	1.96	21377	2581	15	42	9	0	0	logfile
✔	7WLL	32587	2025-06-09	2022-01-13	3.6	3.89	—	3.8	0.012	1.19	2.0	0.08	16.94	0.00	2.026	13.97	0.50	7.3	92.6	0.1	-0.42	0.60	0.81	1.99	3.8	0.003	0.84	0.0	0.06	16.80	0.00	2.436	10.36	1.39	4.9	95.1	0.0	0.95	1.19	0.59	0.80	1.10	9540	1135	2	0	21	0	0	logfile
✔	7WLi	32584	2025-06-09	2022-01-13	3.3	3.59	—	3.6	0.012	1.01	1.0	0.06	15.40	0.01	1.888	15.00	0.20	7.3	92.5	0.2	-0.17	0.59	0.78	2.16	3.6	0.003	0.70	0.0	0.04	15.62	0.00	2.274	12.10	1.29	5.4	94.6	0.0	0.58	0.50	0.58	0.78	1.70	9493	1135	2	0	21	0	0	logfile
✔	7WLK	32586	2025-06-09	2022-01-13	3.6	3.50	—	3.6	0.010	0.99	0.0	0.06	15.42	0.00	1.853	14.07	0.10	6.7	93.3	0.0	0.27	0.72	0.79	1.77	3.6	0.003	0.69	0.0	0.04	15.75	0.00	2.343	9.22	2.09	4.5	95.5	0.0	1.11	1.18	0.72	0.79	1.16	9461	1135	2	0	17	0	0	logfile
✔	7WLR	32591	2025-06-10	2022-01-13	3.54	3.36	—	3.5	0.006	0.88	0.0	0.05	29.27	0.01	2.232	3.15	0.00	1.8	98.2	0.0	1.65	0.69	0.75	2.27	3.5	0.004	0.55	0.0	0.03	28.24	0.00	2.158	6.72	1.57	2.2	97.8	0.0	3.02	1.21	0.77	0.82	2.13	11922	754	10	290	0	0	0	logfile
✔	7WLC	32581	2025-06-04	2022-01-13	4.0	4.24	—	4.1	0.003	0.70	0.0	0.04	13.71	0.00	2.198	15.62	0.00	6.1	93.9	0.0	-1.35	0.71	0.77	—	4.2	0.003	0.79	0.0	0.05	16.26	0.00	2.515	13.92	3.34	6.4	93.6	0.0	-1.47	0.53	0.71	0.77	—	3307	430	3	0	0	0	0	logfile
✔	7WLT	32592	2025-06-29	2022-01-13	3.46	3.71	—	3.8	0.011	1.28	0.0	0.06	17.72	0.01	2.142	20.69	0.89	5.9	93.9	0.2	1.88	0.65	0.80	2.30	3.8	0.003	0.65	0.0	0.04	16.83	0.00	2.489	7.72	1.57	5.3	94.7	0.0	1.95	0.49	0.65	0.81	1.86	33912	4059	6	0	27	0	0	logfile
✔	7WLE	32583	2025-06-09	2022-01-13	3.62	3.17	—	3.3	0.003	0.50	0.0	0.04	9.91	0.00	2.240	9.09	5.25	6.1	93.9	0.0	-3.62	0.78	0.75	1.67	3.3	0.004	0.84	0.0	0.05	15.04	0.00	2.375	15.10	4.27	6.0	94.0	0.0	-0.96	1.43	0.80	0.78	1.44	10188	1324	2	0	0	0	0	logfile
✔	7TiK	25912	2025-06-04	2022-01-13	2.4	2.38	—	2.0	0.007	0.49	0.0	0.04	16.31	0.00	2.218	7.94	0.00	4.6	95.4	0.0	1.31	0.77	0.80	1.31	2.0	0.003	0.47	0.0	0.04	16.01	0.00	2.619	6.20	0.34	0.0	100.0	0.0	5.49	0.38	0.79	0.81	1.23	2565	339	6	0	0	0	0	logfile
✔	7WLJ	32585	2025-06-09	2022-01-13	3.9	4.18	—	4.1	0.009	1.01	0.0	0.14	16.92	0.00	1.912	18.90	0.10	6.7	93.3	0.0	0.03	0.59	0.80	1.62	4.1	0.003	0.89	0.0	0.05	15.65	0.00	2.332	14.74	1.69	5.2	94.8	0.0	-0.14	1.26	0.60	0.80	0.85	9450	1135	2	0	15	0	0	logfile
✔	7WL2	32574	2025-06-09	2022-01-12	3.25	2.44	—	2.9	0.002	0.49	0.0	0.04	8.51	0.00	2.207	6.40	2.14	4.9	95.0	0.1	-4.09	0.76	0.76	3.15	2.2	0.004	0.68	0.0	0.04	14.70	0.00	2.477	9.44	4.37	5.9	94.0	0.1	-0.05	1.21	0.80	0.81	2.37	10198	1330	2	0	0	0	0	logfile
✔	7QRU	14124	2025-06-14	2022-01-12	2.24	2.32	2.24	2.4	0.020	2.18	9.0	0.10	14.73	0.02	2.058	6.63	2.50	2.6	97.4	0.1	-1.62	0.79	0.91	4.88	2.4	0.004	0.60	0.0	0.04	15.66	0.00	2.525	5.24	1.55	1.0	99.0	0.0	2.41	1.14	0.79	0.90	4.01	16100	1957	18	0	3	360	0	logfile
✔	7WL7	32576	2025-06-09	2022-01-12	3.51	3.41	—	3.5	0.002	0.50	0.0	0.04	8.84	0.00	2.214	5.97	3.39	4.6	95.3	0.1	-3.63	0.79	0.77	2.09	3.5	0.004	0.85	0.0	0.05	13.92	0.00	2.409	14.39	3.74	6.3	93.7	0.0	-0.10	0.82	0.80	0.79	1.90	10198	1330	2	0	0	0	0	logfile
✔	7WL8	32577	2025-06-09	2022-01-12	3.4	3.22	—	3.4	0.002	0.49	0.0	0.04	9.00	0.00	2.251	6.35	1.87	4.6	95.3	0.1	-3.89	0.83	0.80	2.71	3.3	0.004	0.72	0.0	0.04	14.10	0.00	2.569	10.45	3.30	6.1	93.8	0.2	0.14	1.32	0.84	0.84	2.33	10198	1330	2	0	0	0	0	logfile
✔	7WL9	32578	2025-06-09	2022-01-12	3.78	3.44	—	3.5	0.002	0.49	0.0	0.04	9.09	0.00	2.201	6.64	4.27	4.6	95.3	0.1	-4.11	0.78	0.74	1.09	3.6	0.004	0.79	0.0	0.04	13.86	0.00	2.471	13.23	4.54	7.4	92.6	0.0	-0.49	0.80	0.78	0.77	1.45	10194	1327	3	0	1	0	0	logfile
✔	7WLB	32580	2025-06-09	2022-01-12	4.1	3.63	—	3.5	0.002	0.44	0.0	0.04	8.68	0.00	2.205	6.88	3.92	4.5	95.5	0.0	-4.05	0.74	0.72	—	3.5	0.004	0.74	0.0	0.05	11.01	0.00	2.440	15.16	0.00	6.5	93.5	0.0	-0.73	1.44	0.75	0.75	—	10193	1327	2	0	0	0	0	logfile
✔	7WLA	32579	2025-06-09	2022-01-12	3.76	3.09	3.71	3.2	0.002	0.44	0.0	0.04	8.82	0.00	2.197	6.98	4.01	5.1	94.9	0.0	-4.06	0.70	0.68	0.60	3.2	0.004	0.78	0.0	0.05	14.37	0.01	2.497	16.07	4.45	6.8	93.1	0.1	-1.11	1.36	0.72	0.71	0.91	10193	1327	2	0	0	0	0	logfile
✔	7THT	25904	2025-06-25	2022-01-12	3.42	3.67	—	3.6	0.014	1.91	27.0	0.11	13.97	0.02	1.285	8.40	3.00	6.7	92.8	0.6	-1.57	0.77	0.81	3.22	3.6	0.008	0.80	0.0	0.05	14.65	0.00	2.455	7.43	2.61	4.6	95.4	0.0	-1.00	1.24	0.80	0.86	2.67	28900	3651	25	0	60	0	0	logfile

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