Table showing results for June 2025

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7QRM	14123	2025-06-16	2022-01-11	2.7	2.81	—	2.9	0.013	0.91	0.0	0.05	20.05	0.01	2.033	14.02	1.88	4.6	95.4	0.0	-0.52	0.71	0.88	3.72	2.9	0.003	0.64	0.0	0.04	17.21	0.00	2.522	3.80	1.63	3.3	96.7	0.0	1.38	0.92	0.69	0.88	3.18	16336	1902	27	0	37	0	0	logfile
✔	7THK	25896	2025-06-20	2022-01-11	3.11	3.36	3.15	3.4	0.009	1.35	13.0	0.08	13.34	0.01	2.312	1.77	0.44	4.4	95.6	0.0	-1.63	0.71	0.78	2.87	3.4	0.003	0.61	0.0	0.04	14.67	0.00	2.409	6.32	2.20	2.8	97.2	0.0	0.21	1.00	0.73	0.87	3.10	23191	2925	6	0	38	0	0	logfile
✔	7THM	25898	2025-06-16	2022-01-11	3.18	3.44	—	3.4	0.002	0.50	0.0	0.04	13.36	0.00	1.713	3.23	0.00	5.9	94.1	0.0	-0.75	0.68	0.73	2.05	3.4	0.003	0.51	0.0	0.04	14.79	0.00	2.011	3.28	0.69	6.9	93.1	0.0	-0.49	0.45	0.68	0.75	2.30	18260	1150	6	0	4	0	9045	logfile
✔	7WKW	32570	2025-06-10	2022-01-11	2.62	2.71	—	2.8	0.004	0.57	0.0	0.04	13.10	0.00	1.991	5.89	0.00	1.9	98.1	0.0	1.70	0.47	0.63	1.09	2.7	0.003	0.59	0.0	0.04	15.61	0.01	2.453	4.06	1.41	2.1	97.9	0.0	1.49	0.62	0.60	0.82	2.17	12056	754	4	0	2	0	6138	logfile
✘	7THE	25893	2025-06-05	2022-01-10	3.87	4.06	3.94	4.0	0.013	1.88	0.0	0.11	13.76	0.02	2.548	0.15	0.00	8.2	91.8	0.0	-2.01	0.67	0.75	3.24	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	3305	423	4	0	1	0	0	logfile
✔	7TGX	25888	2025-06-22	2022-01-09	3.2	3.90	—	3.6	0.005	0.70	0.0	0.05	15.45	0.00	1.948	7.60	0.25	6.6	93.4	0.0	-2.14	0.85	0.86	3.04	3.6	0.006	0.68	0.0	0.05	14.71	0.00	2.484	4.54	1.27	5.5	94.5	0.0	-0.82	0.41	0.86	0.88	2.56	25778	3244	10	0	32	0	0	logfile
✔	7WKD	32565	2025-06-15	2022-01-09	3.01	2.29	—	3.1	0.007	0.41	1.0	0.04	7.82	0.00	1.978	6.84	0.31	1.4	98.6	0.0	-1.70	0.68	0.66	1.77	3.1	0.017	0.81	0.0	0.04	14.73	0.01	2.362	10.60	2.82	3.2	96.8	0.0	0.39	1.00	0.72	0.74	2.42	17530	1120	6	0	0	0	8727	logfile
✔	7TGY	25889	2025-06-22	2022-01-09	3.0	3.76	—	3.5	0.010	0.91	0.0	0.06	14.87	0.01	1.886	9.61	0.18	7.8	92.1	0.0	-2.50	0.86	0.87	3.21	3.5	0.005	0.70	0.0	0.05	13.92	0.00	2.476	3.59	1.06	4.7	95.3	0.0	-0.52	1.03	0.84	0.87	2.65	25999	3254	15	0	42	0	0	logfile
✔	7TGW	25887	2025-06-23	2022-01-09	3.0	3.69	—	3.4	0.008	0.93	0.0	0.10	15.75	0.01	1.983	10.37	0.24	7.3	92.6	0.0	-2.46	0.86	0.88	3.64	3.4	0.006	0.79	0.0	0.05	14.15	0.00	2.460	4.88	0.86	6.7	93.3	0.0	-1.07	0.49	0.86	0.89	3.13	26617	3307	18	0	45	0	0	logfile
✔	7QQK	14122	2025-06-12	2022-01-09	3.8	4.08	3.83	4.0	0.004	0.81	0.0	0.05	13.77	0.01	2.117	25.98	0.00	5.2	94.5	0.2	-0.09	0.65	0.78	1.88	4.0	0.004	0.78	0.0	0.05	16.07	0.01	2.521	21.05	2.95	5.9	94.0	0.1	-0.48	0.49	0.65	0.79	1.53	13444	1732	8	12	0	0	0	logfile
✔	7WK6	32560	2025-06-05	2022-01-08	3.67	2.86	—	3.8	0.008	1.07	1.0	0.07	15.40	0.01	2.328	5.81	0.57	4.7	94.9	0.4	-5.05	0.77	0.77	2.23	3.7	0.005	0.86	0.0	0.05	18.10	0.00	2.394	14.25	2.59	4.2	95.7	0.1	-1.21	1.76	0.78	0.78	1.89	6428	791	2	0	0	0	0	logfile
✔	7WK5	32559	2025-06-25	2022-01-08	3.66	3.93	—	3.7	0.005	0.84	1.0	0.05	13.40	0.01	1.646	3.40	0.27	3.9	96.0	0.1	-4.59	0.66	0.58	0.35	3.7	0.003	0.74	0.0	0.05	15.58	0.00	2.340	10.88	1.61	4.5	95.5	0.0	-1.61	1.03	0.69	0.65	0.58	29601	3750	4	0	0	0	0	logfile
✔	7WJY	32552	2025-06-25	2022-01-08	3.24	2.33	—	2.1	0.003	0.71	0.0	0.05	10.31	0.01	2.216	8.31	6.82	8.1	91.6	0.2	-4.98	0.69	0.71	2.44	2.1	0.004	0.73	0.0	0.05	13.88	0.01	2.318	8.66	5.42	9.7	90.3	0.0	-2.15	0.68	0.74	0.77	2.62	29429	3756	10	0	24	0	0	logfile
✔	7WK7	32561	2025-06-09	2022-01-08	3.49	2.78	—	3.0	0.002	0.44	0.0	0.04	8.68	0.00	2.206	5.49	3.12	4.5	95.4	0.1	-3.90	0.77	0.76	2.02	3.1	0.004	0.75	0.0	0.04	14.89	0.00	2.490	12.41	4.46	6.4	93.6	0.0	-0.46	1.27	0.79	0.80	1.91	10206	1330	4	0	2	0	0	logfile
✔	7WK3	32557	2025-06-21	2022-01-08	3.4	2.86	—	3.4	0.004	0.56	0.0	0.04	7.18	0.00	1.998	3.79	0.00	3.6	96.3	0.0	-2.17	0.65	0.57	1.77	3.3	0.003	0.69	0.0	0.04	14.28	0.00	2.467	7.33	1.99	2.8	97.2	0.0	-0.08	1.12	0.79	0.78	1.63	24805	3162	3	0	0	0	0	logfile
✔	7WKA	32564	2025-06-27	2022-01-08	3.64	3.27	—	3.6	0.005	0.79	1.0	0.05	8.14	0.01	2.353	3.18	0.23	3.7	96.1	0.1	-2.58	0.70	0.64	0.56	3.8	0.005	0.80	0.0	0.05	14.00	0.00	2.293	14.32	2.82	4.6	95.4	0.1	-0.72	1.61	0.77	0.74	1.35	31353	4017	7	0	0	0	0	logfile
✔	7WK8	32562	2025-06-04	2022-01-08	3.61	2.50	—	2.3	0.004	0.74	0.0	0.05	8.51	0.01	2.262	5.72	0.22	3.9	95.9	0.2	-1.34	0.77	0.76	3.80	2.3	0.002	0.61	0.0	0.04	12.99	0.00	2.594	6.99	1.55	2.6	97.2	0.2	0.41	1.23	0.79	0.78	4.34	3982	516	4	0	0	0	0	logfile
✔	7WK4	32558	2025-06-25	2022-01-08	3.69	3.97	—	3.8	0.005	0.86	2.0	0.06	14.66	0.01	2.338	3.94	0.49	3.4	96.4	0.2	-4.28	0.68	0.60	0.56	3.8	0.005	0.78	0.0	0.05	16.02	0.00	2.215	14.09	2.35	4.9	95.1	0.0	-1.13	0.77	0.71	0.68	0.87	29541	3743	4	0	0	0	0	logfile
✔	7WK1	32555	2025-06-09	2022-01-08	3.25	3.54	—	3.6	0.002	0.44	0.0	0.04	8.42	0.00	2.212	6.55	2.94	5.2	94.7	0.1	-4.01	0.65	0.76	1.98	3.5	0.003	0.62	0.0	0.04	13.44	0.00	2.446	9.63	2.76	5.7	94.2	0.1	0.13	0.77	0.70	0.84	1.68	10200	1330	4	0	2	0	0	logfile
✔	7WK2	32556	2025-06-21	2022-01-08	3.1	2.76	—	3.3	0.012	0.92	0.0	0.05	8.84	0.01	1.667	3.68	0.22	3.9	95.9	0.2	-3.00	0.72	0.68	1.17	3.3	0.004	0.75	0.0	0.05	14.67	0.00	2.432	8.10	2.41	2.8	97.2	0.0	-0.30	1.60	0.80	0.79	2.10	24879	3171	3	0	0	0	0	logfile

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