Table showing results for June 2025

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7WK1	32555	2025-06-09	2022-01-08	3.25	3.54	—	3.6	0.002	0.44	0.0	0.04	8.42	0.00	2.212	6.55	2.94	5.2	94.7	0.1	-4.01	0.65	0.76	1.98	3.5	0.003	0.62	0.0	0.04	13.44	0.00	2.446	9.63	2.76	5.7	94.2	0.1	0.13	0.77	0.70	0.84	1.68	10200	1330	4	0	2	0	0	logfile
✔	7WJo	32547	2025-06-11	2022-01-07	3.2	3.40	—	3.3	0.006	0.55	0.0	0.04	11.70	0.00	2.203	4.21	0.29	4.4	95.6	0.0	1.94	0.67	0.82	2.26	3.4	0.004	0.58	0.0	0.04	14.62	0.00	2.526	4.41	2.76	5.5	94.5	0.0	1.43	0.52	0.68	0.85	1.60	12932	1602	4	0	2	0	0	logfile
✔	7TGE	25880	2025-06-18	2022-01-07	3.68	4.05	3.73	3.7	0.004	0.82	0.0	0.06	13.34	0.01	2.270	3.50	0.09	3.8	96.2	0.0	-1.30	0.80	0.72	0.89	3.7	0.003	0.62	0.0	0.04	14.44	0.00	2.429	7.48	0.81	3.8	96.2	0.0	-0.37	1.58	0.82	0.74	0.62	21461	2677	15	0	40	0	0	logfile
✔	7WJU	32548	2025-06-07	2022-01-07	2.69	2.82	—	2.8	0.007	0.99	0.0	0.07	21.91	0.01	2.325	3.53	0.00	5.3	94.5	0.2	-2.47	0.72	0.81	3.88	2.8	0.005	0.64	0.0	0.04	22.31	0.00	2.251	5.06	2.63	4.3	95.7	0.0	0.51	0.42	0.70	0.83	3.53	8322	607	5	158	0	0	0	logfile
✔	7WJM	32545	2025-06-11	2022-01-07	3.3	3.53	—	3.5	0.003	0.48	0.0	0.04	10.78	0.00	2.265	3.14	0.29	5.0	95.0	0.0	1.87	0.70	0.85	2.41	3.5	0.003	0.54	0.0	0.04	14.11	0.00	2.370	3.69	2.73	4.4	95.6	0.0	2.18	3.22	0.71	0.87	1.87	12970	1614	2	0	0	0	0	logfile
✔	7WJN	32546	2025-06-11	2022-01-07	3.3	3.46	—	3.4	0.004	0.59	0.0	0.04	10.44	0.00	2.235	2.90	0.58	4.1	95.9	0.0	2.06	0.67	0.82	2.37	3.4	0.003	0.53	0.0	0.04	14.21	0.00	2.507	4.40	2.45	5.3	94.7	0.0	2.02	1.16	0.68	0.85	1.84	13054	1616	4	0	4	0	0	logfile
✔	7TGG	25881	2025-06-15	2022-01-07	4.1	4.67	—	4.4	0.004	0.71	0.0	0.05	11.74	0.01	2.070	15.91	0.00	7.4	92.6	0.0	-2.21	0.66	0.82	—	4.3	0.003	0.67	0.0	0.04	10.96	0.00	2.465	6.30	0.00	9.6	90.4	0.0	-0.66	0.67	0.67	0.86	—	18255	2445	30	0	0	0	0	logfile
✔	7TFS	25879	2025-06-10	2022-01-07	4.3	4.40	—	4.4	0.017	0.96	0.0	0.04	16.80	0.01	2.001	35.40	0.00	6.0	94.0	0.0	-2.06	0.63	0.70	—	4.4	0.009	1.01	0.0	0.04	15.87	0.01	2.060	10.95	0.00	9.6	90.4	0.0	-2.41	0.61	0.63	0.73	—	11382	1414	14	0	28	0	0	logfile
✔	7TEX	25854	2025-06-23	2022-01-06	3.27	4.06	—	3.3	0.005	0.83	0.0	0.06	13.17	0.01	2.280	2.91	0.17	1.4	98.6	0.0	0.73	0.84	0.83	2.15	3.3	0.007	0.76	0.0	0.05	14.39	0.00	2.321	10.62	0.90	3.6	96.4	0.0	0.36	0.66	0.85	0.87	2.45	26839	3303	26	0	62	0	0	logfile
✔	7TFN	25877	2025-06-27	2022-01-06	4.0	4.13	—	4.0	0.004	0.77	0.0	0.06	18.09	0.01	1.966	14.51	0.10	5.9	93.9	0.2	-0.97	0.78	0.79	—	4.0	0.003	0.74	0.0	0.05	15.66	0.00	2.403	10.34	1.82	5.9	94.0	0.1	-0.86	0.40	0.79	0.82	—	18692	2344	31	0	58	0	0	logfile
✔	7TEW	25853	2025-06-05	2022-01-06	3.52	4.17	—	3.8	0.005	0.88	0.0	0.06	13.34	0.01	2.344	2.89	0.14	1.4	98.6	0.0	0.00	0.82	0.82	2.55	3.8	0.005	0.64	0.0	0.04	15.54	0.00	2.527	8.67	1.71	2.5	97.5	0.0	1.61	1.57	0.83	0.85	2.30	6555	797	4	0	7	0	0	logfile
✔	7TFo	25878	2025-06-23	2022-01-06	4.1	3.83	—	3.8	0.007	0.83	0.0	0.05	14.99	0.01	2.118	16.68	0.21	8.9	91.1	0.0	-1.50	0.74	0.73	—	3.7	0.003	0.71	0.0	0.05	13.55	0.00	2.411	10.38	0.00	5.8	94.1	0.0	-1.31	0.70	0.74	0.76	—	17774	2283	20	0	21	0	0	logfile
✔	7TF3	25860	2025-06-19	2022-01-06	2.25	2.94	—	2.8	0.005	0.86	0.0	0.06	12.94	0.01	2.287	3.03	0.00	2.0	98.0	0.0	0.09	0.79	0.83	3.63	2.7	0.005	0.63	0.0	0.05	14.38	0.00	2.461	5.28	1.44	2.2	97.8	0.0	0.65	1.85	0.79	0.85	3.64	21873	2703	24	0	56	0	0	logfile
✔	7TF0	25857	2025-06-23	2022-01-06	3.02	3.77	—	3.2	0.005	0.84	0.0	0.06	13.05	0.01	2.269	3.14	0.10	1.4	98.5	0.0	0.64	0.81	0.82	2.21	3.2	0.004	0.61	0.0	0.04	14.47	0.00	2.357	6.88	1.03	1.9	98.1	0.0	0.85	0.69	0.81	0.83	2.15	26849	3303	26	0	62	0	0	logfile
✔	7TFL	25876	2025-06-12	2022-01-06	3.33	3.61	—	3.5	0.003	0.62	0.0	0.04	15.10	0.00	2.089	9.78	0.14	3.5	96.5	0.0	0.58	0.70	0.59	0.62	3.5	0.005	0.76	0.0	0.05	17.13	0.00	1.803	16.93	2.33	3.8	96.2	0.0	0.03	0.56	0.73	0.67	0.86	13690	1653	12	24	9	0	0	logfile
✔	7TF1	25858	2025-06-11	2022-01-06	3.57	4.05	—	3.9	0.004	0.78	0.0	0.06	12.71	0.01	2.300	2.67	0.36	2.5	97.5	0.0	-1.40	0.60	0.81	2.33	3.9	0.005	0.70	0.0	0.05	14.31	0.00	2.396	9.37	2.16	3.7	96.3	0.0	-0.66	0.74	0.61	0.83	1.68	12786	1608	12	0	12	0	0	logfile
✔	7TFJ	25874	2025-06-18	2022-01-06	3.3	3.54	—	3.5	0.003	0.63	0.0	0.04	15.19	0.00	2.088	7.61	0.09	2.8	97.2	0.0	0.19	0.76	0.81	2.14	3.5	0.003	0.59	0.0	0.04	16.88	0.00	2.001	9.05	1.90	3.2	96.8	0.0	0.87	0.43	0.76	0.83	1.78	20607	2486	15	42	9	0	0	logfile
✔	7TEY	25855	2025-06-19	2022-01-06	2.25	2.88	—	2.7	0.005	0.85	0.0	0.06	12.95	0.01	2.293	3.31	0.00	2.0	98.0	0.0	0.06	0.77	0.83	3.44	2.7	0.003	0.59	0.0	0.05	14.18	0.00	2.540	5.18	1.18	1.8	98.2	0.0	0.70	1.15	0.76	0.84	3.52	21867	2703	24	0	56	0	0	logfile
✔	7TF4	25861	2025-06-11	2022-01-06	3.01	3.49	—	3.3	0.005	0.87	0.0	0.05	12.76	0.01	2.278	3.59	0.00	2.8	97.2	0.0	-1.60	0.63	0.82	3.29	3.3	0.003	0.56	0.0	0.05	13.71	0.00	2.368	5.42	1.15	2.8	97.2	0.0	-0.61	0.41	0.64	0.84	2.97	12792	1608	12	0	12	0	0	logfile
✔	7TFH	25872	2025-06-20	2022-01-06	3.09	2.46	—	3.2	0.003	0.57	0.0	0.04	16.18	0.00	2.066	7.61	0.04	2.9	97.1	0.0	0.09	0.82	0.79	2.41	3.2	0.003	0.56	0.0	0.04	17.47	0.00	1.997	8.01	1.67	3.0	97.0	0.0	0.78	1.69	0.83	0.84	2.11	22831	2717	17	63	9	0	0	logfile

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