Table showing results for June 2025

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7TFo	25878	2025-06-23	2022-01-06	4.1	3.83	—	3.8	0.007	0.83	0.0	0.05	14.99	0.01	2.118	16.68	0.21	8.9	91.1	0.0	-1.50	0.74	0.73	—	3.7	0.003	0.71	0.0	0.05	13.55	0.00	2.411	10.38	0.00	5.8	94.1	0.0	-1.31	0.70	0.74	0.76	—	17774	2283	20	0	21	0	0	logfile
✔	7TFL	25876	2025-06-12	2022-01-06	3.33	3.61	—	3.5	0.003	0.62	0.0	0.04	15.10	0.00	2.089	9.78	0.14	3.5	96.5	0.0	0.58	0.70	0.59	0.62	3.5	0.005	0.76	0.0	0.05	17.13	0.00	1.803	16.93	2.33	3.8	96.2	0.0	0.03	0.56	0.73	0.67	0.86	13690	1653	12	24	9	0	0	logfile
✔	7TFK	25875	2025-06-13	2022-01-06	3.25	3.36	—	3.3	0.003	0.65	0.0	0.04	16.01	0.01	2.092	10.12	0.13	3.2	96.8	0.0	0.18	0.69	0.63	1.06	3.3	0.003	0.65	0.0	0.04	17.31	0.00	1.891	13.87	1.89	3.8	96.2	0.0	0.45	0.45	0.71	0.68	1.11	14363	1680	14	45	9	0	0	logfile
✔	7TFJ	25874	2025-06-18	2022-01-06	3.3	3.54	—	3.5	0.003	0.63	0.0	0.04	15.19	0.00	2.088	7.61	0.09	2.8	97.2	0.0	0.19	0.76	0.81	2.14	3.5	0.003	0.59	0.0	0.04	16.88	0.00	2.001	9.05	1.90	3.2	96.8	0.0	0.87	0.43	0.76	0.83	1.78	20607	2486	15	42	9	0	0	logfile
✔	7WiW	32538	2025-06-07	2022-01-05	3.12	3.47	—	3.3	0.006	0.99	1.0	0.05	14.75	0.01	1.891	8.72	1.03	7.1	92.3	0.6	-4.54	0.72	0.89	3.28	3.3	0.003	0.66	0.0	0.04	15.85	0.00	1.934	5.45	2.29	6.0	93.7	0.3	-0.95	0.92	0.68	0.89	2.56	8603	1137	4	0	5	0	0	logfile
✔	7WiU	32536	2025-06-07	2022-01-05	3.48	3.87	—	3.7	0.004	0.94	5.0	0.05	14.54	0.00	2.070	12.01	2.16	11.7	87.4	0.9	-3.47	0.68	0.86	2.13	3.7	0.003	0.77	0.0	0.04	15.77	0.00	2.494	7.21	2.84	9.4	90.4	0.3	-0.23	0.97	0.69	0.86	1.77	8615	1147	2	0	0	0	0	logfile
✔	7WiV	32537	2025-06-07	2022-01-05	2.88	3.16	—	3.0	0.008	1.02	4.0	0.06	14.50	0.01	2.209	8.44	0.68	9.4	90.2	0.4	-5.21	0.69	0.88	3.24	3.0	0.003	0.75	0.0	0.04	14.81	0.00	2.355	5.19	1.82	7.2	92.7	0.1	-0.13	0.95	0.71	0.89	2.24	8646	1147	3	0	1	0	0	logfile
✔	7TEi	25846	2025-06-22	2022-01-05	3.4	3.66	3.39	3.5	0.006	0.93	0.0	0.06	17.70	0.01	2.268	2.65	0.00	3.5	96.5	0.0	-0.99	0.84	0.84	2.83	3.5	0.003	0.63	0.0	0.05	13.58	0.00	2.457	3.69	0.52	2.6	97.4	0.0	0.45	1.12	0.86	0.88	2.52	25420	3044	39	0	116	0	0	logfile
✘	7TES	25851	2025-06-27	2022-01-05	4.7	8.44	4.80	4.3	0.004	0.92	0.0	0.05	14.89	0.01	2.261	9.08	1.27	8.9	90.9	0.3	-4.01	0.82	0.77	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	31306	3986	8	0	0	0	0	logfile
✔	7WiX	32539	2025-06-07	2022-01-05	3.53	3.90	—	3.7	0.005	0.93	1.0	0.04	14.86	0.01	2.063	10.48	0.57	10.1	89.5	0.3	-2.81	0.70	0.87	1.91	3.7	0.003	0.74	0.0	0.04	16.10	0.00	2.358	7.35	3.41	8.0	91.9	0.1	0.49	0.97	0.70	0.86	1.55	8670	1147	4	0	3	0	0	logfile
✔	7WJ5	32543	2025-06-07	2022-01-05	3.72	3.15	—	3.2	0.004	0.55	0.0	0.04	10.79	0.00	2.173	7.85	3.05	4.1	95.9	0.0	1.05	0.62	0.80	2.62	3.2	0.003	0.61	0.0	0.04	14.54	0.00	2.539	7.67	3.05	3.5	96.5	0.0	0.68	0.40	0.63	0.80	2.12	8660	1129	6	0	0	0	0	logfile
✔	7TET	25852	2025-06-24	2022-01-05	4.45	6.94	4.55	4.4	0.005	1.03	0.0	0.06	14.45	0.01	2.224	9.44	0.78	10.6	88.9	0.5	-4.42	0.84	0.83	—	4.3	0.003	0.69	0.0	0.04	13.50	0.00	2.467	15.27	0.00	9.8	90.1	0.2	-1.86	0.62	0.83	0.84	—	28088	3563	8	0	0	0	0	logfile
✔	7TEB	25844	2025-06-24	2022-01-04	4.23	5.48	4.24	3.5	0.008	1.48	6.0	0.07	16.52	0.01	1.373	15.69	3.86	11.6	86.6	1.7	-4.64	0.78	0.68	—	3.3	0.004	0.81	0.0	0.05	13.90	0.00	2.454	16.87	0.06	10.8	89.0	0.2	-1.44	1.56	0.83	0.81	—	28161	3580	8	0	0	0	0	logfile
✔	7TE9	25843	2025-06-24	2022-01-04	3.92	4.91	3.94	3.8	0.006	1.06	0.0	0.06	15.48	0.01	0.928	8.68	1.21	9.8	89.6	0.6	-4.42	0.81	0.75	0.65	3.8	0.005	0.87	0.0	0.05	16.09	0.01	2.458	16.98	1.77	11.6	88.0	0.4	-1.87	0.66	0.84	0.84	0.70	28142	3601	8	0	0	0	0	logfile
✔	7WiT	32535	2025-06-07	2022-01-04	3.21	3.87	3.47	3.8	0.005	0.57	0.0	0.04	11.49	0.00	2.271	4.78	3.11	3.3	96.7	0.0	-0.91	0.61	0.77	2.46	3.8	0.003	0.55	0.0	0.04	13.57	0.00	2.594	5.48	2.17	2.3	97.7	0.0	2.22	0.61	0.62	0.79	1.29	8109	1133	2	0	2	0	0	logfile
✔	7QPA	14116	2025-06-10	2022-01-03	3.18	3.43	3.17	3.5	0.004	0.64	0.0	0.04	15.17	0.01	2.208	8.98	0.00	2.2	97.8	0.0	1.43	0.55	0.74	1.92	3.4	0.003	0.53	0.0	0.04	15.74	0.01	2.415	8.98	1.08	3.1	96.9	0.0	1.18	0.42	0.51	0.74	1.35	10814	654	6	0	4	64	5540	logfile
✔	7WiC	32528	2025-06-07	2022-01-03	2.8	2.21	—	1.9	0.005	0.62	0.0	0.05	12.93	0.00	2.176	7.87	0.00	2.7	97.3	0.0	0.61	0.76	0.76	3.53	1.9	0.003	0.58	0.0	0.04	15.50	0.00	2.564	5.60	2.52	3.0	97.0	0.0	1.19	0.35	0.78	0.80	3.22	9048	1158	6	0	0	0	0	logfile
✔	7QPD	14119	2025-06-10	2022-01-03	3.73	3.98	—	3.9	0.005	0.81	0.0	0.05	12.54	0.00	2.225	9.51	0.09	4.9	95.0	0.1	-1.20	0.80	0.76	2.23	3.9	0.003	0.70	0.0	0.05	14.27	0.00	2.530	10.29	2.26	4.3	95.6	0.1	-0.53	2.23	0.81	0.77	1.95	11521	1544	7	0	10	0	0	logfile
✔	7WiG	32529	2025-06-07	2022-01-03	2.7	2.14	—	1.8	0.006	0.75	0.0	0.05	13.30	0.00	2.192	6.75	0.00	2.0	98.0	0.0	1.11	0.78	0.77	3.19	1.8	0.003	0.57	0.0	0.04	15.29	0.00	2.535	4.84	1.43	2.1	97.9	0.0	1.62	0.35	0.79	0.80	2.92	8931	1139	6	0	1	0	0	logfile
✔	7QPC	14117	2025-06-10	2022-01-03	3.44	3.64	3.38	3.7	0.004	0.62	0.0	0.04	15.00	0.00	2.199	5.74	0.00	2.5	97.5	0.0	1.61	0.59	0.79	1.03	3.7	0.003	0.56	0.0	0.04	15.72	0.00	2.448	6.58	0.54	3.4	96.6	0.0	1.41	0.30	0.58	0.80	1.29	10830	654	6	0	4	62	5540	logfile

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