Table showing results for June 2025

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7WiG	32529	2025-06-07	2022-01-03	2.7	2.14	—	1.8	0.006	0.75	0.0	0.05	13.30	0.00	2.192	6.75	0.00	2.0	98.0	0.0	1.11	0.78	0.77	3.19	1.8	0.003	0.57	0.0	0.04	15.29	0.00	2.535	4.84	1.43	2.1	97.9	0.0	1.62	0.35	0.79	0.80	2.92	8931	1139	6	0	1	0	0	logfile
✔	7QPC	14117	2025-06-10	2022-01-03	3.44	3.64	3.38	3.7	0.004	0.62	0.0	0.04	15.00	0.00	2.199	5.74	0.00	2.5	97.5	0.0	1.61	0.59	0.79	1.03	3.7	0.003	0.56	0.0	0.04	15.72	0.00	2.448	6.58	0.54	3.4	96.6	0.0	1.41	0.30	0.58	0.80	1.29	10830	654	6	0	4	62	5540	logfile
✔	7QPD	14119	2025-06-10	2022-01-03	3.73	3.98	—	3.9	0.005	0.81	0.0	0.05	12.54	0.00	2.225	9.51	0.09	4.9	95.0	0.1	-1.20	0.80	0.76	2.23	3.9	0.003	0.70	0.0	0.05	14.27	0.00	2.530	10.29	2.26	4.3	95.6	0.1	-0.53	2.23	0.81	0.77	1.95	11521	1544	7	0	10	0	0	logfile
✔	7QP9	14115	2025-06-10	2022-01-03	2.89	3.12	2.87	3.2	0.004	0.63	0.0	0.04	15.53	0.00	2.249	6.44	0.00	3.6	96.4	0.0	2.00	0.58	0.81	3.64	3.2	0.002	0.50	0.0	0.04	16.48	0.00	2.433	10.25	0.90	2.9	97.1	0.0	2.05	0.73	0.53	0.82	3.57	11087	654	6	0	4	127	5668	logfile
✔	7QPA	14116	2025-06-10	2022-01-03	3.18	3.43	3.17	3.5	0.004	0.64	0.0	0.04	15.17	0.01	2.208	8.98	0.00	2.2	97.8	0.0	1.43	0.55	0.74	1.92	3.4	0.003	0.53	0.0	0.04	15.74	0.01	2.415	8.98	1.08	3.1	96.9	0.0	1.18	0.42	0.51	0.74	1.35	10814	654	6	0	4	64	5540	logfile
✔	7WiJ	32531	2025-06-11	2022-01-03	3.17	3.08	3.01	3.2	0.002	0.50	0.0	0.03	14.49	0.00	2.243	4.52	0.00	0.4	99.6	0.0	2.75	0.70	0.85	1.82	3.2	0.003	0.54	0.0	0.04	15.67	0.00	2.608	3.00	1.81	0.6	99.4	0.0	3.19	0.27	0.71	0.87	1.63	12396	1602	6	0	0	0	0	logfile
✔	7Wi4	32521	2025-06-16	2022-01-02	3.4	2.58	—	2.1	0.016	1.09	0.0	0.06	18.32	0.01	1.813	16.25	18.40	8.3	91.5	0.2	-2.33	0.77	0.76	1.51	2.1	0.004	0.83	1.0	0.04	17.63	0.00	1.953	9.54	6.43	4.6	95.4	0.0	0.09	1.53	0.77	0.77	1.12	19284	2460	12	0	18	0	0	logfile
✔	7TDo	25837	2025-06-16	2022-01-02	3.15	4.00	—	3.7	0.004	0.57	0.0	0.04	14.51	0.00	2.284	4.72	0.00	4.1	95.9	0.0	-1.16	0.73	0.68	1.65	3.7	0.004	0.61	0.0	0.04	14.85	0.00	2.482	3.63	0.49	4.3	95.7	0.0	1.06	0.58	0.85	0.84	1.87	19572	2520	12	0	6	0	0	logfile
✔	7Wi0	32517	2025-06-05	2022-01-01	3.82	4.11	—	4.1	0.008	1.05	0.0	0.06	14.37	0.01	2.265	6.66	0.40	8.6	91.3	0.1	-4.32	0.72	0.81	2.23	4.1	0.004	0.75	0.0	0.04	16.29	0.00	2.372	9.05	3.23	8.5	91.5	0.0	-2.39	1.84	0.70	0.81	1.95	6823	886	8	0	1	0	0	logfile
✘	7WHZ	32516	2025-06-05	2022-01-01	3.42	3.64	—	3.7	0.007	0.94	0.0	0.06	14.21	0.01	2.276	5.93	0.40	8.4	91.6	0.0	-4.20	0.67	0.81	2.33	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	6810	887	8	0	1	0	0	logfile
✔	7WHP	32507	2025-06-15	2021-12-31	3.7	3.28	—	3.3	0.004	0.62	0.0	0.04	15.13	0.01	2.209	8.40	0.00	2.9	97.0	0.0	-0.85	0.30	0.77	2.67	3.3	0.005	0.89	1.0	0.05	16.48	0.01	2.224	9.72	2.34	4.3	95.6	0.1	-0.62	1.55	0.30	0.78	2.52	17038	2114	4	0	6	0	0	logfile
✔	7WHS	32510	2025-06-15	2021-12-31	3.1	3.49	—	3.5	0.005	0.78	1.0	0.06	16.31	0.01	2.197	8.40	0.33	8.2	91.8	0.0	-1.09	0.68	0.79	3.09	3.5	0.003	0.62	0.0	0.05	17.39	0.00	2.041	8.20	2.39	6.3	93.7	0.0	-1.75	1.13	0.69	0.82	3.00	17232	2196	12	0	12	0	0	logfile
✔	7TDF	25827	2025-06-22	2021-12-31	2.7	2.10	2.66	1.9	0.006	0.74	0.0	0.05	12.56	0.01	2.148	2.71	0.19	3.5	96.5	0.0	0.06	0.74	0.77	4.39	1.9	0.005	0.61	0.0	0.04	15.43	0.00	2.378	4.40	1.51	2.9	97.1	0.0	2.17	1.13	0.76	0.81	3.65	19566	1188	2	0	0	0	9792	logfile
✔	7WHV	32512	2025-06-11	2021-12-31	2.8	2.22	—	2.7	0.016	1.30	0.0	0.08	12.09	0.01	2.100	7.72	0.60	7.0	92.9	0.1	-3.98	0.65	0.78	4.48	2.7	0.004	0.71	0.0	0.05	15.14	0.00	2.044	11.05	3.25	5.4	94.6	0.0	-0.72	0.62	0.66	0.80	3.56	12331	1520	4	0	7	0	0	logfile
✔	7WHN	32505	2025-06-08	2021-12-31	3.3	2.99	—	3.2	0.009	0.80	0.0	0.05	13.81	0.01	2.147	7.64	0.10	4.5	95.5	0.0	-1.29	0.41	0.83	2.92	3.2	0.002	0.50	0.0	0.04	15.32	0.00	2.519	5.26	1.06	2.1	97.9	0.0	0.71	0.33	0.37	0.82	2.30	9284	1170	1	0	0	0	0	logfile
✔	7TDE	25826	2025-06-15	2021-12-31	3.2	2.37	3.26	2.2	0.006	0.68	0.0	0.04	12.53	0.01	2.312	1.69	0.52	1.8	98.2	0.0	0.04	0.68	0.74	3.07	2.2	0.005	0.54	0.0	0.04	15.18	0.00	2.404	4.34	0.73	2.0	98.0	0.0	2.21	1.83	0.69	0.75	2.73	17734	1075	2	0	0	0	8888	logfile
✔	7WHR	32509	2025-06-15	2021-12-31	3.4	4.06	—	4.0	0.003	0.60	0.0	0.05	13.11	0.00	2.190	10.13	0.00	7.4	92.6	0.0	-2.33	0.66	0.74	2.21	4.0	0.003	0.66	0.0	0.05	15.00	0.00	2.497	8.71	1.91	6.4	93.6	0.0	-2.06	0.35	0.62	0.70	1.77	16914	2184	6	0	0	0	0	logfile
✔	7WHW	32513	2025-06-11	2021-12-31	3.1	2.64	—	3.0	0.009	1.18	0.0	0.07	12.72	0.01	2.107	7.84	0.54	8.4	91.6	0.1	-5.16	0.62	0.76	3.64	3.0	0.004	0.69	0.0	0.04	15.01	0.00	1.991	10.78	2.32	7.1	92.9	0.0	-1.90	0.64	0.64	0.80	2.97	11978	1488	4	0	5	0	0	logfile
✔	7WHT	32511	2025-06-15	2021-12-31	3.5	3.75	—	3.7	0.006	0.90	2.0	0.06	18.72	0.01	1.473	13.07	1.38	9.5	90.5	0.0	-1.32	0.67	0.75	2.76	3.7	0.003	0.68	0.0	0.05	15.56	0.01	1.937	10.52	1.82	10.2	89.8	0.0	-1.49	0.48	0.77	0.80	2.15	16980	2160	12	0	12	0	0	logfile
✔	7WH8	32497	2025-06-05	2021-12-30	3.11	3.31	—	3.2	0.004	0.71	1.0	0.05	14.34	0.01	2.233	11.28	2.61	8.6	91.0	0.4	-2.16	0.70	0.79	3.20	3.3	0.005	0.76	0.0	0.05	15.73	0.00	2.582	5.36	2.78	8.3	91.7	0.0	-1.46	1.18	0.70	0.82	3.64	5479	715	3	0	0	0	0	logfile

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