Table showing results for June 2025

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7WHB	32498	2025-06-29	2021-12-30	2.67	3.79	—	3.4	0.003	0.62	0.0	0.05	13.91	0.00	2.193	6.93	0.27	6.8	93.2	0.0	-0.98	0.86	0.82	2.39	3.4	0.003	0.67	0.0	0.05	14.99	0.00	2.416	5.79	1.44	6.1	93.9	0.0	-0.55	0.38	0.84	0.81	1.97	34209	4331	30	0	54	0	0	logfile
✔	7WHi	32500	2025-06-24	2021-12-30	2.93	2.59	—	3.1	0.004	0.66	0.0	0.05	10.72	0.02	2.213	7.54	5.48	5.5	94.3	0.2	-3.55	0.77	0.75	2.17	3.0	0.003	0.75	0.0	0.05	14.26	0.00	2.387	7.92	3.63	5.7	94.2	0.0	-1.24	1.26	0.80	0.82	2.28	28350	3578	10	0	36	0	0	logfile
✔	7TD6	25824	2025-06-05	2021-12-30	3.0	3.41	3.07	3.4	0.002	0.57	0.0	0.05	16.47	0.00	2.449	7.94	0.00	0.0	100.0	0.0	-3.11	0.42	0.76	2.95	3.4	0.004	0.82	0.0	0.05	18.55	0.00	2.422	10.80	1.85	7.1	92.9	0.0	-3.87	1.73	0.42	0.76	3.69	5575	690	5	0	0	0	0	logfile
✔	7WHJ	32501	2025-06-24	2021-12-30	3.27	2.36	—	2.1	0.003	0.49	0.0	0.04	10.21	0.01	2.217	6.84	1.96	4.4	95.5	0.1	-3.44	0.74	0.73	2.56	2.1	0.004	0.77	0.0	0.05	13.55	0.00	2.164	8.85	3.35	7.2	92.8	0.0	-1.63	1.24	0.77	0.79	2.46	27788	3499	9	0	40	0	0	logfile
✔	7TDD	25825	2025-06-17	2021-12-30	3.5	2.37	2.71	2.8	0.029	2.07	183.0	0.29	12.65	0.01	2.192	1.90	0.55	1.5	98.4	0.1	-0.52	0.67	0.64	2.40	2.7	0.005	0.60	0.0	0.04	15.47	0.00	2.208	5.94	1.20	2.3	97.6	0.1	2.30	3.04	0.67	0.68	2.52	20031	1211	2	0	0	0	10025	logfile
✔	7WHK	32503	2025-06-25	2021-12-30	3.01	2.59	—	3.1	0.004	0.72	1.0	0.05	11.43	0.01	2.208	7.01	6.30	5.6	94.1	0.3	-3.45	0.78	0.76	2.28	3.0	0.004	0.72	0.0	0.05	13.86	0.00	2.398	8.10	3.46	6.4	93.6	0.0	-1.28	0.66	0.79	0.81	2.65	29150	3697	11	0	28	0	0	logfile
✔	7WH8	32497	2025-06-05	2021-12-30	3.11	3.31	—	3.2	0.004	0.71	1.0	0.05	14.34	0.01	2.233	11.28	2.61	8.6	91.0	0.4	-2.16	0.70	0.79	3.20	3.3	0.005	0.76	0.0	0.05	15.73	0.00	2.582	5.36	2.78	8.3	91.7	0.0	-1.46	1.18	0.70	0.82	3.64	5479	715	3	0	0	0	0	logfile
✔	7WGY	32492	2025-06-19	2021-12-29	4.0	4.56	—	4.2	0.008	0.78	0.0	0.05	15.64	0.01	2.104	7.65	0.00	5.5	94.2	0.3	-0.80	0.80	0.77	—	4.2	0.004	0.60	0.0	0.04	14.56	0.00	2.483	7.08	1.03	4.6	95.2	0.3	0.16	0.44	0.84	0.84	—	22914	2879	14	0	31	0	0	logfile
✔	7WGX	32491	2025-06-22	2021-12-29	3.5	3.82	—	3.8	0.017	1.20	0.0	0.05	13.51	0.00	2.256	4.67	0.00	3.9	95.6	0.5	-0.06	0.79	0.83	2.42	3.7	0.005	0.63	0.0	0.05	14.60	0.01	2.499	3.34	1.05	5.3	94.4	0.4	-0.17	0.41	0.80	0.84	2.42	25629	3165	21	0	60	0	0	logfile
✔	7WGZ	32493	2025-06-19	2021-12-29	4.5	5.31	—	4.5	0.007	0.71	0.0	0.05	15.46	0.00	1.262	7.93	0.04	5.2	94.7	0.1	-0.64	0.84	0.79	—	4.5	0.003	0.58	0.0	0.04	12.97	0.00	2.456	7.97	0.00	4.6	95.4	0.1	-0.13	0.46	0.86	0.84	—	21920	2879	11	0	25	0	0	logfile
✔	7WGV	32490	2025-06-23	2021-12-29	3.2	3.63	—	3.6	0.017	1.32	0.0	0.05	14.42	0.00	2.151	5.03	0.00	3.2	96.8	0.0	-0.59	0.79	0.83	3.26	3.6	0.003	0.64	0.0	0.05	14.64	0.00	2.416	3.48	1.28	3.3	96.7	0.0	-0.54	0.37	0.73	0.82	2.90	26931	3309	21	0	69	0	0	logfile
✔	7WG8	32480	2025-06-22	2021-12-28	3.9	4.23	—	4.0	0.003	0.61	0.0	0.04	13.84	0.00	2.155	7.08	0.00	5.0	95.0	0.0	-1.10	0.85	0.83	1.42	4.0	0.005	0.75	1.0	0.05	14.83	0.00	2.145	6.96	1.87	6.0	94.0	0.0	-0.92	1.12	0.85	0.84	1.26	25629	3189	12	0	51	0	0	logfile
✔	7WGE	32484	2025-06-06	2021-12-28	3.4	3.56	—	3.6	0.003	0.63	0.0	0.04	15.02	0.01	2.182	11.60	0.28	6.8	93.1	0.1	-0.43	0.62	0.65	1.29	3.6	0.004	0.78	0.0	0.04	17.22	0.00	1.950	10.15	2.92	8.3	91.6	0.1	-0.76	1.50	0.67	0.73	1.63	6460	804	3	0	2	0	0	logfile
✔	7WG6	32478	2025-06-23	2021-12-28	3.4	3.67	—	3.6	0.005	0.81	14.0	0.06	15.84	0.00	2.097	7.27	1.88	6.3	93.3	0.3	-1.13	0.72	0.78	2.29	3.6	0.003	0.61	0.0	0.04	14.86	0.00	2.414	5.25	1.77	5.3	94.7	0.1	-0.55	0.53	0.80	0.81	2.24	26808	3288	27	0	71	0	0	logfile
✔	7WG9	32481	2025-06-22	2021-12-28	3.5	3.81	—	3.8	0.003	0.65	0.0	0.05	14.26	0.00	2.144	7.98	0.00	5.4	94.6	0.0	-0.87	0.76	0.78	1.85	3.8	0.003	0.65	0.0	0.04	15.30	0.00	2.370	6.78	1.94	4.6	95.4	0.0	-0.28	1.27	0.77	0.82	1.77	25769	3189	19	0	61	0	0	logfile
✔	7WGR	32485	2025-06-12	2021-12-28	2.92	3.14	—	3.2	0.007	0.99	3.0	0.06	14.82	0.01	1.877	5.78	0.54	4.6	95.1	0.4	-0.28	0.69	0.78	2.90	3.2	0.005	0.84	1.0	0.05	17.01	0.00	1.951	6.15	1.95	3.8	96.1	0.1	0.21	0.47	0.69	0.82	2.98	13614	1700	4	0	6	0	0	logfile
✔	7WGC	32483	2025-06-05	2021-12-28	3.6	3.85	—	3.8	0.003	0.64	0.0	0.04	14.72	0.00	2.191	10.26	0.00	3.8	96.2	0.0	-0.11	0.56	0.55	1.21	3.8	0.003	0.66	0.0	0.04	16.04	0.00	2.554	8.85	1.57	4.6	95.4	0.0	0.09	0.34	0.56	0.55	0.94	6527	795	4	0	5	0	0	logfile
✔	7WG7	32479	2025-06-23	2021-12-28	4.0	4.39	—	4.2	0.005	0.92	0.0	0.06	19.05	0.01	2.237	6.84	0.07	7.8	92.2	0.0	-2.10	0.86	0.78	—	4.2	0.004	0.85	0.0	0.05	16.00	0.00	2.292	10.21	2.00	8.3	91.7	0.0	-1.44	1.13	0.87	0.80	—	27041	3313	25	0	73	0	0	logfile
✔	7TCN	25814	2025-06-20	2021-12-27	4.1	4.79	—	4.1	0.005	0.89	0.0	0.05	15.30	0.01	2.037	4.00	0.12	6.1	93.9	0.0	-1.35	0.84	0.79	—	4.1	0.004	0.72	0.0	0.04	13.03	0.00	2.420	6.91	0.00	6.0	94.0	0.0	-1.27	1.27	0.86	0.85	—	23747	2961	29	0	50	0	0	logfile
✔	7TCo	25815	2025-06-21	2021-12-27	4.19	4.96	—	4.3	0.005	1.09	0.0	0.06	18.06	0.01	2.228	2.57	0.00	6.4	93.5	0.1	-1.29	0.86	0.82	—	4.3	0.004	0.72	0.0	0.05	13.56	0.00	2.386	8.62	0.00	7.7	92.3	0.0	-0.58	0.53	0.86	0.84	—	23973	2979	27	0	57	0	0	logfile

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