Table showing results for June 2025

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7TCN	25814	2025-06-20	2021-12-27	4.1	4.79	—	4.1	0.005	0.89	0.0	0.05	15.30	0.01	2.037	4.00	0.12	6.1	93.9	0.0	-1.35	0.84	0.79	—	4.1	0.004	0.72	0.0	0.04	13.03	0.00	2.420	6.91	0.00	6.0	94.0	0.0	-1.27	1.27	0.86	0.85	—	23747	2961	29	0	50	0	0	logfile
✔	7WFF	32464	2025-06-27	2021-12-26	3.59	3.67	—	3.6	0.006	0.94	1.0	0.08	14.28	0.01	2.203	4.83	0.26	9.0	90.9	0.1	-4.02	0.60	0.79	2.16	3.6	0.004	0.82	0.0	0.05	16.76	0.01	2.330	15.72	2.95	8.5	91.5	0.0	-1.28	2.42	0.60	0.80	1.77	32124	4065	20	0	4	0	0	logfile
✔	7WFG	32465	2025-06-08	2021-12-26	4.33	4.89	—	4.3	0.023	1.45	1.0	0.06	11.46	0.01	2.204	8.95	1.08	12.3	87.5	0.2	-5.06	0.68	0.68	—	4.3	0.014	1.57	0.0	0.05	12.84	0.01	2.419	19.96	0.36	14.0	85.9	0.1	-2.45	1.54	0.71	0.75	—	9836	1246	11	0	125	0	0	logfile
✔	7WF3	32459	2025-06-19	2021-12-25	3.4	3.01	—	3.0	0.012	1.22	32.0	0.09	15.74	0.01	2.074	4.00	7.69	3.7	96.1	0.1	-1.54	0.56	0.77	3.55	3.0	0.003	0.54	0.0	0.04	15.55	0.00	2.532	2.73	2.99	2.6	97.3	0.1	1.34	1.02	0.69	0.88	3.12	22100	2744	25	0	8	116	0	logfile
✔	7WF4	32460	2025-06-19	2021-12-25	3.4	2.86	—	2.8	0.009	1.05	8.0	0.07	14.45	0.01	2.085	6.38	6.01	3.8	95.7	0.4	-1.41	0.61	0.73	3.58	2.8	0.003	0.57	0.0	0.04	15.31	0.00	2.521	3.54	2.23	3.6	96.2	0.2	1.19	0.67	0.71	0.85	3.25	22143	2760	25	0	7	100	0	logfile
✔	7Qoo	14098	2025-06-20	2021-12-24	4.6	3.65	—	2.7	0.005	0.99	0.0	0.05	11.19	0.01	2.363	2.24	0.15	3.2	96.8	0.0	-5.80	0.71	0.55	—	2.4	0.003	0.75	0.0	0.04	13.25	0.00	2.409	10.29	0.00	3.5	96.5	0.0	0.53	1.58	0.74	0.64	—	24085	2958	15	0	15	0	0	logfile
✔	7Qo9	14087	2025-06-08	2021-12-23	3.88	4.22	—	4.1	0.004	0.78	6.0	0.06	16.66	0.01	2.179	10.13	1.29	9.2	90.3	0.5	-1.18	0.68	0.78	1.87	4.1	0.003	0.71	0.0	0.04	16.59	0.00	2.353	8.75	2.58	10.0	89.9	0.2	-1.34	1.57	0.68	0.78	1.80	9180	1166	6	0	9	3	0	logfile
✔	7TCA	25807	2025-06-29	2021-12-23	3.85	5.12	4.09	4.0	0.003	0.69	0.0	0.05	14.12	0.00	2.132	9.78	0.00	7.0	92.5	0.4	-0.96	0.88	0.77	1.29	4.0	0.003	0.65	0.0	0.04	14.55	0.00	2.400	10.02	0.98	6.8	92.8	0.4	-0.70	0.51	0.89	0.83	1.21	33705	4244	24	0	56	0	0	logfile
✔	7WE9	32443	2025-06-27	2021-12-23	3.6	3.89	—	3.8	0.005	0.72	1.0	0.05	16.56	0.00	2.118	12.27	0.17	8.2	91.7	0.1	-2.16	0.76	0.73	1.62	3.7	0.004	0.68	0.0	0.05	14.98	0.00	2.369	9.17	1.86	7.4	92.5	0.1	-1.89	1.14	0.76	0.73	1.13	32043	3987	32	0	72	0	0	logfile
✔	7Qo7	14086	2025-06-23	2021-12-23	3.02	3.67	—	3.4	0.004	0.66	0.0	0.05	21.44	0.00	2.165	6.51	0.07	6.0	93.8	0.2	-0.66	0.80	0.82	2.27	3.4	0.002	0.66	0.0	0.05	15.44	0.00	2.329	5.97	0.84	5.9	93.8	0.2	-0.87	0.42	0.79	0.83	2.29	26865	3295	29	0	81	0	0	logfile
✔	7TC8	25805	2025-06-17	2021-12-23	2.4	2.46	—	2.5	0.008	0.68	0.0	0.05	17.52	0.00	1.659	12.50	3.31	2.3	97.7	0.0	0.38	0.74	0.86	5.19	2.5	0.005	0.54	0.0	0.04	17.36	0.00	1.745	14.00	2.53	2.2	97.8	0.0	1.17	0.28	0.75	0.87	5.16	20567	2113	8	0	4	0	3200	logfile
✔	7WEE	32448	2025-06-04	2021-12-23	4.0	4.09	—	4.1	0.005	0.72	0.0	0.04	12.68	0.01	2.116	8.35	0.00	4.5	95.5	0.0	-1.60	0.48	0.80	—	4.0	0.006	0.75	0.0	0.05	15.45	0.01	2.552	9.71	3.77	9.7	90.3	0.0	-1.37	0.45	0.48	0.83	—	3350	429	3	0	0	0	0	logfile
✔	7WED	32447	2025-06-04	2021-12-23	3.5	3.62	—	3.7	0.003	0.71	0.0	0.05	13.75	0.01	2.285	7.13	0.00	8.2	91.8	0.0	-1.64	0.57	0.77	2.25	3.6	0.004	0.71	0.0	0.05	16.54	0.01	2.546	6.53	3.27	7.5	92.5	0.0	-1.21	1.14	0.57	0.78	2.10	3358	431	3	0	0	0	0	logfile
✔	7WEA	32444	2025-06-26	2021-12-23	3.3	3.61	—	3.5	0.004	0.79	0.0	0.05	15.89	0.00	2.111	10.04	0.03	5.8	94.1	0.1	-2.05	0.80	0.81	2.48	3.5	0.005	0.73	0.0	0.05	14.97	0.00	2.052	8.20	1.47	7.9	92.1	0.0	-1.51	0.37	0.79	0.82	2.19	30413	3754	30	0	74	0	0	logfile
✔	7WE7	32441	2025-06-28	2021-12-23	3.8	4.19	—	3.9	0.006	0.79	2.0	0.06	15.07	0.00	1.378	12.84	0.87	5.0	94.9	0.1	-1.30	0.84	0.78	1.49	3.9	0.005	0.78	2.0	0.04	14.70	0.00	1.689	13.29	1.42	5.5	94.5	0.1	-1.04	0.44	0.86	0.82	1.15	32095	3981	33	0	74	0	0	logfile
✘	7Qo1	14080	2025-06-12	2021-12-23	4.4	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	14179	1694	9	62	1	0	0	logfile
✔	7WEF	32449	2025-06-04	2021-12-23	3.8	3.60	—	3.9	0.003	0.63	0.0	0.04	12.72	0.00	2.239	8.92	0.00	7.5	92.5	0.0	-1.27	0.53	0.76	2.61	3.8	0.004	0.68	0.0	0.04	14.92	0.00	2.522	6.00	4.19	6.8	93.2	0.0	-1.55	1.16	0.53	0.77	1.92	3328	432	3	0	0	0	0	logfile
✔	7TC7	25804	2025-06-17	2021-12-23	2.9	2.75	—	2.9	0.007	0.58	0.0	0.04	13.89	0.00	1.792	14.53	0.17	2.3	97.7	0.0	1.00	0.72	0.86	4.97	2.9	0.005	0.51	0.0	0.04	15.89	0.00	1.826	12.76	1.46	2.6	97.4	0.0	1.28	0.31	0.70	0.86	4.41	20567	2113	8	0	4	0	3200	logfile
✔	7TCi	25813	2025-06-13	2021-12-23	3.9	4.11	—	4.1	0.006	0.62	0.0	0.04	13.44	0.00	2.282	6.98	2.95	2.2	97.8	0.0	2.98	0.64	0.81	1.85	4.1	0.003	0.66	0.0	0.04	16.05	0.00	2.347	8.47	4.56	2.7	97.3	0.0	2.23	1.30	0.65	0.79	1.56	15084	1916	16	0	16	0	0	logfile
✔	7WEB	32445	2025-06-26	2021-12-23	3.7	3.99	—	3.7	0.004	0.66	1.0	0.05	16.00	0.00	2.109	11.89	0.15	5.7	94.2	0.1	-1.30	0.84	0.82	1.60	3.7	0.003	0.64	0.0	0.04	14.95	0.00	2.208	9.18	1.47	5.5	94.4	0.0	-0.99	0.42	0.84	0.82	1.46	30413	3754	30	0	74	0	0	logfile

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