Table showing results for June 2025

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7WEF	32449	2025-06-04	2021-12-23	3.8	3.60	—	3.9	0.003	0.63	0.0	0.04	12.72	0.00	2.239	8.92	0.00	7.5	92.5	0.0	-1.27	0.53	0.76	2.61	3.8	0.004	0.68	0.0	0.04	14.92	0.00	2.522	6.00	4.19	6.8	93.2	0.0	-1.55	1.16	0.53	0.77	1.92	3328	432	3	0	0	0	0	logfile
✔	7WED	32447	2025-06-04	2021-12-23	3.5	3.62	—	3.7	0.003	0.71	0.0	0.05	13.75	0.01	2.285	7.13	0.00	8.2	91.8	0.0	-1.64	0.57	0.77	2.25	3.6	0.004	0.71	0.0	0.05	16.54	0.01	2.546	6.53	3.27	7.5	92.5	0.0	-1.21	1.14	0.57	0.78	2.10	3358	431	3	0	0	0	0	logfile
✔	7TBG	25798	2025-06-22	2021-12-22	2.5	2.10	2.44	1.8	0.006	0.76	0.0	0.05	13.03	0.01	2.268	1.89	0.57	3.2	96.8	0.0	0.60	0.75	0.79	4.65	1.8	0.004	0.58	0.0	0.04	15.98	0.00	2.325	3.67	1.23	1.8	98.2	0.0	2.62	1.13	0.77	0.82	3.47	19679	1190	6	0	5	20	9858	logfile
✔	7TBW	25800	2025-06-14	2021-12-22	3.1	3.10	2.84	3.2	0.003	0.63	0.0	0.04	14.88	0.00	2.101	8.64	1.23	5.2	94.8	0.0	-2.02	0.67	0.79	1.46	3.2	0.003	0.83	0.0	0.04	15.07	0.00	1.939	8.21	2.82	6.1	93.9	0.0	0.45	0.67	0.72	0.88	2.45	15338	1928	4	0	14	0	0	logfile
✔	7TBY	25801	2025-06-12	2021-12-22	4.0	4.05	3.80	3.9	0.003	0.62	0.0	0.04	15.63	0.00	2.155	7.36	0.00	5.0	95.0	0.0	-2.45	0.70	0.79	—	3.8	0.003	0.70	0.0	0.04	14.96	0.00	2.455	7.67	2.93	5.8	94.2	0.0	0.40	1.36	0.72	0.83	—	13281	1788	4	0	10	0	0	logfile
✔	7TBZ	25802	2025-06-12	2021-12-22	4.3	4.56	4.01	4.0	0.002	0.57	0.0	0.04	14.93	0.00	2.207	6.66	0.00	3.8	96.2	0.1	-2.61	0.70	0.77	—	4.0	0.003	0.67	0.0	0.04	12.16	0.00	2.446	8.22	0.08	5.6	94.4	0.0	0.34	2.65	0.72	0.81	—	13275	1788	4	0	10	0	0	logfile
✔	7TC0	25803	2025-06-12	2021-12-22	3.1	3.02	2.78	3.2	0.005	0.60	3.0	0.04	15.73	0.01	2.141	8.24	2.49	4.1	95.9	0.0	-1.78	0.74	0.81	1.67	3.2	0.003	0.64	0.0	0.04	14.80	0.00	2.141	4.91	2.41	5.3	94.7	0.0	0.96	1.29	0.77	0.87	1.93	13809	1781	4	0	11	0	0	logfile
✔	7TBF	25797	2025-06-05	2021-12-21	3.1	3.60	3.16	3.4	0.008	0.88	0.0	0.05	13.38	0.01	2.064	6.47	0.00	14.9	84.6	0.5	-3.53	0.83	0.81	3.20	3.4	0.004	0.77	0.0	0.04	15.42	0.00	2.301	6.24	3.71	14.0	85.6	0.5	-2.57	1.00	0.84	0.85	3.05	6617	857	6	0	2	0	0	logfile
✔	7TAP	25780	2025-06-19	2021-12-21	2.8	3.00	—	3.0	0.013	1.49	4.0	0.07	15.28	0.01	2.225	8.19	1.37	1.3	98.6	0.1	0.26	0.64	0.81	3.41	3.0	0.003	0.54	0.0	0.04	16.06	0.00	2.556	8.79	2.05	1.3	98.7	0.0	2.16	2.55	0.65	0.84	3.10	22520	2915	22	0	8	0	0	logfile
✔	7WDK	32438	2025-06-08	2021-12-21	3.05	3.04	—	3.1	0.004	0.74	0.0	0.05	14.65	0.01	2.201	14.24	0.51	7.8	92.2	0.0	-1.03	0.58	0.65	2.10	3.1	0.003	0.61	0.0	0.04	16.28	0.00	2.490	8.76	2.16	6.0	94.0	0.0	-0.70	0.32	0.59	0.67	1.67	9461	1215	2	0	0	0	0	logfile
✔	7TAT	25784	2025-06-20	2021-12-21	3.2	3.44	3.17	3.4	0.010	1.36	1.0	0.08	9.44	0.01	2.376	0.60	0.18	2.8	96.8	0.4	0.25	0.74	0.78	4.94	3.5	0.003	0.61	0.0	0.05	11.67	0.00	2.485	2.68	1.42	1.8	98.1	0.1	0.63	0.51	0.71	0.79	4.39	23926	3564	20	0	53	0	0	logfile
✔	7TAS	25783	2025-06-04	2021-12-21	3.2	3.49	3.24	3.4	0.014	1.53	0.0	0.09	11.33	0.01	2.452	3.63	1.69	3.9	96.1	0.0	-1.01	0.68	0.83	4.31	3.4	0.003	0.69	0.0	0.04	13.60	0.00	2.554	3.80	2.36	3.4	96.6	0.0	0.06	0.53	0.66	0.86	4.26	3147	417	4	0	3	0	0	logfile
✔	7TB4	25792	2025-06-23	2021-12-21	3.29	4.32	3.44	3.7	0.003	0.65	0.0	0.05	14.80	0.00	2.173	7.13	0.03	7.1	92.6	0.3	-1.22	0.86	0.78	2.24	3.7	0.005	0.66	0.0	0.04	14.43	0.00	2.497	7.64	1.03	7.6	92.2	0.2	-0.90	0.51	0.90	0.87	2.23	26897	3329	21	0	59	0	0	logfile
✔	7TAN	25777	2025-06-10	2021-12-21	3.0	2.95	—	3.1	0.003	0.47	0.0	0.03	27.16	0.00	2.287	3.25	0.00	2.8	97.2	0.0	2.18	0.82	0.85	2.22	3.1	0.004	0.50	0.0	0.03	27.61	0.00	2.500	2.56	2.19	2.1	97.9	0.0	2.38	0.32	0.83	0.87	2.15	12119	768	12	294	0	0	0	logfile
✔	7TAX	25789	2025-06-24	2021-12-21	2.8	3.31	—	3.3	0.003	0.67	0.0	0.04	16.22	0.01	2.236	6.32	0.00	4.6	95.4	0.0	-0.99	0.64	0.56	0.11	3.2	0.005	0.83	1.0	0.04	18.59	0.00	2.026	10.09	2.03	4.8	95.2	0.0	0.05	1.22	0.76	0.84	2.59	27855	3349	14	99	0	0	0	logfile
✔	7WDF	32437	2025-06-27	2021-12-21	3.9	4.20	—	4.0	0.002	0.51	0.0	0.04	7.63	0.00	2.170	7.49	0.00	4.3	95.6	0.1	-1.73	0.54	0.40	0.73	4.0	0.004	0.84	0.0	0.05	14.44	0.00	2.439	18.78	2.18	4.7	95.3	0.0	-1.37	1.63	0.76	0.72	0.63	31998	4101	7	0	0	0	0	logfile
✔	7WD8	32434	2025-06-04	2021-12-21	4.3	3.48	—	3.5	0.002	0.51	0.0	0.04	6.43	0.00	2.246	8.80	0.00	4.1	95.7	0.2	-0.96	0.60	0.61	—	3.5	0.003	0.72	0.0	0.04	12.11	0.00	2.595	11.44	0.00	4.3	95.5	0.2	0.02	1.60	0.62	0.66	—	4029	524	4	0	0	0	0	logfile
✔	7WD0	32431	2025-06-27	2021-12-20	3.3	3.23	—	3.0	0.003	0.69	0.0	0.05	12.95	0.01	2.287	2.93	0.17	3.7	96.3	0.0	-3.08	0.75	0.67	1.53	3.0	0.004	0.68	0.0	0.04	15.28	0.00	2.536	8.82	2.31	5.4	94.6	0.0	-0.30	1.80	0.79	0.75	1.63	31996	4099	7	0	0	0	0	logfile
✔	7WCZ	32430	2025-06-24	2021-12-20	3.5	3.70	—	3.7	0.009	0.70	0.0	0.05	12.67	0.01	1.948	4.38	0.12	3.6	96.4	0.0	-3.24	0.65	0.64	1.48	3.6	0.003	0.65	0.0	0.04	15.60	0.00	2.416	8.57	2.52	3.8	96.2	0.0	-0.22	1.51	0.69	0.72	1.30	28679	3668	5	0	0	0	0	logfile
✔	7QN8	14070	2025-06-15	2021-12-20	3.1	3.39	—	3.2	0.003	0.47	0.0	0.04	10.68	0.00	2.247	3.93	0.34	0.5	99.5	0.0	2.21	0.79	0.86	3.96	3.1	0.006	0.90	0.0	0.05	13.06	0.00	2.244	7.85	1.97	1.2	98.8	0.0	1.86	0.80	0.80	0.91	4.17	16755	1992	19	0	32	0	0	logfile

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