Table showing results for June 2025

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7QN9	14071	2025-06-14	2021-12-20	2.9	3.47	—	3.1	0.003	0.64	0.0	0.05	13.26	0.01	2.164	6.25	0.48	2.1	97.9	0.0	0.56	0.78	0.86	4.01	3.2	0.004	0.75	0.0	0.05	14.10	0.00	2.481	8.36	1.14	2.0	98.0	0.0	1.31	2.78	0.79	0.89	3.98	15696	1889	19	0	31	0	0	logfile
✔	7WCZ	32430	2025-06-24	2021-12-20	3.5	3.70	—	3.7	0.009	0.70	0.0	0.05	12.67	0.01	1.948	4.38	0.12	3.6	96.4	0.0	-3.24	0.65	0.64	1.48	3.6	0.003	0.65	0.0	0.04	15.60	0.00	2.416	8.57	2.52	3.8	96.2	0.0	-0.22	1.51	0.69	0.72	1.30	28679	3668	5	0	0	0	0	logfile
✔	7QN6	14068	2025-06-15	2021-12-20	2.9	2.96	—	2.9	0.003	0.47	0.0	0.04	12.10	0.00	2.205	5.05	0.39	0.9	99.1	0.0	2.50	0.74	0.86	4.53	2.8	0.003	0.70	0.0	0.05	15.16	0.00	2.429	7.33	2.30	1.1	98.9	0.0	1.62	1.47	0.76	0.90	4.44	16821	1995	20	0	32	0	0	logfile
✔	7T9T	25767	2025-06-24	2021-12-20	3.7	4.42	—	3.8	0.005	0.91	0.0	0.05	16.30	0.00	2.036	2.19	0.12	5.2	94.7	0.1	-1.22	0.83	0.77	1.56	3.8	0.005	0.77	0.0	0.05	15.04	0.00	2.388	6.68	2.01	7.0	93.0	0.0	-1.03	0.70	0.84	0.82	1.82	24065	2976	33	0	66	0	0	logfile
✔	7QNB	14073	2025-06-13	2021-12-20	3.1	3.62	—	3.3	0.003	0.46	0.0	0.04	11.20	0.00	2.241	5.47	0.56	1.7	98.3	0.0	1.87	0.75	0.84	3.27	3.3	0.003	0.67	0.0	0.04	12.71	0.00	2.479	7.47	1.13	2.0	98.0	0.0	1.12	2.15	0.78	0.89	3.88	14793	1767	15	0	24	0	0	logfile
✔	7QNC	14074	2025-06-14	2021-12-20	2.9	3.35	—	3.1	0.003	0.60	0.0	0.05	12.80	0.01	2.276	3.01	0.48	1.7	98.3	0.0	0.92	0.79	0.88	4.62	3.1	0.004	0.72	0.0	0.05	14.30	0.00	2.414	7.01	2.03	1.5	98.5	0.0	1.65	1.18	0.79	0.91	4.28	15861	1881	19	0	39	0	0	logfile
✔	7WCR	32428	2025-06-05	2021-12-20	3.5	3.71	—	4.0	0.003	0.71	0.0	0.05	12.88	0.01	1.713	4.50	1.28	2.7	96.9	0.3	-2.76	0.57	0.64	1.03	3.7	0.004	0.73	0.0	0.04	15.75	0.00	2.433	9.83	3.28	5.8	94.2	0.0	-0.72	0.80	0.61	0.70	1.43	4880	628	3	0	0	0	0	logfile
✔	7WCN	32425	2025-06-06	2021-12-20	2.87	2.37	—	2.8	0.005	0.70	1.0	0.05	14.77	0.00	2.257	4.26	0.00	3.9	96.1	0.0	0.37	0.59	0.83	3.43	2.8	0.003	0.61	0.0	0.04	17.19	0.00	2.487	3.96	2.14	3.8	96.2	0.0	0.84	0.92	0.58	0.85	3.03	8252	1049	6	0	1	0	0	logfile
✔	7WCK	32423	2025-06-04	2021-12-20	3.49	3.79	—	3.6	0.008	1.35	1.0	0.07	13.91	0.01	2.057	11.02	0.28	7.6	90.7	1.7	-3.09	0.67	0.79	2.16	3.6	0.004	0.84	0.0	0.05	14.80	0.01	2.517	14.17	1.69	8.6	90.9	0.5	-2.24	0.48	0.68	0.82	2.07	3245	416	3	0	0	0	0	logfile
✔	7WCU	32429	2025-06-04	2021-12-20	3.09	3.27	—	3.2	0.009	1.16	0.0	0.06	13.76	0.01	2.289	6.61	0.29	7.8	92.2	0.0	-2.63	0.61	0.82	3.98	3.2	0.004	0.70	0.0	0.04	15.81	0.00	2.516	8.97	3.71	7.8	92.2	0.0	-2.21	0.48	0.61	0.83	3.15	3248	416	3	0	0	0	0	logfile
✔	7TAC	25769	2025-06-10	2021-12-20	3.6	3.94	—	3.9	0.004	0.86	0.0	0.05	14.71	0.01	2.149	12.22	0.00	2.3	97.7	0.0	0.94	0.66	0.69	1.31	3.9	0.003	0.68	0.0	0.04	16.81	0.00	2.532	8.88	2.19	2.3	97.7	0.0	3.17	0.56	0.66	0.71	0.84	11842	1526	12	0	6	0	0	logfile
✔	7QNA	14072	2025-06-13	2021-12-20	3.0	3.58	—	3.3	0.003	0.49	0.0	0.04	11.46	0.00	2.271	4.69	0.76	1.2	98.8	0.0	1.88	0.76	0.86	3.66	3.3	0.004	0.70	0.0	0.04	13.38	0.00	2.459	7.17	1.39	1.7	98.3	0.0	1.41	2.64	0.77	0.89	3.87	14777	1763	16	0	29	0	0	logfile
✔	7TAD	25771	2025-06-07	2021-12-20	3.6	3.82	—	3.8	0.003	0.71	0.0	0.04	14.28	0.01	2.126	10.39	0.00	2.8	97.2	0.0	0.68	0.62	0.64	1.42	3.8	0.003	0.66	0.0	0.04	16.28	0.00	2.403	8.16	2.12	2.7	97.3	0.0	2.60	0.50	0.64	0.67	1.32	8550	1113	8	0	4	0	0	logfile
✔	7WCH	32422	2025-06-24	2021-12-20	3.19	3.55	—	3.4	0.018	1.53	15.0	0.08	14.51	0.01	1.327	9.38	0.93	7.8	91.1	1.1	-2.89	0.72	0.76	2.26	3.4	0.004	0.70	0.0	0.05	15.63	0.00	2.456	8.29	1.66	6.0	93.9	0.2	-1.30	0.73	0.77	0.86	2.33	28319	3676	9	0	0	0	0	logfile
✔	7WCo	32426	2025-06-07	2021-12-20	3.8	3.89	—	3.9	0.008	1.13	0.0	0.06	11.02	0.01	0.599	4.59	0.53	14.2	85.8	0.0	-5.43	0.56	0.85	2.78	3.9	0.005	0.80	0.0	0.05	15.31	0.01	2.526	10.50	3.70	10.5	89.5	0.0	-2.71	1.52	0.56	0.85	2.79	8950	1195	15	0	0	0	0	logfile
✔	7WD0	32431	2025-06-27	2021-12-20	3.3	3.23	—	3.0	0.003	0.69	0.0	0.05	12.95	0.01	2.287	2.93	0.17	3.7	96.3	0.0	-3.08	0.75	0.67	1.53	3.0	0.004	0.68	0.0	0.04	15.28	0.00	2.536	8.82	2.31	5.4	94.6	0.0	-0.30	1.80	0.79	0.75	1.63	31996	4099	7	0	0	0	0	logfile
✔	7QLA	14066	2025-06-05	2021-12-20	3.85	3.91	3.77	3.9	0.003	0.62	0.0	0.04	13.83	0.00	2.117	13.19	0.00	6.4	93.6	0.0	-1.33	0.72	0.76	1.18	3.9	0.004	0.76	0.0	0.04	16.03	0.00	2.539	13.05	3.79	6.0	94.0	0.0	-0.67	0.54	0.73	0.77	1.29	6837	874	2	0	0	0	0	logfile
✔	7TAi	25775	2025-06-10	2021-12-20	3.2	3.59	3.19	3.5	0.009	0.86	0.0	0.05	19.15	0.01	2.087	12.50	1.06	2.8	97.2	0.0	0.97	0.71	0.84	2.65	3.5	0.003	0.55	0.0	0.04	15.42	0.01	2.349	10.05	1.68	2.9	97.1	0.0	1.91	2.42	0.75	0.86	2.05	11109	1272	6	0	18	0	0	logfile
✔	7WCP	32427	2025-06-24	2021-12-20	3.01	3.31	—	3.2	0.015	1.29	11.0	0.08	14.69	0.01	1.667	6.80	1.57	7.6	92.2	0.2	-2.72	0.70	0.82	2.24	3.2	0.003	0.60	0.0	0.04	15.40	0.00	2.496	7.19	1.51	5.6	94.4	0.0	-1.00	1.16	0.68	0.82	2.22	28328	3676	9	0	0	0	0	logfile
✔	7T9F	25756	2025-06-12	2021-12-19	3.23	3.51	3.48	3.5	0.004	0.84	0.0	0.09	13.18	0.00	1.988	5.27	0.28	3.6	96.4	0.0	0.16	0.64	0.80	3.49	3.5	0.002	0.58	0.0	0.08	14.84	0.00	2.369	7.10	1.14	4.0	96.0	0.0	1.40	0.51	0.65	0.84	3.39	13640	890	2	0	0	0	6958	logfile

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