Table showing results for June 2025

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7T9i	25758	2025-06-20	2021-12-19	2.9	2.43	—	1.8	0.005	0.94	1.0	0.05	12.78	0.01	2.016	3.30	0.62	3.6	96.4	0.0	-0.16	0.69	0.63	2.32	1.8	0.004	0.70	0.0	0.04	15.01	0.00	2.349	7.49	2.42	6.3	93.7	0.0	-0.59	1.11	0.74	0.72	2.50	23529	1532	11	0	8	0	11557	logfile
✔	7QL6	14065	2025-06-15	2021-12-19	3.23	3.65	3.40	3.6	0.004	0.68	1.0	0.05	15.26	0.00	2.258	7.26	0.60	3.3	96.7	0.0	0.66	0.72	0.80	3.00	3.5	0.003	0.58	0.0	0.04	14.06	0.00	2.448	7.59	2.07	3.3	96.7	0.0	0.70	1.29	0.72	0.82	3.09	16617	1990	15	0	38	0	0	logfile
✔	7QL3	14062	2025-06-04	2021-12-19	3.32	3.47	3.00	3.5	0.011	2.01	8.0	0.11	12.27	0.01	2.489	0.00	0.00	7.7	92.3	0.0	-3.47	0.46	0.82	4.29	3.5	0.006	0.90	0.0	0.05	13.74	0.01	2.370	4.53	2.15	6.3	93.7	0.0	-3.13	1.12	0.43	0.84	4.95	3246	426	6	0	0	0	0	logfile
✔	7QKV	14054	2025-06-08	2021-12-19	3.23	2.84	3.17	3.3	0.011	1.92	0.0	0.09	12.28	0.02	2.512	0.73	0.00	3.5	96.5	0.0	-2.11	0.37	0.72	4.94	3.2	0.002	0.56	0.0	0.05	16.17	0.00	2.303	5.64	1.85	4.0	96.0	0.0	-2.46	1.34	0.37	0.80	5.65	9585	621	9	0	0	0	4887	logfile
✔	7QL4	14063	2025-06-06	2021-12-19	3.2	3.36	2.98	3.5	0.011	1.86	0.0	0.10	12.28	0.01	2.511	0.28	0.00	8.3	91.7	0.0	-1.77	0.26	0.51	0.51	3.4	0.002	0.61	0.0	0.05	15.06	0.01	2.361	6.79	0.76	0.9	99.1	0.0	-2.00	3.10	0.31	0.73	2.65	7074	456	6	0	0	0	3606	logfile
✔	7QKX	14056	2025-06-05	2021-12-19	3.16	3.10	2.99	3.2	0.011	1.82	0.0	0.09	10.51	0.01	2.523	0.00	0.00	3.3	96.7	0.0	-1.48	0.39	0.79	6.00	3.2	0.003	0.57	0.0	0.05	12.63	0.00	2.472	2.93	0.26	2.8	97.2	0.0	-1.84	0.83	0.40	0.85	5.79	6822	438	6	0	0	0	3480	logfile
✔	7T9M	25762	2025-06-14	2021-12-19	3.1	4.03	3.20	3.4	0.005	0.88	2.0	0.06	12.80	0.01	2.079	5.13	0.91	4.0	96.0	0.0	0.15	0.70	0.76	3.31	3.4	0.003	0.55	0.0	0.04	13.38	0.00	2.241	5.90	0.68	4.0	96.0	0.0	0.74	0.67	0.70	0.80	3.05	15546	995	5	0	5	0	7719	logfile
✔	7QKW	14055	2025-06-05	2021-12-19	2.32	1.74	2.58	2.3	0.010	1.93	1.0	0.10	13.53	0.01	2.534	0.00	0.00	5.4	94.6	0.0	-2.79	0.41	0.81	7.02	2.3	0.002	0.52	0.0	0.05	16.34	0.00	2.612	2.13	1.45	4.4	95.6	0.0	-2.89	1.31	0.42	0.84	6.03	4707	306	6	0	0	0	2439	logfile
✔	7T9N	25763	2025-06-23	2021-12-19	2.9	2.10	—	2.9	0.006	0.75	0.0	0.06	13.94	0.01	2.020	6.08	0.21	4.1	95.9	0.0	0.67	0.70	0.73	3.97	2.9	0.004	0.59	0.0	0.06	14.93	0.00	2.280	4.83	1.10	3.9	96.1	0.0	0.26	1.08	0.77	0.80	4.13	26426	1723	8	0	4	0	13037	logfile
✔	7QL1	14060	2025-06-04	2021-12-19	3.34	3.41	2.19	3.4	0.011	2.01	0.0	0.10	11.06	0.01	2.654	0.29	0.00	7.5	92.5	0.0	-3.09	0.42	0.83	4.57	3.4	0.003	0.71	0.0	0.05	15.26	0.00	2.546	4.69	3.12	3.3	96.7	0.0	-2.30	1.62	0.37	0.80	4.15	1671	219	3	0	0	0	0	logfile
✔	7QL0	14059	2025-06-05	2021-12-19	3.13	2.96	2.96	3.1	0.011	1.87	0.0	0.09	12.06	0.01	2.510	0.00	0.00	4.0	96.0	0.0	-2.04	0.39	0.77	6.02	3.1	0.002	0.56	0.0	0.05	14.48	0.00	2.502	3.13	1.67	0.7	99.3	0.0	-1.68	1.54	0.41	0.83	5.68	6390	414	6	0	0	0	3258	logfile
✔	7QL5	14064	2025-06-15	2021-12-19	2.5	2.78	2.57	2.8	0.008	0.96	2.0	0.05	18.22	0.00	2.199	8.49	1.03	3.7	96.3	0.0	0.95	0.70	0.87	4.71	2.8	0.003	0.60	0.0	0.04	15.18	0.00	2.426	7.06	1.58	3.5	96.5	0.0	1.24	0.34	0.73	0.89	4.52	17028	1989	19	0	50	2	0	logfile
✔	7T9J	25759	2025-06-19	2021-12-19	2.79	3.38	—	3.2	0.006	0.89	0.0	0.06	13.01	0.01	2.225	4.49	0.17	1.7	98.2	0.0	0.20	0.77	0.71	1.43	3.1	0.006	0.69	0.0	0.05	14.52	0.00	2.484	8.43	1.60	2.6	97.4	0.0	0.35	1.11	0.81	0.83	2.57	21960	2703	24	0	58	0	0	logfile
✔	7QKZ	14058	2025-06-04	2021-12-19	2.65	2.79	2.23	3.2	0.013	2.86	9.0	0.34	18.75	0.02	2.498	0.59	0.00	9.9	90.1	0.0	-1.61	0.34	0.61	7.02	2.7	0.006	1.51	0.0	0.38	19.69	0.01	2.265	10.64	2.02	1.2	98.8	0.0	-1.52	5.47	0.33	0.62	6.43	1701	99	9	0	0	0	891	logfile
✔	7QKU	14053	2025-06-04	2021-12-19	2.57	2.42	2.48	2.7	0.011	1.83	5.0	0.10	11.69	0.01	2.516	0.28	0.00	5.2	94.8	0.0	-1.72	0.47	0.88	5.27	2.7	0.003	0.62	0.0	0.05	17.57	0.00	2.612	2.98	3.03	3.4	96.6	0.0	-2.19	1.33	0.47	0.91	5.45	3456	453	6	0	0	0	0	logfile
✔	7T9G	25757	2025-06-12	2021-12-19	2.83	3.04	2.97	3.0	0.003	0.55	0.0	0.08	12.68	0.00	2.023	5.64	0.00	4.1	95.9	0.0	1.69	0.67	0.87	3.83	3.0	0.003	0.55	0.0	0.08	15.06	0.00	2.150	4.46	1.42	4.1	95.9	0.0	1.82	1.25	0.68	0.89	3.72	13649	890	6	0	4	5	6958	logfile
✔	7T9F	25756	2025-06-12	2021-12-19	3.23	3.51	3.48	3.5	0.004	0.84	0.0	0.09	13.18	0.00	1.988	5.27	0.28	3.6	96.4	0.0	0.16	0.64	0.80	3.49	3.5	0.002	0.58	0.0	0.08	14.84	0.00	2.369	7.10	1.14	4.0	96.0	0.0	1.40	0.51	0.65	0.84	3.39	13640	890	2	0	0	0	6958	logfile
✔	7QL2	14061	2025-06-04	2021-12-19	2.95	2.96	2.66	3.1	0.010	2.11	2.0	0.11	10.98	0.01	2.674	0.00	0.00	7.6	92.4	0.0	-2.82	0.30	0.74	4.50	3.4	0.003	0.56	0.0	0.05	12.33	0.00	2.626	1.75	1.48	11.8	88.2	0.0	-3.31	0.84	0.23	0.73	4.26	2286	150	3	0	0	0	1179	logfile
✔	7WCD	32421	2025-06-28	2021-12-19	3.3	3.43	—	3.4	0.004	0.65	3.0	0.05	14.74	0.00	2.026	13.31	0.24	4.9	95.1	0.0	0.01	0.76	0.75	2.77	3.4	0.003	0.54	0.0	0.04	14.27	0.00	2.312	5.26	2.05	4.4	95.6	0.0	0.17	0.41	0.79	0.79	2.69	33525	4284	12	0	33	0	0	logfile
✔	7QKS	14050	2025-06-08	2021-12-18	3.1	3.39	3.08	3.3	0.005	0.74	0.0	0.05	14.59	0.01	2.210	4.65	0.10	1.8	98.2	0.0	0.65	0.75	0.87	2.33	3.3	0.003	0.51	0.0	0.04	15.50	0.00	2.556	5.18	2.37	1.7	98.3	0.0	2.15	0.91	0.72	0.88	1.88	9339	1199	2	0	1	0	0	logfile

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