Table showing results for June 2025

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7QKo	14048	2025-06-15	2021-12-18	2.9	3.22	3.03	3.2	0.006	0.85	0.0	0.05	18.35	0.00	2.242	8.07	1.25	1.9	98.1	0.0	0.18	0.58	0.76	3.35	3.2	0.003	0.61	0.0	0.04	15.73	0.00	2.478	7.17	2.77	2.9	97.1	0.0	0.61	0.40	0.61	0.80	3.17	17042	1996	17	0	49	0	0	logfile
✔	7QKS	14050	2025-06-08	2021-12-18	3.1	3.39	3.08	3.3	0.005	0.74	0.0	0.05	14.59	0.01	2.210	4.65	0.10	1.8	98.2	0.0	0.65	0.75	0.87	2.33	3.3	0.003	0.51	0.0	0.04	15.50	0.00	2.556	5.18	2.37	1.7	98.3	0.0	2.15	0.91	0.72	0.88	1.88	9339	1199	2	0	1	0	0	logfile
✔	7T96	25752	2025-06-11	2021-12-18	3.22	2.43	—	2.2	0.008	0.94	3.0	0.06	12.64	0.00	2.091	11.18	0.35	7.3	92.7	0.0	-0.99	0.77	0.77	2.54	2.2	0.003	0.69	0.0	0.04	15.19	0.00	2.466	6.22	3.57	5.8	94.2	0.0	0.01	0.96	0.79	0.80	1.64	8450	1122	6	0	2	0	0	logfile
✔	7T9B	25755	2025-06-18	2021-12-18	3.72	4.06	3.76	3.9	0.021	1.80	0.0	0.13	12.57	0.01	2.289	1.04	0.98	3.7	95.6	0.7	0.40	0.81	0.86	2.63	3.9	0.004	0.70	0.0	0.04	12.90	0.00	2.318	5.04	1.29	4.5	95.3	0.2	-0.07	1.79	0.81	0.86	2.31	21592	2595	42	0	101	0	0	logfile
✔	7T90	25749	2025-06-11	2021-12-17	3.32	3.71	—	3.6	0.006	0.95	3.0	0.06	12.71	0.00	2.146	10.23	0.23	5.1	94.9	0.0	-0.77	0.69	0.79	2.80	3.6	0.003	0.63	0.0	0.04	15.28	0.00	2.390	6.66	2.08	4.9	95.1	0.0	0.42	0.98	0.70	0.83	2.18	8451	1124	6	0	1	1	0	logfile
✔	7T8X	25748	2025-06-11	2021-12-17	3.21	3.47	—	3.5	0.004	0.72	0.0	0.05	12.83	0.00	2.063	7.65	0.00	3.8	96.2	0.0	0.02	0.69	0.83	3.18	3.5	0.003	0.62	0.0	0.04	14.70	0.00	2.439	5.52	1.89	3.9	96.1	0.0	0.35	0.36	0.70	0.87	2.40	8555	1126	6	0	1	0	0	logfile
✔	7T94	25751	2025-06-11	2021-12-17	3.16	2.39	—	2.1	0.007	0.93	2.0	0.06	12.23	0.00	2.081	8.29	0.12	5.3	94.7	0.0	-0.68	0.77	0.77	3.26	2.1	0.004	0.66	0.0	0.05	14.73	0.00	2.315	6.52	3.02	5.0	95.0	0.0	0.42	0.95	0.79	0.79	3.04	8388	1113	6	0	2	1	0	logfile
✔	7QJZ	14027	2025-06-04	2021-12-17	3.4	3.37	3.42	3.5	0.011	2.09	0.0	0.10	13.72	0.01	2.490	0.44	0.00	5.3	94.4	0.2	-3.28	0.40	0.74	4.32	3.4	0.004	0.80	0.0	0.05	14.98	0.00	2.506	6.10	2.31	8.3	91.7	0.0	-2.97	2.37	0.38	0.77	4.62	3378	444	6	0	0	0	0	logfile
✔	7QK2	14029	2025-06-04	2021-12-17	2.61	2.61	2.36	2.7	0.011	1.86	10.0	0.11	10.81	0.01	2.499	0.15	0.00	4.1	95.9	0.0	-1.51	0.37	0.86	6.04	2.8	0.004	0.67	0.0	0.05	17.20	0.00	2.615	3.63	4.84	2.7	97.3	0.0	-1.86	1.30	0.37	0.87	5.61	3246	426	6	0	0	0	0	logfile
✔	7QKF	14040	2025-06-04	2021-12-17	2.83	2.46	2.70	2.8	0.012	2.23	2.0	0.21	13.42	0.01	2.598	0.26	0.00	8.4	91.6	0.0	-2.72	0.40	0.79	6.57	2.8	0.004	1.06	0.0	0.25	16.86	0.01	2.616	5.03	2.31	4.2	95.8	0.0	-3.47	1.40	0.39	0.86	5.67	3783	249	6	0	0	0	1926	logfile
✔	7QJX	14025	2025-06-12	2021-12-17	2.99	3.05	2.99	2.8	0.014	2.56	5.0	0.24	13.83	0.02	2.532	0.29	0.00	1.7	98.2	0.1	-2.52	0.35	0.70	3.48	2.8	0.005	1.23	0.0	0.31	16.37	0.01	2.382	3.18	2.44	7.1	92.9	0.0	-3.85	2.45	0.37	0.78	3.45	13860	900	12	0	0	0	7056	logfile
✔	7QJW	14024	2025-06-06	2021-12-17	2.81	2.81	1.86	2.9	0.012	2.09	0.0	0.10	11.96	0.01	2.556	0.00	0.00	2.3	96.3	1.4	-1.19	0.34	0.72	5.41	2.8	0.003	0.62	0.0	0.05	15.44	0.01	2.530	2.99	1.01	3.2	96.8	0.0	-1.72	1.48	0.39	0.78	5.58	7032	450	6	0	0	0	3588	logfile
✘	7T92	25750	2025-06-18	2021-12-17	3.1	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	18777	1159	8	0	25	0	9156	logfile
✔	7WBL	32405	2025-06-10	2021-12-17	3.4	3.46	—	3.5	0.004	0.61	0.0	0.04	15.43	0.00	2.158	6.95	0.72	3.6	96.1	0.4	0.52	0.67	0.77	2.33	3.5	0.002	0.55	0.0	0.04	16.27	0.00	2.409	4.26	1.44	2.8	97.1	0.1	1.13	0.31	0.67	0.79	1.49	6484	791	3	0	5	0	0	logfile
✔	7QKi	14043	2025-06-06	2021-12-17	3.13	3.29	3.03	25.0	0.011	1.99	3.0	0.10	9.18	0.01	2.508	0.00	0.00	10.1	89.9	0.0	-1.50	0.41	0.79	6.28	3.3	0.002	0.56	0.0	0.05	11.84	0.00	2.576	1.98	0.00	3.4	96.6	0.0	-1.84	0.68	0.39	0.80	4.61	7074	456	6	0	0	0	3606	logfile
✔	7WBU	32406	2025-06-11	2021-12-17	3.42	3.70	—	3.6	0.003	0.59	1.0	0.04	15.37	0.01	2.145	7.00	0.37	2.2	97.8	0.0	0.89	0.67	0.73	1.75	3.6	0.002	0.61	0.0	0.04	16.81	0.00	2.417	7.07	1.83	2.3	97.7	0.0	0.92	0.50	0.69	0.77	1.70	7170	898	2	0	1	0	0	logfile
✔	7QKJ	14044	2025-06-06	2021-12-17	3.26	3.08	3.11	3.2	0.012	2.04	12.0	0.16	11.59	0.01	2.510	0.21	0.00	9.9	90.1	0.0	-2.24	0.35	0.71	3.92	3.2	0.005	0.80	0.0	0.05	15.82	0.00	2.460	7.05	3.54	8.0	92.0	0.0	-2.83	1.02	0.36	0.85	2.57	6888	900	12	0	0	0	0	logfile
✔	7QK5	14038	2025-06-09	2021-12-17	1.92	1.67	1.82	2.2	0.011	1.89	4.0	0.10	10.96	0.01	2.401	0.10	0.00	4.5	95.5	0.0	-1.58	0.32	0.78	6.85	2.2	0.004	0.64	0.0	0.05	17.87	0.01	2.576	2.48	2.91	4.2	95.8	0.0	-1.94	1.63	0.36	0.82	7.12	10485	666	18	0	36	0	5337	logfile
✔	7QJY	14026	2025-06-04	2021-12-17	3.14	2.93	3.08	3.1	0.011	1.87	0.0	0.09	12.32	0.01	2.519	0.00	0.25	5.7	94.3	0.0	-2.50	0.38	0.82	5.27	3.1	0.003	0.68	0.0	0.05	17.13	0.00	2.434	4.41	1.52	1.8	98.2	0.0	-2.17	2.59	0.35	0.82	3.83	3444	450	6	0	0	0	0	logfile
✔	7QKL	14046	2025-06-04	2021-12-17	2.07	2.04	1.97	2.0	0.011	2.37	0.0	0.25	12.79	0.01	2.537	0.14	0.00	3.6	96.4	0.0	-1.75	0.40	0.83	7.75	2.0	0.003	0.61	0.0	0.05	16.96	0.00	2.620	2.97	0.25	2.7	97.3	0.0	-1.30	2.05	0.44	0.91	7.99	3468	456	6	0	0	0	0	logfile

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