Table showing results for June 2025

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7QJV	14023	2025-06-12	2021-12-17	3.29	3.75	2.41	42.0	0.012	2.13	7.0	0.11	11.77	0.01	2.497	0.72	0.13	9.5	90.5	0.0	-2.07	0.44	0.77	2.75	42.0	0.003	0.55	0.0	0.05	12.70	0.00	2.504	2.02	0.00	3.3	96.7	0.0	-1.92	0.53	0.44	0.78	3.62	13860	900	12	0	0	0	7056	logfile
✔	7QK3	14030	2025-06-04	2021-12-17	2.44	2.73	2.35	2.7	0.010	2.07	0.0	0.11	12.55	0.01	2.519	0.00	0.00	3.4	96.6	0.0	-3.04	0.38	0.77	5.65	2.7	0.003	0.71	0.0	0.05	16.63	0.00	2.543	2.55	0.00	2.8	97.2	0.0	-2.63	2.35	0.39	0.81	4.61	2742	183	3	0	0	0	1407	logfile
✔	7T8X	25748	2025-06-11	2021-12-17	3.21	3.47	—	3.5	0.004	0.72	0.0	0.05	12.83	0.00	2.063	7.65	0.00	3.8	96.2	0.0	0.02	0.69	0.83	3.18	3.5	0.003	0.62	0.0	0.04	14.70	0.00	2.439	5.52	1.89	3.9	96.1	0.0	0.35	0.36	0.70	0.87	2.40	8555	1126	6	0	1	0	0	logfile
✔	7QJZ	14027	2025-06-04	2021-12-17	3.4	3.37	3.42	3.5	0.011	2.09	0.0	0.10	13.72	0.01	2.490	0.44	0.00	5.3	94.4	0.2	-3.28	0.40	0.74	4.32	3.4	0.004	0.80	0.0	0.05	14.98	0.00	2.506	6.10	2.31	8.3	91.7	0.0	-2.97	2.37	0.38	0.77	4.62	3378	444	6	0	0	0	0	logfile
✔	7QK6	14039	2025-06-04	2021-12-17	2.27	2.34	2.13	2.3	0.011	1.84	0.0	0.09	9.70	0.01	2.520	0.00	0.00	6.4	93.6	0.0	-1.99	0.37	0.79	7.78	2.3	0.002	0.60	0.0	0.05	15.59	0.00	2.499	1.62	0.69	5.8	94.2	0.0	-2.05	1.48	0.38	0.85	6.46	2469	162	3	0	0	0	1278	logfile
✔	7QJX	14025	2025-06-12	2021-12-17	2.99	3.05	2.99	2.8	0.014	2.56	5.0	0.24	13.83	0.02	2.532	0.29	0.00	1.7	98.2	0.1	-2.52	0.35	0.70	3.48	2.8	0.005	1.23	0.0	0.31	16.37	0.01	2.382	3.18	2.44	7.1	92.9	0.0	-3.85	2.45	0.37	0.78	3.45	13860	900	12	0	0	0	7056	logfile
✔	7QJW	14024	2025-06-06	2021-12-17	2.81	2.81	1.86	2.9	0.012	2.09	0.0	0.10	11.96	0.01	2.556	0.00	0.00	2.3	96.3	1.4	-1.19	0.34	0.72	5.41	2.8	0.003	0.62	0.0	0.05	15.44	0.01	2.530	2.99	1.01	3.2	96.8	0.0	-1.72	1.48	0.39	0.78	5.58	7032	450	6	0	0	0	3588	logfile
✔	7WBU	32406	2025-06-11	2021-12-17	3.42	3.70	—	3.6	0.003	0.59	1.0	0.04	15.37	0.01	2.145	7.00	0.37	2.2	97.8	0.0	0.89	0.67	0.73	1.75	3.6	0.002	0.61	0.0	0.04	16.81	0.00	2.417	7.07	1.83	2.3	97.7	0.0	0.92	0.50	0.69	0.77	1.70	7170	898	2	0	1	0	0	logfile
✔	7WBL	32405	2025-06-10	2021-12-17	3.4	3.46	—	3.5	0.004	0.61	0.0	0.04	15.43	0.00	2.158	6.95	0.72	3.6	96.1	0.4	0.52	0.67	0.77	2.33	3.5	0.002	0.55	0.0	0.04	16.27	0.00	2.409	4.26	1.44	2.8	97.1	0.1	1.13	0.31	0.67	0.79	1.49	6484	791	3	0	5	0	0	logfile
✔	7WBJ	32401	2025-06-07	2021-12-16	3.42	3.69	—	3.7	0.004	0.61	0.0	0.05	14.59	0.00	1.264	12.09	0.21	4.9	95.1	0.0	-1.06	0.65	0.74	2.02	3.7	0.003	0.56	0.0	0.04	16.42	0.00	2.484	8.83	2.88	3.9	96.1	0.0	-0.39	0.37	0.64	0.76	1.63	8989	1146	6	0	0	0	0	logfile
✔	7T8C	25744	2025-06-25	2021-12-16	4.5	3.21	4.52	4.6	0.001	0.42	0.0	0.04	7.59	0.00	2.347	5.08	0.41	3.6	96.4	0.0	0.76	0.63	0.54	—	4.2	0.002	0.62	0.0	0.04	11.13	0.00	2.424	7.78	0.00	4.5	95.5	0.0	0.33	1.07	0.66	0.62	—	28952	3626	7	0	0	0	0	logfile
✔	7T8B	25743	2025-06-28	2021-12-16	3.8	2.77	3.90	2.3	0.002	0.47	0.0	0.04	8.77	0.00	2.205	7.91	1.40	4.3	95.6	0.2	-0.32	0.73	0.72	2.28	2.9	0.003	0.70	0.0	0.04	15.20	0.00	2.287	12.46	2.85	5.2	94.8	0.0	-0.18	1.30	0.73	0.73	1.73	33025	4131	8	0	0	0	0	logfile
✔	7WBH	32398	2025-06-25	2021-12-16	3.7	3.43	—	3.3	0.006	1.17	1.0	0.07	15.48	0.01	2.310	3.14	0.06	5.3	94.6	0.0	-2.71	0.71	0.77	2.28	3.4	0.003	0.69	0.0	0.05	15.00	0.00	2.449	7.75	1.47	4.4	95.5	0.0	-0.94	0.57	0.72	0.78	2.19	29187	3681	26	0	55	0	0	logfile
✔	7WBB	32396	2025-06-28	2021-12-16	3.6	3.64	—	3.5	0.002	0.55	2.0	0.04	14.72	0.00	2.206	9.66	0.11	5.0	94.6	0.3	0.91	0.80	0.74	0.62	3.5	0.005	0.66	0.0	0.04	15.64	0.00	2.464	9.60	1.87	6.3	93.3	0.4	0.41	1.58	0.83	0.80	1.03	33634	4329	13	0	33	0	0	logfile
✔	7WB1	32392	2025-06-10	2021-12-15	3.7	3.09	—	3.0	0.003	0.59	0.0	0.04	22.13	0.00	2.046	11.12	0.00	4.7	95.2	0.1	0.55	0.83	0.75	0.94	3.0	0.003	0.59	0.0	0.04	22.69	0.00	2.101	9.25	1.43	4.6	95.4	0.0	0.69	1.03	0.83	0.76	1.28	11524	960	4	178	0	0	0	logfile
✔	7WAY	32389	2025-06-10	2021-12-15	2.9	3.11	—	2.9	0.004	0.54	0.0	0.04	19.59	0.00	2.172	5.59	0.00	2.8	97.2	0.0	1.31	0.87	0.85	2.73	2.9	0.004	0.57	0.0	0.04	20.12	0.00	2.506	4.13	0.60	2.3	97.7	0.0	1.69	0.34	0.89	0.88	2.31	11453	960	4	175	0	0	0	logfile
✔	7WAZ	32390	2025-06-10	2021-12-15	3.4	3.85	—	3.4	0.002	0.59	0.0	0.04	21.36	0.00	2.160	11.49	5.53	4.0	95.8	0.2	0.74	0.67	0.58	0.88	3.4	0.004	0.74	0.0	0.04	22.23	0.00	2.425	18.13	2.64	7.0	92.8	0.2	-0.37	0.96	0.69	0.63	0.81	11034	952	4	157	0	0	0	logfile
✔	7WB5	32395	2025-06-04	2021-12-15	3.7	3.89	—	3.8	0.011	1.42	0.0	0.09	21.95	0.02	2.188	18.30	14.00	18.2	79.6	2.2	-4.90	0.61	0.78	2.04	3.8	0.006	0.90	0.0	0.05	16.83	0.01	2.353	17.19	5.14	11.2	88.8	0.0	-3.60	1.63	0.62	0.78	2.40	3256	408	4	0	3	0	0	logfile
✘	7WB0	32391	2025-06-09	2021-12-15	3.2	3.52	—	3.3	0.003	0.58	0.0	0.03	21.37	0.00	2.136	7.20	0.00	3.3	96.6	0.1	0.54	0.70	0.73	1.78	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	10096	797	4	175	0	0	0	logfile
✔	7WAC	32381	2025-06-18	2021-12-14	2.91	3.68	2.87	3.4	0.002	0.51	0.0	0.04	13.36	0.00	2.221	5.30	0.00	2.9	97.1	0.0	0.53	0.85	0.87	3.21	3.3	0.003	0.51	0.0	0.04	14.80	0.00	2.630	5.91	0.55	3.0	97.0	0.0	0.86	0.37	0.83	0.88	3.32	22016	2892	4	0	0	0	0	logfile

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