Table showing results for June 2025

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

Table content is loading...

Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7T6U	25728	2025-06-08	2021-12-14	2.9	2.23	—	1.9	0.006	1.00	4.0	0.06	12.93	0.01	2.315	3.49	0.31	2.0	98.0	0.0	-3.84	0.76	0.78	4.04	1.9	0.003	0.64	0.0	0.04	15.99	0.00	2.546	6.92	3.16	2.2	97.8	0.0	0.27	1.20	0.79	0.81	3.08	9033	1152	7	0	2	0	0	logfile
✔	7WAD	32382	2025-06-19	2021-12-14	2.96	3.51	2.92	3.3	0.003	0.58	0.0	0.05	13.99	0.00	1.992	6.02	0.00	3.3	96.7	0.0	-0.02	0.79	0.88	3.23	3.3	0.004	0.56	0.0	0.05	15.70	0.00	1.899	5.33	1.32	2.7	97.3	0.0	0.30	0.95	0.79	0.89	3.37	22268	2892	8	0	12	0	0	logfile
✔	7T6S	25726	2025-06-07	2021-12-14	3.0	2.75	—	3.0	0.013	1.29	3.0	0.10	13.45	0.01	2.223	9.06	0.10	2.2	97.8	0.0	-0.64	0.60	0.81	3.66	3.0	0.003	0.60	0.0	0.04	15.78	0.00	2.530	7.43	1.86	2.6	97.4	0.0	-0.11	1.16	0.61	0.83	3.41	8906	1136	6	0	1	0	0	logfile
✔	7T74	25733	2025-06-18	2021-12-14	3.35	3.65	3.39	3.5	0.023	1.80	3.0	0.16	12.71	0.01	2.337	0.77	0.64	2.5	97.0	0.6	0.71	0.79	0.86	3.50	3.5	0.004	0.69	0.0	0.04	13.18	0.00	2.410	5.59	1.77	4.0	95.8	0.2	0.35	1.22	0.79	0.86	2.94	21199	2552	41	0	98	0	0	logfile
✘	7T6P	25723	2025-06-17	2021-12-14	2.8	3.33	—	3.3	0.005	1.13	0.0	0.06	14.54	0.01	2.310	3.72	0.00	4.0	96.0	0.0	-3.37	0.59	0.76	2.86	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	19412	2424	4	0	0	0	0	logfile
✔	7WAH	32385	2025-06-12	2021-12-14	2.45	2.65	—	2.8	0.002	0.51	0.0	0.04	14.18	0.00	2.239	7.07	0.55	1.7	98.3	0.0	0.28	0.64	0.80	3.72	2.8	0.002	0.55	0.0	0.04	17.04	0.00	2.477	5.86	1.64	2.1	97.9	0.0	0.56	0.49	0.63	0.80	3.34	13217	1473	4	62	4	0	0	logfile
✔	7T6o	25721	2025-06-17	2021-12-14	2.6	2.80	—	2.9	0.004	0.79	0.0	0.05	14.06	0.01	2.302	2.54	0.00	1.3	98.7	0.0	-1.56	0.67	0.84	3.82	2.9	0.003	0.51	0.0	0.04	16.08	0.00	2.589	5.11	1.34	1.0	99.0	0.0	1.63	0.90	0.68	0.87	3.21	19412	2424	4	0	0	0	0	logfile
✔	7WAF	32384	2025-06-21	2021-12-14	2.52	2.97	2.48	2.8	0.003	0.58	0.0	0.05	13.88	0.00	1.979	7.48	0.11	3.7	96.3	0.1	0.15	0.80	0.87	3.60	2.8	0.003	0.55	0.0	0.05	15.47	0.00	1.882	5.79	1.80	3.6	96.3	0.1	0.56	0.92	0.80	0.90	3.30	24842	3226	16	0	20	0	0	logfile
✔	7T75	25734	2025-06-17	2021-12-14	2.7	2.93	2.74	3.0	0.022	1.85	12.0	0.14	11.79	0.01	2.271	1.14	0.90	2.5	96.7	0.8	0.58	0.76	0.83	4.56	2.9	0.002	0.61	0.0	0.04	13.97	0.00	2.526	4.41	1.64	3.5	96.5	0.0	0.59	0.62	0.71	0.82	4.14	19227	2316	36	0	87	0	0	logfile
✔	7T6J	25716	2025-06-16	2021-12-14	3.2	3.40	—	3.4	0.005	1.09	2.0	0.06	14.92	0.01	2.340	3.85	0.05	3.2	96.7	0.2	-3.33	0.70	0.87	2.58	3.4	0.002	0.59	0.0	0.04	16.56	0.00	2.528	6.14	0.91	2.6	97.4	0.0	1.39	0.93	0.72	0.90	2.18	19412	2424	4	0	0	0	0	logfile
✔	7T6N	25720	2025-06-16	2021-12-14	2.9	3.20	—	3.2	0.007	1.08	4.0	0.06	13.71	0.01	2.335	3.95	0.19	3.2	96.8	0.0	-3.03	0.63	0.78	3.52	3.2	0.004	0.62	0.0	0.04	16.62	0.00	2.480	7.32	2.24	2.7	97.3	0.0	1.36	0.46	0.69	0.84	2.87	19412	2424	4	0	0	0	0	logfile
✔	7WAC	32381	2025-06-18	2021-12-14	2.91	3.68	2.87	3.4	0.002	0.51	0.0	0.04	13.36	0.00	2.221	5.30	0.00	2.9	97.1	0.0	0.53	0.85	0.87	3.21	3.3	0.003	0.51	0.0	0.04	14.80	0.00	2.630	5.91	0.55	3.0	97.0	0.0	0.86	0.37	0.83	0.88	3.32	22016	2892	4	0	0	0	0	logfile
✔	7T6T	25727	2025-06-06	2021-12-14	3.2	2.74	—	3.3	0.011	1.55	0.0	0.10	13.22	0.01	2.223	13.63	1.16	2.0	98.0	0.0	0.19	0.68	0.80	2.07	3.3	0.003	0.66	0.0	0.04	16.69	0.00	2.528	11.48	3.23	1.6	98.4	0.0	0.06	0.68	0.66	0.81	2.24	7164	908	6	0	2	0	0	logfile
✔	7QiC	13987	2025-06-05	2021-12-14	4.1	4.27	3.98	4.2	0.003	0.65	0.0	0.04	12.83	0.00	2.221	13.06	0.20	7.7	92.3	0.0	-0.78	0.64	0.79	—	4.2	0.003	0.67	0.0	0.04	12.82	0.01	2.299	12.55	0.20	8.5	91.5	0.0	-0.05	1.37	0.64	0.79	—	4841	639	4	0	1	0	0	logfile
✔	7T76	25735	2025-06-15	2021-12-14	4.43	4.68	4.39	4.5	0.024	2.01	2.0	0.14	12.89	0.02	0.530	1.29	0.77	3.4	96.4	0.3	0.31	0.81	0.80	—	4.5	0.007	0.93	0.0	0.05	11.95	0.00	0.955	13.18	0.00	5.9	94.1	0.0	-0.91	1.88	0.82	0.82	—	16587	1934	42	0	104	0	0	logfile
✘	7T6X	25730	2025-06-08	2021-12-14	3.83	4.14	3.83	4.0	0.022	2.01	0.0	0.13	15.96	0.02	1.505	3.89	0.00	3.8	96.1	0.1	-0.16	0.77	0.82	2.77	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	9217	1140	19	0	37	0	0	logfile
✔	7WAE	32383	2025-06-21	2021-12-14	2.64	3.01	2.60	2.9	0.003	0.56	0.0	0.05	13.86	0.00	1.987	7.98	0.27	3.2	96.6	0.2	0.26	0.79	0.87	2.86	2.9	0.003	0.56	0.0	0.04	15.73	0.00	1.918	5.97	1.49	3.6	96.4	0.0	0.30	0.40	0.79	0.89	3.09	24850	3227	16	0	19	0	0	logfile
✔	7T6L	25718	2025-06-17	2021-12-14	3.7	4.01	—	3.9	0.007	1.18	0.0	0.07	15.11	0.01	2.245	5.37	0.00	4.8	95.2	0.0	-4.03	0.68	0.82	1.57	3.9	0.003	0.70	0.0	0.04	17.06	0.00	2.531	9.24	1.91	2.6	97.4	0.0	0.28	0.95	0.68	0.83	1.40	19412	2424	4	0	0	0	0	logfile
✔	7T6R	25725	2025-06-16	2021-12-14	3.0	3.20	—	3.2	0.005	1.07	0.0	0.06	14.25	0.01	2.335	3.47	0.00	4.7	95.3	0.0	-3.26	0.68	0.84	3.26	3.2	0.003	0.58	0.0	0.04	16.62	0.00	2.463	6.67	1.43	3.7	96.3	0.0	0.67	0.43	0.70	0.88	2.36	19412	2424	4	0	0	0	0	logfile
✔	7T77	25736	2025-06-15	2021-12-14	4.75	4.98	4.59	4.8	0.023	1.87	4.0	0.15	13.67	0.02	2.295	1.06	0.87	2.7	97.0	0.3	0.38	0.80	0.77	—	4.8	0.004	0.76	0.0	0.05	11.84	0.01	2.403	11.54	0.00	4.8	95.2	0.0	-0.46	1.53	0.82	0.81	—	16832	1956	42	0	105	0	0	logfile

• ← previous
• Page 455 of 700
• next →