Table showing results for June 2025

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7WAE	32383	2025-06-21	2021-12-14	2.64	3.01	2.60	2.9	0.003	0.56	0.0	0.05	13.86	0.00	1.987	7.98	0.27	3.2	96.6	0.2	0.26	0.79	0.87	2.86	2.9	0.003	0.56	0.0	0.04	15.73	0.00	1.918	5.97	1.49	3.6	96.4	0.0	0.30	0.40	0.79	0.89	3.09	24850	3227	16	0	19	0	0	logfile
✔	7QiC	13987	2025-06-05	2021-12-14	4.1	4.27	3.98	4.2	0.003	0.65	0.0	0.04	12.83	0.00	2.221	13.06	0.20	7.7	92.3	0.0	-0.78	0.64	0.79	—	4.2	0.003	0.67	0.0	0.04	12.82	0.01	2.299	12.55	0.20	8.5	91.5	0.0	-0.05	1.37	0.64	0.79	—	4841	639	4	0	1	0	0	logfile
✔	7T6S	25726	2025-06-07	2021-12-14	3.0	2.75	—	3.0	0.013	1.29	3.0	0.10	13.45	0.01	2.223	9.06	0.10	2.2	97.8	0.0	-0.64	0.60	0.81	3.66	3.0	0.003	0.60	0.0	0.04	15.78	0.00	2.530	7.43	1.86	2.6	97.4	0.0	-0.11	1.16	0.61	0.83	3.41	8906	1136	6	0	1	0	0	logfile
✔	7T6U	25728	2025-06-08	2021-12-14	2.9	2.23	—	1.9	0.006	1.00	4.0	0.06	12.93	0.01	2.315	3.49	0.31	2.0	98.0	0.0	-3.84	0.76	0.78	4.04	1.9	0.003	0.64	0.0	0.04	15.99	0.00	2.546	6.92	3.16	2.2	97.8	0.0	0.27	1.20	0.79	0.81	3.08	9033	1152	7	0	2	0	0	logfile
✔	7T67	25711	2025-06-21	2021-12-13	3.0	4.53	3.13	3.0	0.004	0.80	0.0	0.05	13.33	0.01	2.074	5.55	0.00	2.8	97.2	0.0	-0.16	0.85	0.80	2.60	3.0	0.003	0.66	0.0	0.04	14.49	0.00	2.476	7.15	0.89	3.3	96.7	0.0	0.20	1.05	0.88	0.86	2.32	24753	3075	9	0	51	0	0	logfile
✔	7T5P	25706	2025-06-12	2021-12-13	3.4	3.23	3.36	2.2	0.003	0.59	0.0	0.04	17.85	0.00	1.971	15.30	0.39	4.7	95.3	0.0	1.09	0.76	0.73	0.61	2.2	0.004	0.64	0.0	0.04	18.19	0.00	2.263	13.02	2.20	5.9	94.1	0.0	1.17	0.41	0.77	0.75	0.53	13597	822	2	0	0	0	6866	logfile
✔	7T5Q	25707	2025-06-19	2021-12-13	3.4	2.43	3.34	2.1	0.005	0.86	0.0	0.05	13.79	0.01	1.984	2.02	0.08	5.4	94.6	0.0	-1.49	0.75	0.76	2.01	2.1	0.007	0.74	0.0	0.05	16.16	0.01	1.831	8.56	2.70	7.2	92.8	0.0	-0.65	0.96	0.76	0.78	1.68	21671	2703	13	0	6	0	0	logfile
✔	7QHH	13972	2025-06-12	2021-12-12	3.6	3.51	3.48	3.6	0.014	1.83	0.0	0.09	13.09	0.01	2.546	3.81	0.19	0.3	99.6	0.1	-0.83	0.66	0.74	3.73	3.5	0.005	0.63	0.0	0.04	13.75	0.00	2.528	7.81	3.40	1.8	98.2	0.0	1.50	1.30	0.64	0.74	2.74	13626	1982	16	0	14	0	0	logfile
✔	7T5o	25699	2025-06-18	2021-12-12	3.39	3.68	—	3.5	0.007	1.39	6.0	0.08	13.25	0.01	2.295	3.59	0.00	5.1	94.9	0.0	-2.90	0.56	0.47	0.35	3.6	0.003	0.71	0.0	0.04	15.53	0.00	2.314	10.15	2.23	4.4	95.6	0.0	-1.36	0.61	0.66	0.60	0.33	21263	2758	5	0	0	0	0	logfile
✔	7T55	25695	2025-06-10	2021-12-11	4.1	4.86	4.15	4.3	0.004	0.71	0.0	0.04	13.63	0.00	1.743	14.08	0.24	2.9	97.0	0.1	0.26	0.75	0.76	—	4.3	0.004	0.64	0.0	0.04	13.33	0.00	1.889	11.21	0.00	3.0	97.0	0.0	1.53	1.27	0.79	0.85	—	11460	1464	6	0	4	0	0	logfile
✔	7WA1	32379	2025-06-06	2021-12-11	2.9	3.13	—	3.1	0.005	0.58	0.0	0.04	11.30	0.01	2.103	2.47	1.59	2.8	97.2	0.0	-3.55	0.68	0.82	3.80	3.1	0.003	0.53	0.0	0.04	15.47	0.00	2.455	5.25	2.75	2.5	97.5	0.0	0.48	1.44	0.66	0.83	3.49	6440	790	3	0	1	0	0	logfile
✔	7T54	25694	2025-06-07	2021-12-11	4.5	7.46	4.53	4.6	0.004	0.70	1.0	0.05	12.14	0.00	2.078	8.94	0.68	4.4	95.5	0.1	0.70	0.62	0.64	—	4.6	0.004	0.67	0.0	0.04	11.53	0.00	2.523	9.61	0.00	8.6	91.3	0.1	0.49	1.21	0.70	0.80	—	8552	1416	4	0	2	0	0	logfile
✔	7T56	25696	2025-06-10	2021-12-11	3.7	4.23	3.77	4.1	0.004	0.68	0.0	0.05	13.82	0.00	1.719	9.32	0.72	3.3	96.6	0.1	0.18	0.72	0.76	1.54	4.1	0.004	0.72	0.0	0.04	16.74	0.00	1.901	9.45	3.05	3.0	97.0	0.0	0.90	1.33	0.71	0.80	1.36	11460	1464	6	0	4	0	0	logfile
✔	7T57	25697	2025-06-10	2021-12-11	3.7	4.28	3.83	4.1	0.003	0.73	0.0	0.04	14.11	0.00	1.826	9.53	0.72	2.7	97.1	0.1	0.90	0.72	0.74	0.99	4.1	0.003	0.71	0.0	0.04	16.33	0.00	1.970	8.93	2.65	2.4	97.6	0.0	1.16	0.86	0.73	0.80	1.22	11460	1464	6	0	4	0	0	logfile
✔	7QHB	13969	2025-06-13	2021-12-11	3.5	3.17	3.39	3.4	0.018	1.05	2.0	0.07	17.10	0.01	2.026	12.72	0.55	9.1	90.9	0.0	-2.00	0.67	0.74	3.10	3.5	0.003	0.63	0.0	0.04	15.51	0.00	2.524	8.43	1.93	3.2	96.8	0.0	1.09	0.58	0.67	0.74	2.73	15052	1966	14	0	24	0	0	logfile
✔	7QHA	13968	2025-06-05	2021-12-11	2.97	4.06	2.98	3.8	0.003	0.59	0.0	0.04	12.23	0.00	2.268	6.68	0.00	2.7	97.3	0.0	1.85	0.69	0.86	2.37	3.7	0.003	0.81	0.0	0.04	15.51	0.00	2.266	7.05	2.81	2.7	97.3	0.0	2.01	0.93	0.69	0.86	2.29	5282	684	4	0	2	0	0	logfile
✔	7T4R	25686	2025-06-24	2021-12-10	3.3	2.34	—	3.1	0.004	0.65	0.0	0.04	13.15	0.01	2.123	8.83	0.00	3.8	96.2	0.0	-0.69	0.76	0.72	2.72	3.1	0.004	0.69	0.0	0.04	15.29	0.00	2.323	7.80	2.28	3.7	96.3	0.0	0.15	1.17	0.77	0.76	2.36	28717	3595	25	0	14	0	0	logfile
✔	7T4X	25691	2025-06-25	2021-12-10	2.8	3.07	2.82	3.1	0.006	0.93	0.0	0.05	13.01	0.01	2.392	0.82	1.52	1.4	98.6	0.0	-0.26	0.66	0.83	3.93	3.1	0.006	0.62	0.0	0.04	15.36	0.00	2.236	4.87	1.20	3.0	97.0	0.0	1.31	0.90	0.68	0.87	3.54	29234	1778	11	0	7	13	14614	logfile
✔	7T4Q	25685	2025-06-13	2021-12-10	2.9	3.12	—	3.0	0.003	0.62	0.0	0.04	12.89	0.01	2.184	5.12	0.00	3.9	96.1	0.0	-0.62	0.75	0.82	3.45	3.0	0.003	0.72	0.0	0.04	15.90	0.00	2.369	7.14	3.28	2.4	97.6	0.0	0.51	1.30	0.76	0.85	2.96	15473	1946	15	0	6	0	0	logfile
✔	7QH2	13960	2025-06-15	2021-12-10	2.43	3.08	—	2.8	0.008	1.01	0.0	0.06	16.28	0.01	1.674	6.99	2.88	3.3	96.4	0.2	-4.15	0.84	0.85	4.97	2.8	0.002	0.58	0.0	0.04	15.63	0.00	2.032	5.86	1.00	2.9	97.0	0.1	0.41	1.03	0.83	0.86	4.20	16808	2138	14	0	8	2	0	logfile

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