Table showing results for June 2025

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

Table content is loading...

Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7T4S	25687	2025-06-14	2021-12-10	3.1	2.40	—	2.7	0.004	0.65	0.0	0.04	13.12	0.01	2.204	7.59	0.00	3.1	96.9	0.0	-0.13	0.80	0.78	3.71	2.7	0.004	0.69	0.0	0.04	15.85	0.00	2.203	7.96	3.28	3.4	96.6	0.0	-0.03	0.42	0.82	0.81	2.75	16404	2045	14	0	10	0	0	logfile
✔	7QH2	13960	2025-06-15	2021-12-10	2.43	3.08	—	2.8	0.008	1.01	0.0	0.06	16.28	0.01	1.674	6.99	2.88	3.3	96.4	0.2	-4.15	0.84	0.85	4.97	2.8	0.002	0.58	0.0	0.04	15.63	0.00	2.032	5.86	1.00	2.9	97.0	0.1	0.41	1.03	0.83	0.86	4.20	16808	2138	14	0	8	2	0	logfile
✔	7T4X	25691	2025-06-25	2021-12-10	2.8	3.07	2.82	3.1	0.006	0.93	0.0	0.05	13.01	0.01	2.392	0.82	1.52	1.4	98.6	0.0	-0.26	0.66	0.83	3.93	3.1	0.006	0.62	0.0	0.04	15.36	0.00	2.236	4.87	1.20	3.0	97.0	0.0	1.31	0.90	0.68	0.87	3.54	29234	1778	11	0	7	13	14614	logfile
✔	7T4o	25683	2025-06-29	2021-12-10	3.65	3.25	—	3.5	0.007	0.88	0.0	0.05	16.84	0.00	1.776	16.75	1.85	5.4	94.4	0.3	0.05	0.47	0.70	1.84	3.3	0.005	0.71	0.0	0.05	17.79	0.01	1.994	10.60	3.69	4.7	95.1	0.1	-0.11	1.34	0.63	0.81	2.21	19142	2310	18	0	26	0	0	logfile
✔	7T4N	25681	2025-06-05	2021-12-10	2.35	2.66	2.38	2.5	0.002	0.42	0.0	0.04	16.22	0.00	2.207	4.39	1.25	1.0	99.0	0.0	0.87	0.63	0.85	3.82	2.5	0.003	0.50	0.0	0.04	16.52	0.00	2.549	3.78	1.39	1.4	98.6	0.0	1.57	0.21	0.66	0.87	3.65	6476	803	2	0	0	0	0	logfile
✔	7W9V	32373	2025-06-16	2021-12-10	3.95	4.17	—	4.0	0.008	0.87	0.0	0.05	25.02	0.01	2.021	8.63	0.44	2.0	98.0	0.0	-0.79	0.79	0.65	0.99	4.0	0.003	0.50	0.0	0.03	25.32	0.00	2.327	34.29	0.98	2.4	97.6	0.0	2.83	1.35	0.87	0.84	1.07	18546	1302	11	290	0	0	2136	logfile
✔	7W9B	32363	2025-06-25	2021-12-09	3.4	3.64	—	3.6	0.004	0.58	0.0	0.04	12.34	0.00	2.057	1.77	0.03	2.8	97.2	0.0	-3.40	0.66	0.69	1.74	3.6	0.003	0.64	0.0	0.04	16.20	0.00	2.325	7.01	1.48	2.9	97.1	0.0	-0.11	0.99	0.68	0.74	1.62	29737	3777	4	0	0	0	0	logfile
✔	7W92	32359	2025-06-21	2021-12-09	3.1	2.79	—	3.3	0.003	0.67	0.0	0.05	13.05	0.01	2.306	2.89	0.11	3.7	96.3	0.0	-4.34	0.80	0.76	2.05	3.3	0.003	0.67	0.0	0.04	15.49	0.00	2.405	6.42	1.93	4.4	95.6	0.0	-1.19	1.44	0.79	0.80	1.94	25071	3206	3	0	0	0	0	logfile
✔	7T4F	25675	2025-06-06	2021-12-09	2.7	3.13	2.69	3.1	0.004	0.70	0.0	0.05	14.61	0.00	2.228	4.75	2.44	0.3	99.7	0.0	0.54	0.33	0.71	4.04	3.1	0.002	0.47	0.0	0.04	15.32	0.00	2.633	3.21	1.03	0.4	99.6	0.0	0.33	0.28	0.34	0.80	4.38	7224	980	4	0	0	0	0	logfile
✔	7W94	32360	2025-06-21	2021-12-09	3.4	3.02	—	3.6	0.003	0.67	0.0	0.05	13.57	0.01	2.288	3.37	0.14	3.4	96.6	0.0	-4.24	0.78	0.74	1.49	3.5	0.004	0.73	0.0	0.05	16.29	0.00	2.458	9.02	2.57	5.9	94.1	0.0	-1.62	0.71	0.80	0.79	1.40	25082	3206	3	0	0	0	0	logfile
✔	7W9C	32364	2025-06-25	2021-12-09	3.2	3.43	—	3.5	0.004	0.61	0.0	0.04	12.69	0.00	2.079	1.76	0.00	2.8	97.2	0.0	-3.72	0.64	0.69	2.04	3.4	0.004	0.74	2.0	0.05	16.11	0.00	2.124	8.39	2.48	3.6	96.4	0.0	-0.46	1.44	0.67	0.75	1.84	29737	3777	4	0	0	0	0	logfile
✔	7W99	32362	2025-06-25	2021-12-09	3.4	3.65	—	3.6	0.004	0.59	0.0	0.04	12.55	0.00	2.076	1.67	0.12	3.1	96.9	0.0	-3.42	0.65	0.69	1.63	3.6	0.003	0.64	0.0	0.04	15.92	0.00	2.268	7.86	1.73	3.1	96.9	0.0	-0.44	1.00	0.67	0.73	1.57	29737	3777	4	0	0	0	0	logfile
✔	7W9i	32367	2025-06-05	2021-12-09	3.4	3.65	—	3.7	0.005	0.72	0.0	0.05	14.90	0.01	2.289	3.91	0.00	4.8	95.2	0.0	-5.48	0.68	0.80	2.34	3.7	0.003	0.60	0.0	0.04	16.62	0.00	2.595	5.27	1.73	2.9	97.1	0.0	-1.14	1.19	0.66	0.81	2.15	6412	791	2	0	0	0	0	logfile
✔	7T4G	25676	2025-06-20	2021-12-09	3.7	4.03	3.73	3.9	0.023	1.88	0.0	0.15	14.43	0.01	2.363	1.24	0.26	2.9	95.8	1.3	-0.17	0.80	0.82	1.87	3.9	0.006	0.85	0.0	0.05	13.14	0.00	2.381	10.03	1.99	7.1	92.5	0.4	-1.18	1.41	0.80	0.83	1.96	23045	2619	57	0	175	0	0	logfile
✔	7T4E	25673	2025-06-25	2021-12-09	2.87	2.29	—	2.1	0.002	0.53	0.0	0.05	12.92	0.01	2.117	10.78	0.00	2.9	97.1	0.0	-0.63	0.77	0.79	4.42	2.2	0.004	0.64	0.0	0.05	16.87	0.01	2.501	10.10	1.62	4.0	96.0	0.0	-0.95	0.42	0.79	0.84	3.82	19376	2456	8	0	0	0	0	logfile
✔	7W9F	32366	2025-06-05	2021-12-09	3.6	2.59	—	2.2	0.003	0.73	0.0	0.05	13.99	0.01	2.302	3.37	0.00	3.7	96.3	0.0	-3.66	0.73	0.72	1.95	3.2	0.003	0.65	0.0	0.04	15.81	0.00	2.519	6.74	2.20	2.6	97.4	0.0	-1.31	0.52	0.74	0.73	1.78	4856	625	3	0	0	0	0	logfile
✔	7W9E	32365	2025-06-24	2021-12-09	3.1	2.99	—	2.8	0.004	0.58	0.0	0.04	12.89	0.00	2.028	3.16	0.00	3.9	96.1	0.0	-3.93	0.76	0.71	2.09	2.8	0.004	0.70	1.0	0.05	15.39	0.00	2.438	6.18	1.33	3.3	96.7	0.0	-0.51	0.88	0.79	0.78	1.81	28181	3611	5	0	0	0	0	logfile
✔	7W98	32361	2025-06-25	2021-12-09	3.6	3.82	—	3.7	0.003	0.57	0.0	0.04	12.49	0.00	2.038	1.60	0.03	2.6	97.4	0.0	-3.30	0.69	0.69	1.35	3.7	0.004	0.70	0.0	0.04	15.97	0.00	2.399	10.81	2.57	4.6	95.4	0.0	-0.46	1.87	0.71	0.73	1.32	29737	3777	4	0	0	0	0	logfile
✔	7T3i	25659	2025-06-23	2021-12-08	4.3	4.36	—	4.3	0.003	0.59	0.0	0.04	13.81	0.00	2.101	11.21	0.07	5.7	94.1	0.2	0.58	0.80	0.82	—	4.3	0.004	0.67	0.0	0.04	13.94	0.00	2.446	11.26	0.00	7.0	92.8	0.2	0.50	1.13	0.80	0.83	—	26799	3437	12	0	36	0	0	logfile
✔	7T3N	25665	2025-06-04	2021-12-08	3.0	3.31	—	3.3	0.012	0.82	0.0	0.06	14.51	0.01	2.131	5.13	0.00	4.7	95.3	0.0	-3.24	0.51	0.85	3.81	3.2	0.003	0.67	0.0	0.04	14.86	0.00	2.573	7.48	1.16	2.9	97.1	0.0	0.07	0.40	0.48	0.84	2.96	3512	452	2	0	2	0	0	logfile

• ← previous
• Page 457 of 700
• next →