Table showing results for June 2025

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

Table content is loading...

Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7T3o	25666	2025-06-04	2021-12-08	3.3	3.72	—	3.7	0.006	0.68	0.0	0.05	13.49	0.00	2.284	3.91	0.29	7.1	92.9	0.0	-3.36	0.49	0.86	1.84	3.7	0.004	0.65	0.0	0.04	15.98	0.00	2.601	4.06	3.23	4.7	95.3	0.0	-0.18	0.47	0.49	0.86	1.68	3410	452	1	0	0	0	0	logfile
✔	7T3J	25660	2025-06-23	2021-12-08	3.2	3.05	—	3.2	0.004	0.74	0.0	0.05	17.15	0.01	2.241	6.11	0.58	4.9	95.1	0.0	-1.91	0.87	0.81	1.94	3.2	0.003	0.57	0.0	0.04	17.40	0.00	2.451	9.81	2.15	5.4	94.6	0.0	-0.02	0.32	0.88	0.83	2.00	27076	3349	12	61	0	0	0	logfile
✔	7T3N	25665	2025-06-04	2021-12-08	3.0	3.31	—	3.3	0.012	0.82	0.0	0.06	14.51	0.01	2.131	5.13	0.00	4.7	95.3	0.0	-3.24	0.51	0.85	3.81	3.2	0.003	0.67	0.0	0.04	14.86	0.00	2.573	7.48	1.16	2.9	97.1	0.0	0.07	0.40	0.48	0.84	2.96	3512	452	2	0	2	0	0	logfile
✔	7W8S	32358	2025-06-06	2021-12-08	2.85	3.08	—	3.1	0.005	0.60	0.0	0.04	11.07	0.01	2.102	0.87	3.48	3.4	96.6	0.0	-4.03	0.67	0.82	4.11	3.1	0.002	0.50	0.0	0.04	14.78	0.00	2.634	1.59	1.74	2.0	98.0	0.0	-0.76	0.46	0.65	0.82	2.93	6455	788	4	0	3	0	0	logfile
✔	7W84	32351	2025-06-12	2021-12-07	3.4	2.66	—	3.4	0.004	0.74	1.0	0.05	16.68	0.00	1.982	18.13	7.85	12.9	87.0	0.1	-3.60	0.79	0.78	1.21	3.5	0.004	0.84	0.0	0.05	18.08	0.00	2.276	14.76	6.33	10.4	89.6	0.0	-1.80	0.57	0.80	0.79	1.11	7879	995	1	0	0	0	0	logfile
✔	7T3D	25655	2025-06-19	2021-12-07	3.38	3.70	3.45	3.6	0.022	1.77	0.0	0.11	9.95	0.01	2.093	1.86	0.00	2.0	98.0	0.0	0.97	0.80	0.86	3.40	3.6	0.003	0.67	0.0	0.04	13.33	0.00	2.359	7.16	1.79	3.2	96.8	0.0	0.35	1.39	0.79	0.86	2.67	22122	2796	27	0	21	0	0	logfile
✔	7T37	25650	2025-06-17	2021-12-07	3.7	4.02	—	4.0	0.007	0.85	0.0	0.05	13.20	0.01	2.247	4.17	0.00	3.8	96.2	0.0	-1.43	0.69	0.82	2.15	4.0	0.002	0.50	0.0	0.03	14.25	0.00	2.586	5.18	1.44	2.3	97.7	0.0	1.87	0.31	0.68	0.82	1.57	20176	2476	8	0	8	0	0	logfile
✔	7T3C	25654	2025-06-28	2021-12-07	4.0	4.66	—	4.0	0.008	1.41	4.0	0.07	15.65	0.01	2.068	11.89	0.03	11.1	88.9	0.1	-3.78	0.82	0.69	—	4.0	0.005	0.84	0.0	0.05	17.29	0.00	2.107	22.56	2.25	10.7	89.3	0.0	-2.15	0.97	0.82	0.66	—	32452	4047	23	3	3	0	0	logfile
✔	7T3A	25652	2025-06-20	2021-12-07	4.0	4.44	—	4.2	0.006	1.20	1.0	0.07	15.61	0.01	2.234	7.29	0.04	9.3	90.7	0.0	-3.22	0.81	0.81	—	4.2	0.004	0.79	0.0	0.05	16.98	0.00	2.296	14.83	2.12	8.4	91.6	0.0	-1.33	0.81	0.81	0.81	—	23310	2897	11	0	1	0	0	logfile
✔	7W8J	32357	2025-06-24	2021-12-07	2.5	2.29	2.50	2.5	0.014	1.62	0.0	0.08	14.21	0.00	1.909	2.70	0.24	2.5	97.5	0.0	-0.35	0.60	0.76	5.44	2.4	0.006	0.71	0.0	0.05	15.65	0.01	1.818	4.17	2.00	3.6	96.4	0.0	0.36	1.56	0.77	0.89	5.26	28678	3548	20	0	4	290	0	logfile
✔	7W88	32353	2025-06-06	2021-12-07	3.5	3.65	—	3.6	0.003	0.71	0.0	0.04	16.87	0.00	2.225	15.29	8.23	15.2	84.8	0.0	-5.15	0.70	0.69	1.82	3.6	0.003	0.71	0.0	0.04	17.44	0.01	2.434	11.50	6.81	15.3	84.7	0.0	-2.97	0.50	0.69	0.69	1.72	7138	896	1	0	0	0	0	logfile
✔	7T38	25651	2025-06-17	2021-12-07	3.8	4.03	—	4.0	0.004	0.78	0.0	0.04	13.60	0.01	2.319	4.19	0.39	3.1	96.9	0.0	-1.24	0.68	0.81	1.54	4.0	0.005	0.65	0.0	0.04	15.56	0.00	2.474	5.86	2.13	3.9	96.1	0.0	1.32	1.56	0.71	0.84	1.30	19404	2432	4	0	0	0	0	logfile
✔	7W7U	32348	2025-06-06	2021-12-06	3.0	2.54	2.93	3.0	0.007	0.56	0.0	0.04	12.54	0.00	1.966	7.56	0.00	2.6	97.4	0.0	0.77	0.59	0.77	1.85	3.0	0.003	0.54	0.0	0.04	16.25	0.00	1.968	7.11	2.32	2.0	98.0	0.0	1.10	1.30	0.58	0.79	1.65	7833	1015	2	0	2	0	0	logfile
✔	7T32	25648	2025-06-05	2021-12-06	3.4	3.96	—	3.9	0.006	0.77	0.0	0.04	14.07	0.01	2.313	6.67	0.00	5.1	94.6	0.3	1.86	0.44	0.76	0.75	3.9	0.003	0.69	0.0	0.04	15.99	0.00	2.532	7.92	2.11	3.5	96.2	0.3	2.53	1.25	0.45	0.80	0.65	2861	375	2	0	1	0	0	logfile
✔	7QFW	13950	2025-06-07	2021-12-06	3.86	2.50	3.83	2.1	0.006	0.98	0.0	0.05	22.55	0.01	2.276	6.63	0.36	3.9	96.1	0.0	-4.68	0.71	0.67	1.40	2.1	0.004	0.70	0.0	0.04	22.78	0.00	2.410	12.15	1.67	3.8	96.2	0.0	-0.86	1.16	0.71	0.66	0.98	8765	917	4	64	0	0	0	logfile
✔	7W7W	32350	2025-06-06	2021-12-06	3.2	2.98	3.21	3.2	0.006	1.16	0.0	0.04	13.44	0.00	2.051	8.21	0.00	2.9	97.1	0.0	0.82	0.59	0.74	2.05	3.2	0.003	0.86	0.0	0.04	15.90	0.00	1.680	8.09	2.30	3.7	96.3	0.0	0.62	0.39	0.58	0.76	1.87	7870	1018	2	0	2	0	0	logfile
✔	7W7V	32349	2025-06-06	2021-12-06	3.0	2.82	3.01	3.0	0.010	0.56	0.0	0.04	13.32	0.00	2.010	8.84	0.00	2.5	97.5	0.0	0.63	0.59	0.73	1.18	3.0	0.003	0.58	0.0	0.04	16.57	0.00	2.030	6.74	2.78	2.3	97.7	0.0	0.82	0.53	0.60	0.76	1.85	7823	1012	2	0	2	0	0	logfile
✔	7QFQ	13947	2025-06-09	2021-12-06	3.6	3.83	3.58	4.0	0.002	0.54	0.0	0.04	12.93	0.00	2.177	8.31	0.00	5.4	94.6	0.0	-0.70	0.65	0.70	1.50	4.0	0.003	0.56	0.0	0.04	14.80	0.00	2.467	6.61	1.26	6.1	93.9	0.0	-0.85	0.38	0.66	0.72	1.46	10659	1291	1	0	0	0	0	logfile
✔	7W7P	32346	2025-06-11	2021-12-06	3.67	3.88	—	4.0	0.003	0.68	0.0	0.04	14.56	0.01	2.183	13.63	0.00	3.8	96.2	0.0	0.05	0.66	0.65	0.79	4.0	0.004	0.76	0.0	0.05	17.21	0.00	2.361	15.07	4.22	5.9	94.1	0.0	-0.22	0.81	0.66	0.70	0.50	13176	1667	6	0	0	0	0	logfile
✔	7T2P	25621	2025-06-20	2021-12-06	3.47	3.82	3.44	3.8	0.023	1.90	3.0	0.15	13.52	0.01	2.373	1.05	0.39	3.1	95.5	1.4	-0.26	0.78	0.79	2.09	3.8	0.005	0.78	0.0	0.05	13.26	0.00	2.364	7.24	1.60	6.7	92.9	0.4	-0.81	1.42	0.80	0.83	1.88	22896	2619	54	0	162	0	0	logfile

• ← previous
• Page 458 of 700
• next →