Table showing results for June 2025

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7W7W	32350	2025-06-06	2021-12-06	3.2	2.98	3.21	3.2	0.006	1.16	0.0	0.04	13.44	0.00	2.051	8.21	0.00	2.9	97.1	0.0	0.82	0.59	0.74	2.05	3.2	0.003	0.86	0.0	0.04	15.90	0.00	1.680	8.09	2.30	3.7	96.3	0.0	0.62	0.39	0.58	0.76	1.87	7870	1018	2	0	2	0	0	logfile
✔	7W7V	32349	2025-06-06	2021-12-06	3.0	2.82	3.01	3.0	0.010	0.56	0.0	0.04	13.32	0.00	2.010	8.84	0.00	2.5	97.5	0.0	0.63	0.59	0.73	1.18	3.0	0.003	0.58	0.0	0.04	16.57	0.00	2.030	6.74	2.78	2.3	97.7	0.0	0.82	0.53	0.60	0.76	1.85	7823	1012	2	0	2	0	0	logfile
✔	7W7F	32343	2025-06-12	2021-12-04	3.35	3.74	—	3.7	0.017	1.04	0.0	0.07	18.83	0.01	2.144	13.75	0.31	8.1	91.6	0.3	-1.42	0.42	0.74	1.86	3.7	0.004	0.80	0.0	0.05	17.39	0.00	2.296	13.25	2.36	7.7	92.1	0.1	-0.83	0.43	0.42	0.76	1.85	11987	1424	7	0	29	0	0	logfile
✔	7T2G	25612	2025-06-05	2021-12-04	2.5	1.71	—	1.4	0.007	0.88	0.0	0.05	12.03	0.01	2.214	13.39	1.00	3.5	96.5	0.0	0.61	0.80	0.81	5.15	1.4	0.003	0.59	0.0	0.04	14.61	0.00	2.400	9.58	1.72	2.5	97.5	0.0	0.59	0.41	0.80	0.81	3.91	6922	898	5	0	3	8	0	logfile
✔	7W7E	32342	2025-06-07	2021-12-04	3.4	3.51	—	3.9	0.006	0.67	2.0	0.05	13.83	0.00	2.120	8.28	0.32	8.8	91.2	0.0	-1.54	0.68	0.82	2.16	3.9	0.003	0.67	0.0	0.04	16.58	0.00	2.193	6.74	3.68	6.0	94.0	0.0	-0.82	0.47	0.68	0.83	1.91	8524	1090	6	0	1	0	0	logfile
✔	7T2H	25613	2025-06-07	2021-12-04	3.2	3.41	3.22	3.4	0.004	0.53	0.0	0.04	14.19	0.00	2.158	8.69	0.65	3.6	96.4	0.0	-3.17	0.66	0.81	3.01	3.4	0.003	0.59	0.0	0.04	15.65	0.00	2.506	8.45	2.59	3.5	96.5	0.0	-0.71	0.37	0.60	0.79	2.51	8677	1119	6	0	1	0	0	logfile
✔	7QER	13938	2025-06-17	2021-12-03	2.2	2.66	2.18	2.3	0.009	0.94	0.0	0.05	14.11	0.00	2.117	3.04	2.94	1.6	98.4	0.0	-0.05	0.84	0.88	3.46	2.3	0.004	0.62	0.0	0.04	15.00	0.00	2.578	2.38	1.80	1.5	98.5	0.0	3.56	1.23	0.84	0.89	3.39	19097	2244	36	0	60	305	0	logfile
✔	7QEY	13944	2025-06-08	2021-12-03	2.0	2.46	—	2.2	0.005	0.85	0.0	0.03	10.53	0.00	2.199	3.57	2.35	1.7	98.3	0.0	1.74	0.77	0.90	5.27	2.2	0.003	0.67	0.0	0.04	13.46	0.00	2.547	3.62	2.15	2.1	97.9	0.0	3.48	1.01	0.78	0.92	3.66	9467	1092	18	0	30	281	0	logfile
✔	7QEQ	13937	2025-06-17	2021-12-03	1.9	2.38	1.89	2.1	0.005	0.87	0.0	0.04	12.39	0.00	2.181	2.19	1.18	1.1	98.9	0.0	1.60	0.82	0.90	4.56	2.1	0.003	0.62	0.0	0.04	14.42	0.00	2.564	3.47	0.99	2.3	97.7	0.0	4.04	0.99	0.82	0.92	4.14	19313	2268	36	0	60	305	0	logfile
✔	7QEN	13934	2025-06-16	2021-12-03	3.46	2.43	3.43	2.1	0.006	0.96	0.0	0.06	19.01	0.01	2.068	4.07	0.20	3.6	96.4	0.0	-3.65	0.74	0.75	2.13	2.1	0.004	0.80	1.0	0.04	19.93	0.00	1.965	10.32	1.80	2.7	97.3	0.0	1.16	0.49	0.77	0.78	1.60	19205	2209	8	70	20	0	0	logfile
✔	7T2E	25611	2025-06-04	2021-12-03	2.7	3.14	—	3.0	0.003	0.54	0.0	0.04	16.11	0.00	2.242	1.92	1.18	0.3	99.7	0.0	0.14	0.34	0.84	5.04	3.0	0.002	0.47	0.0	0.04	16.28	0.00	2.620	1.92	1.57	0.6	99.4	0.0	0.51	0.13	0.36	0.86	4.87	2390	312	2	0	0	0	0	logfile
✔	7QET	13940	2025-06-17	2021-12-03	2.1	2.53	2.10	2.3	0.006	0.88	0.0	0.04	13.42	0.00	2.140	1.99	2.38	2.2	97.8	0.0	1.49	0.82	0.90	3.95	2.3	0.003	0.57	0.0	0.04	14.71	0.00	2.547	3.20	2.53	1.6	98.4	0.0	3.53	0.37	0.82	0.92	3.84	19205	2256	36	0	60	305	0	logfile
✔	7QEW	13943	2025-06-08	2021-12-03	2.1	2.62	—	2.2	0.005	0.86	0.0	0.03	11.15	0.00	2.191	3.73	2.18	3.3	96.7	0.0	1.32	0.78	0.89	4.62	2.3	0.004	0.67	0.0	0.04	14.50	0.00	2.552	4.83	1.59	3.4	96.6	0.0	2.95	1.05	0.79	0.92	3.36	9702	1128	18	0	30	234	0	logfile
✔	7QEo	13935	2025-06-04	2021-12-03	2.9	3.47	—	3.1	0.007	0.78	0.0	0.04	13.54	0.00	2.106	5.39	0.00	3.9	96.1	0.0	0.61	0.78	0.88	3.13	3.1	0.003	0.66	0.0	0.04	15.48	0.00	2.587	5.71	0.91	3.1	96.9	0.0	2.60	0.48	0.77	0.87	2.46	3056	368	6	0	6	4	0	logfile
✔	7QES	13939	2025-06-04	2021-12-03	2.6	3.37	—	3.0	0.006	0.86	0.0	0.04	13.93	0.00	2.122	3.25	0.00	3.9	96.1	0.0	-0.99	0.77	0.86	3.39	3.0	0.003	0.62	0.0	0.04	15.49	0.00	2.520	3.41	1.22	3.9	96.1	0.0	2.62	1.20	0.78	0.87	2.90	3076	366	6	0	10	14	0	logfile
✔	7QEU	13941	2025-06-04	2021-12-03	2.7	3.39	—	3.0	0.007	0.80	0.0	0.04	13.54	0.00	2.135	3.49	0.00	2.6	97.4	0.0	0.76	0.78	0.87	3.01	3.1	0.003	0.63	0.0	0.04	15.15	0.00	2.592	3.83	0.62	2.3	97.7	0.0	3.46	1.19	0.78	0.88	2.78	3002	359	6	0	6	7	0	logfile
✔	7QEV	13942	2025-06-04	2021-12-03	2.9	3.46	—	3.1	0.009	0.86	0.0	0.05	13.68	0.00	2.164	5.92	0.00	4.3	95.7	0.0	-0.15	0.79	0.86	3.19	3.1	0.003	0.70	0.0	0.04	16.39	0.00	2.477	6.70	0.87	3.7	96.3	0.0	2.07	2.01	0.79	0.86	2.33	3204	383	6	0	8	8	0	logfile
✔	7W72	32336	2025-06-17	2021-12-02	3.1	2.86	—	3.0	0.007	0.92	7.0	0.06	15.94	0.01	2.032	14.54	0.39	8.3	91.7	0.0	-1.15	0.76	0.85	3.20	3.0	0.003	0.63	0.0	0.04	16.18	0.00	2.328	7.83	2.12	6.8	93.2	0.0	0.00	1.12	0.72	0.86	2.84	19188	2398	10	0	7	0	0	logfile
✔	7W6S	32334	2025-06-17	2021-12-02	2.8	3.21	—	3.2	0.005	0.68	0.0	0.04	13.60	0.00	2.191	9.61	0.18	6.3	93.7	0.0	-3.03	0.69	0.83	2.38	3.2	0.004	0.80	0.0	0.04	16.23	0.00	2.443	7.99	2.22	4.4	95.6	0.0	0.52	0.68	0.67	0.83	1.54	20268	2508	8	0	0	0	0	logfile
✔	7T22	25609	2025-06-21	2021-12-02	4.2	4.73	—	4.4	0.005	1.41	0.0	0.04	10.32	0.00	1.992	5.52	1.18	1.5	98.5	0.0	2.51	0.83	0.75	—	4.4	0.003	1.08	0.0	0.04	12.36	0.00	1.022	15.59	0.00	2.3	97.7	0.0	1.19	0.90	0.85	0.78	—	24536	3084	15	13	15	0	0	logfile

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