Table showing results for June 2025

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7W6P	32331	2025-06-07	2021-12-02	3.47	3.79	—	9.6	0.004	0.69	0.0	0.04	13.68	0.00	2.196	14.60	0.11	7.0	93.0	0.0	-0.94	0.22	0.11	0.18	8.7	0.003	0.70	0.0	0.04	15.62	0.00	2.511	12.44	2.22	5.3	94.7	0.0	-0.51	1.92	0.31	0.25	0.72	8408	1083	6	0	1	0	0	logfile
✔	7T22	25609	2025-06-21	2021-12-02	4.2	4.73	—	4.4	0.005	1.41	0.0	0.04	10.32	0.00	1.992	5.52	1.18	1.5	98.5	0.0	2.51	0.83	0.75	—	4.4	0.003	1.08	0.0	0.04	12.36	0.00	1.022	15.59	0.00	2.3	97.7	0.0	1.19	0.90	0.85	0.78	—	24536	3084	15	13	15	0	0	logfile
✔	7W6S	32334	2025-06-17	2021-12-02	2.8	3.21	—	3.2	0.005	0.68	0.0	0.04	13.60	0.00	2.191	9.61	0.18	6.3	93.7	0.0	-3.03	0.69	0.83	2.38	3.2	0.004	0.80	0.0	0.04	16.23	0.00	2.443	7.99	2.22	4.4	95.6	0.0	0.52	0.68	0.67	0.83	1.54	20268	2508	8	0	0	0	0	logfile
✔	7W6M	32329	2025-06-27	2021-12-02	4.7	4.96	4.73	4.7	0.005	0.90	0.0	0.06	25.50	0.00	2.107	9.16	0.00	4.4	95.6	0.0	-0.63	0.85	0.80	—	4.7	0.003	0.86	0.0	0.05	14.45	0.00	2.376	7.80	0.00	5.0	95.0	0.0	-0.71	0.43	0.85	0.81	—	30756	3672	51	0	204	0	0	logfile
✔	7W6N	32330	2025-06-17	2021-12-02	3.4	3.58	—	3.5	0.011	0.90	0.0	0.05	14.87	0.01	2.045	18.00	0.37	13.3	86.7	0.0	-4.26	0.68	0.82	2.54	3.6	0.003	0.74	0.0	0.04	16.50	0.01	2.437	8.08	2.47	3.2	96.8	0.0	-0.44	1.58	0.66	0.82	1.58	19720	2436	8	0	0	0	0	logfile
✔	7QDZ	13928	2025-06-19	2021-12-01	3.6	3.72	3.42	3.4	0.007	0.98	0.0	0.05	14.68	0.01	1.941	17.90	0.00	5.1	94.8	0.1	-1.48	0.86	0.81	1.60	3.3	0.004	0.84	0.0	0.04	16.44	0.00	2.211	10.10	1.69	8.2	91.8	0.0	-0.28	0.96	0.86	0.81	1.04	22591	2924	5	6	0	0	0	logfile
✔	7W6K	32328	2025-06-05	2021-12-01	3.5	4.56	3.57	4.1	0.007	1.13	4.0	0.07	14.61	0.01	2.337	47.37	2.01	7.1	92.9	0.0	-3.58	0.66	0.76	1.46	4.2	0.003	0.71	0.0	0.04	17.52	0.00	2.542	11.75	4.02	4.6	95.4	0.0	1.12	3.50	0.63	0.77	0.63	6468	820	2	0	0	0	0	logfile
✔	7W68	32326	2025-06-22	2021-12-01	4.4	3.35	—	2.7	0.013	1.73	35.0	0.15	17.02	0.01	1.130	27.44	2.99	15.1	82.3	2.6	-4.91	0.68	0.67	—	6.0	0.004	0.89	0.0	0.05	14.54	0.01	2.366	17.16	0.07	10.5	89.2	0.3	-2.20	1.09	0.66	0.65	—	25833	3249	6	0	0	0	0	logfile
✔	7QE5	13930	2025-06-10	2021-12-01	4.7	4.93	4.03	4.7	0.013	2.06	17.0	0.11	14.37	0.02	2.209	6.87	1.14	4.8	95.0	0.3	-2.59	0.65	0.66	—	4.7	0.003	0.65	0.0	0.04	13.11	0.01	2.337	9.36	0.00	4.9	95.0	0.1	0.61	1.09	0.64	0.68	—	11652	740	2	0	0	0	5932	logfile
✔	7QDY	13927	2025-06-19	2021-12-01	3.1	2.87	2.99	3.0	0.009	1.11	0.0	0.06	14.61	0.01	1.910	11.71	0.00	5.7	94.2	0.1	-1.41	0.77	0.80	2.42	3.0	0.005	0.74	0.0	0.04	16.37	0.00	2.329	6.17	2.32	9.1	90.9	0.0	-0.39	0.44	0.80	0.87	2.14	22924	2991	5	6	0	0	0	logfile
✔	7QDS	13925	2025-06-12	2021-11-30	3.8	3.53	3.57	3.7	0.005	0.86	1.0	0.05	14.59	0.01	2.067	14.28	0.00	5.7	94.3	0.0	-0.33	0.80	0.82	1.63	3.7	0.003	0.67	0.0	0.04	16.52	0.00	2.476	6.47	2.29	9.7	90.3	0.0	0.13	0.45	0.80	0.82	1.18	13798	1771	4	0	0	0	0	logfile
✔	7T0Z	25585	2025-06-27	2021-11-30	3.0	2.77	2.87	2.9	0.006	0.75	1.0	0.05	14.33	0.01	1.966	7.00	0.00	5.2	94.8	0.0	-0.22	0.66	0.80	3.88	2.9	0.003	0.57	0.0	0.04	14.98	0.00	2.398	5.28	1.53	3.3	96.7	0.0	0.44	1.19	0.68	0.83	3.70	31129	1912	17	0	26	0	15348	logfile
✔	7W5X	32323	2025-06-29	2021-11-30	3.4	2.92	—	3.2	0.006	0.80	0.0	0.05	17.75	0.01	2.257	4.65	0.35	5.8	94.2	0.1	-5.01	0.61	0.79	2.44	3.2	0.002	0.55	0.0	0.04	19.06	0.00	2.489	5.57	1.71	4.0	96.0	0.0	-1.07	1.25	0.61	0.76	1.59	34265	3965	9	150	0	0	0	logfile
✔	7W5W	32322	2025-06-28	2021-11-30	4.55	4.63	—	4.5	0.007	1.00	0.0	0.06	18.25	0.01	1.968	11.04	0.91	6.6	93.2	0.1	-4.65	0.74	0.79	—	4.5	0.003	0.68	0.0	0.04	17.21	0.00	2.125	10.75	0.00	6.2	93.7	0.0	-1.86	0.84	0.75	0.79	—	33053	3877	10	126	3	0	0	logfile
✔	7T0V	25582	2025-06-23	2021-11-30	3.67	3.89	—	3.8	0.004	0.73	0.0	0.04	11.58	0.00	1.857	10.12	1.71	4.0	95.8	0.1	-0.13	0.80	0.77	1.76	3.8	0.003	0.69	0.0	0.04	15.50	0.00	1.911	10.95	2.49	4.1	95.9	0.0	1.08	1.39	0.81	0.78	0.89	26397	3397	13	0	20	0	0	logfile
✔	7T10	25586	2025-06-07	2021-11-30	2.5	2.70	—	2.8	0.005	1.00	0.0	0.06	12.36	0.01	2.235	3.61	0.73	3.0	97.0	0.0	0.62	0.64	0.83	4.77	2.8	0.002	0.55	0.0	0.04	14.01	0.00	2.528	1.96	1.10	2.2	97.8	0.0	1.68	0.91	0.64	0.83	3.70	8429	1146	9	0	0	5	0	logfile
✔	7W5Y	32324	2025-06-29	2021-11-30	4.2	2.66	—	2.6	0.006	0.95	0.0	0.06	19.02	0.01	2.180	10.33	0.68	9.1	90.8	0.1	-4.94	0.66	0.63	—	2.6	0.003	0.66	0.0	0.04	18.29	0.00	2.506	10.58	0.00	7.5	92.5	0.0	-2.37	0.52	0.67	0.64	—	34577	3963	9	166	0	0	0	logfile
✔	7T0W	25583	2025-06-29	2021-11-30	3.0	3.06	2.11	3.3	0.007	0.81	0.0	0.05	14.13	0.01	2.040	10.99	0.32	5.9	94.1	0.0	-1.01	0.67	0.79	3.94	3.3	0.003	0.59	0.0	0.04	14.80	0.00	2.286	6.40	1.22	4.1	95.9	0.0	-0.28	0.59	0.66	0.80	3.61	34395	2139	16	0	24	0	16968	logfile
✔	7T11	25587	2025-06-07	2021-11-30	2.7	2.94	—	3.0	0.004	0.61	0.0	0.04	10.84	0.00	2.107	3.46	0.27	2.4	97.6	0.0	0.96	0.60	0.74	3.90	3.0	0.002	0.52	0.0	0.04	13.61	0.00	2.520	2.95	1.74	2.1	97.9	0.0	1.51	0.96	0.62	0.79	3.09	8151	1132	7	0	2	0	0	logfile
✘	7T02	25577	2025-06-13	2021-11-29	3.8	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	14359	1752	4	25	5	0	0	logfile

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