Table showing results for June 2025

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✘	7T02	25577	2025-06-13	2021-11-29	3.8	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	14359	1752	4	25	5	0	0	logfile
✔	7W55	32314	2025-06-16	2021-11-29	2.8	2.24	—	3.0	0.005	0.72	1.0	0.06	11.82	0.00	2.126	2.62	0.50	2.1	97.9	0.0	0.64	0.73	0.73	3.93	3.0	0.003	0.58	0.0	0.04	15.56	0.00	2.300	6.40	1.98	2.9	97.1	0.0	0.69	0.71	0.73	0.76	3.73	18334	1167	6	0	0	0	9112	logfile
✔	7T01	25574	2025-06-04	2021-11-29	2.69	2.92	2.49	3.2	0.004	0.87	0.0	0.05	12.30	0.01	2.335	1.37	0.00	3.8	96.2	0.0	-1.08	0.71	0.83	4.37	3.2	0.004	1.00	0.0	0.05	16.20	0.01	2.494	13.50	2.68	4.5	95.5	0.0	-1.35	1.10	0.72	0.85	3.78	3343	428	3	0	0	0	0	logfile
✔	7QDR	13923	2025-06-19	2021-11-29	3.7	3.84	3.49	3.7	0.006	0.84	0.0	0.05	14.04	0.01	2.021	12.64	0.00	5.9	94.0	0.1	-1.43	0.81	0.86	2.06	3.7	0.003	0.66	0.0	0.04	15.94	0.00	2.555	6.75	2.79	10.2	89.8	0.0	-0.35	1.15	0.80	0.84	1.63	22818	2991	4	0	0	0	0	logfile
✔	7W56	32315	2025-06-15	2021-11-29	2.9	2.28	—	2.2	0.006	0.72	1.0	0.05	11.52	0.00	2.129	5.03	0.41	3.3	96.7	0.0	0.50	0.72	0.73	3.72	2.2	0.004	0.61	0.0	0.04	15.02	0.00	2.371	6.71	1.63	4.9	95.1	0.0	0.70	1.30	0.73	0.76	3.36	17881	1145	6	0	0	0	8894	logfile
✔	7W53	32313	2025-06-15	2021-11-29	3.2	2.94	—	3.0	0.007	0.86	1.0	0.05	12.62	0.00	1.769	6.17	0.63	3.9	96.1	0.0	-0.67	0.58	0.76	3.10	3.0	0.003	0.56	0.0	0.04	15.32	0.00	2.303	5.08	0.95	3.0	97.0	0.0	0.72	1.34	0.57	0.77	2.03	17354	1109	6	0	0	0	8644	logfile
✔	7SZJ	25570	2025-06-27	2021-11-28	3.11	3.33	—	3.3	0.006	0.53	0.0	0.04	17.13	0.00	1.979	29.92	0.00	6.8	93.1	0.1	0.24	0.73	0.83	2.24	3.3	0.005	0.66	0.0	0.04	18.65	0.00	2.009	6.61	2.19	6.3	93.7	0.1	-0.03	1.63	0.76	0.87	1.76	31173	3683	10	106	4	0	0	logfile
✔	7QDG	13916	2025-06-21	2021-11-27	3.4	3.51	3.32	3.6	0.016	1.70	13.0	0.11	15.65	0.01	1.267	54.49	7.17	4.6	95.0	0.4	0.28	0.83	0.80	1.52	3.5	0.004	0.85	0.0	0.05	15.03	0.00	2.350	13.46	2.38	3.7	96.3	0.0	-0.57	0.94	0.82	0.82	1.51	25570	3193	17	0	47	0	0	logfile
✔	7QDH	13919	2025-06-21	2021-11-27	4.2	4.45	4.27	4.4	0.018	1.67	16.0	0.10	14.72	0.01	1.441	62.81	7.70	4.0	95.6	0.4	0.10	0.70	0.60	—	4.4	0.003	0.80	0.0	0.05	12.90	0.01	2.442	15.09	0.00	5.1	94.8	0.0	-1.19	1.79	0.72	0.68	—	25712	3219	16	0	44	0	0	logfile
✔	7SZi	25567	2025-06-06	2021-11-27	2.7	3.34	—	3.1	0.010	0.48	0.0	0.04	13.00	0.00	2.265	3.93	0.12	3.5	96.4	0.1	0.36	0.70	0.86	5.04	3.1	0.006	0.59	0.0	0.04	14.29	0.00	2.540	2.38	0.72	4.5	95.4	0.1	0.01	0.26	0.72	0.88	5.06	8089	1038	4	0	0	0	0	logfile
✘	7QDo	13922	2025-06-04	2021-11-27	3.6	3.83	3.27	3.7	0.005	0.82	0.0	0.05	11.62	0.00	2.038	7.51	0.00	10.0	90.0	0.0	-0.82	0.71	0.74	3.77	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	3304	424	2	0	0	0	0	logfile
✔	7W3T	32293	2025-06-04	2021-11-26	3.59	2.49	3.52	2.2	0.004	0.76	0.0	0.05	17.98	0.01	2.259	8.96	0.00	4.6	95.4	0.0	-2.83	0.76	0.75	4.00	2.1	0.003	0.69	0.0	0.05	15.19	0.00	2.573	8.27	1.25	6.3	93.7	0.0	-2.80	0.32	0.76	0.76	3.83	1455	176	3	0	7	0	0	logfile
✔	7W40	32298	2025-06-08	2021-11-26	3.0	2.99	—	3.0	0.011	1.29	2.0	0.08	12.47	0.01	2.266	7.35	1.92	2.6	97.2	0.2	-0.42	0.62	0.66	1.97	2.9	0.003	0.67	1.0	0.04	15.71	0.00	2.465	7.68	3.54	3.4	96.6	0.0	1.07	1.22	0.63	0.72	1.70	9236	1184	6	0	1	0	0	logfile
✔	7W3Z	32297	2025-06-09	2021-11-26	3.0	3.02	—	3.0	0.010	1.25	0.0	0.08	12.51	0.01	2.266	6.00	1.61	2.5	97.5	0.0	-0.23	0.68	0.76	3.00	3.0	0.003	0.61	0.0	0.04	15.89	0.00	2.425	6.00	2.86	2.5	97.5	0.0	1.16	1.54	0.70	0.80	1.98	10221	1295	7	0	1	0	0	logfile
✔	7W4A	32299	2025-06-10	2021-11-26	2.76	2.16	2.70	2.2	0.006	0.72	0.0	0.04	13.80	0.00	2.048	7.08	0.09	2.3	97.7	0.0	1.29	0.63	0.77	3.24	2.2	0.003	0.61	0.0	0.04	15.80	0.00	2.013	6.52	1.42	3.2	96.8	0.0	1.54	0.38	0.63	0.80	3.35	9855	1245	5	0	7	12	0	logfile
✔	7QD5	13908	2025-06-16	2021-11-26	3.1	3.21	3.05	3.1	0.005	0.82	0.0	0.05	19.64	0.01	2.266	2.08	0.13	2.4	97.6	0.0	-0.83	0.72	0.71	2.46	3.2	0.003	0.53	0.0	0.04	20.97	0.00	2.227	5.46	1.42	2.4	97.6	0.0	2.38	0.35	0.74	0.75	1.90	18380	1816	6	180	0	0	0	logfile
✔	7QD8	13910	2025-06-12	2021-11-26	3.6	3.90	3.66	3.8	0.004	0.74	0.0	0.05	14.49	0.00	2.273	5.28	0.00	2.3	97.7	0.0	-1.83	0.74	0.69	1.54	3.8	0.003	0.56	0.0	0.04	16.33	0.00	2.469	8.26	1.79	2.5	97.5	0.0	0.58	0.46	0.74	0.69	1.24	14086	1730	2	0	0	0	0	logfile
✔	7W3V	32294	2025-06-06	2021-11-26	3.11	2.33	3.12	2.1	0.004	0.67	0.0	0.05	17.08	0.00	2.228	7.96	0.12	5.7	94.3	0.0	-2.67	0.79	0.79	3.31	2.1	0.006	1.14	1.0	0.06	14.95	0.00	2.137	7.15	2.22	5.8	94.2	0.0	-2.63	0.32	0.80	0.82	3.05	7480	918	8	0	24	0	0	logfile
✔	7W3Y	32296	2025-06-10	2021-11-26	3.0	3.45	—	3.4	0.006	0.68	0.0	0.04	13.23	0.00	2.117	13.31	0.91	6.5	93.5	0.0	-3.33	0.66	0.85	2.45	3.4	0.003	0.72	0.0	0.04	15.97	0.00	2.487	8.56	2.50	3.6	96.4	0.0	0.49	0.80	0.66	0.86	2.72	12088	1492	4	0	0	0	0	logfile
✔	7QD4	13906	2025-06-16	2021-11-26	2.9	3.11	2.96	3.0	0.004	0.82	0.0	0.05	22.06	0.01	2.227	3.43	0.00	2.2	97.8	0.0	-0.77	0.74	0.74	2.94	3.0	0.004	0.59	0.0	0.04	23.15	0.00	2.410	7.77	1.81	3.0	97.0	0.0	2.11	0.87	0.79	0.84	2.28	19118	1816	6	216	0	0	0	logfile

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