Table showing results for June 2025

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7W3X	32295	2025-06-06	2021-11-26	3.21	2.33	3.16	2.2	0.004	0.82	0.0	0.05	18.43	0.00	2.190	8.18	0.00	9.0	91.0	0.0	-2.95	0.77	0.79	3.38	2.1	0.005	0.77	0.0	0.05	15.63	0.00	2.449	9.67	1.86	9.2	90.8	0.0	-2.96	0.95	0.78	0.82	2.92	7429	893	7	0	31	0	0	logfile
✔	7QD4	13906	2025-06-16	2021-11-26	2.9	3.11	2.96	3.0	0.004	0.82	0.0	0.05	22.06	0.01	2.227	3.43	0.00	2.2	97.8	0.0	-0.77	0.74	0.74	2.94	3.0	0.004	0.59	0.0	0.04	23.15	0.00	2.410	7.77	1.81	3.0	97.0	0.0	2.11	0.87	0.79	0.84	2.28	19118	1816	6	216	0	0	0	logfile
✔	7SZ5	25561	2025-06-08	2021-11-25	3.6	4.60	—	3.8	0.007	0.91	0.0	0.06	14.97	0.00	1.947	18.21	2.83	16.8	83.0	0.2	-5.33	0.86	0.75	1.50	3.8	0.004	0.73	0.0	0.04	15.32	0.00	2.384	11.80	2.45	11.2	88.8	0.0	-2.62	1.64	0.91	0.86	1.16	9367	1214	4	0	0	0	0	logfile
✔	7SZ0	25558	2025-06-16	2021-11-25	3.3	4.16	—	3.5	0.005	0.80	0.0	0.05	14.46	0.00	2.175	6.34	1.73	11.1	88.6	0.3	-4.37	0.87	0.82	2.87	3.6	0.002	0.67	0.0	0.05	14.87	0.00	2.433	3.95	1.30	7.2	92.8	0.1	-1.54	0.47	0.91	0.88	2.79	10216	1322	4	0	0	0	0	logfile
✔	7SZ7	25563	2025-06-10	2021-11-25	3.4	4.38	—	3.7	0.005	0.81	0.0	0.05	14.43	0.00	1.707	9.79	1.81	11.0	88.6	0.4	-4.49	0.86	0.78	2.38	3.7	0.003	0.68	0.0	0.04	15.10	0.00	2.473	7.14	1.81	8.4	91.6	0.0	-1.91	0.55	0.92	0.88	2.37	10218	1328	4	0	0	0	0	logfile
✔	7QCU	13899	2025-06-06	2021-11-25	3.25	4.07	—	3.7	0.013	2.28	65.0	0.16	20.45	0.03	1.868	25.18	6.94	6.9	93.1	0.0	-1.89	0.80	0.66	2.63	3.6	0.004	0.92	0.0	0.05	16.95	0.00	2.300	9.75	2.40	7.0	93.0	0.0	-1.42	0.68	0.87	0.81	2.59	7069	888	6	0	20	0	0	logfile
✔	7SZ1	25559	2025-06-16	2021-11-25	3.4	4.37	—	3.5	0.005	0.80	0.0	0.05	14.47	0.00	2.092	10.94	1.65	14.5	85.3	0.2	-4.74	0.85	0.75	1.55	3.6	0.003	0.72	0.0	0.05	15.19	0.00	2.334	7.74	1.99	9.1	90.8	0.1	-2.41	1.65	0.90	0.84	1.35	10216	1322	4	0	0	0	0	logfile
✘	7SXT	25505	2025-06-22	2021-11-24	2.31	3.14	—	2.6	0.005	0.81	0.0	0.05	12.82	0.01	2.287	2.67	0.00	2.8	97.2	0.0	-0.67	0.84	0.83	2.91	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	25248	3120	24	0	60	0	0	logfile
✔	7W2J	32262	2025-06-15	2021-11-24	3.6	2.90	—	3.6	0.035	1.69	0.0	0.56	15.66	0.01	2.011	18.00	0.00	11.0	88.7	0.4	-2.64	0.65	0.79	1.96	3.6	0.004	1.45	0.0	0.06	16.89	0.00	1.804	9.99	2.52	5.4	94.5	0.1	-0.57	0.42	0.63	0.76	1.40	16522	2104	10	0	10	0	0	logfile
✔	7SXW	25508	2025-06-22	2021-11-24	2.85	3.59	—	2.9	0.005	0.79	0.0	0.05	12.80	0.01	2.290	2.27	0.00	2.8	97.2	0.0	-0.63	0.83	0.80	2.63	3.0	0.005	0.82	2.0	0.05	13.83	0.00	1.539	8.36	1.10	2.4	97.6	0.0	0.15	1.12	0.84	0.83	2.60	25242	3120	24	0	60	0	0	logfile
✔	7SXV	25507	2025-06-22	2021-11-24	2.79	3.66	—	3.1	0.005	0.80	0.0	0.05	12.94	0.01	2.290	2.53	0.00	2.7	97.3	0.0	-0.65	0.82	0.78	2.66	3.2	0.003	0.61	0.0	0.04	13.72	0.00	2.448	5.52	0.91	2.1	97.9	0.0	0.50	1.17	0.83	0.82	2.57	25245	3120	24	0	60	0	0	logfile
✔	7SY4	25516	2025-06-05	2021-11-24	3.35	4.12	—	3.8	0.005	0.88	0.0	0.05	13.36	0.01	2.345	2.34	0.00	1.6	98.4	0.0	-0.68	0.83	0.84	3.10	3.8	0.002	0.55	0.0	0.04	15.56	0.00	2.466	6.25	1.14	2.5	97.5	0.0	1.91	1.17	0.83	0.85	2.54	6554	797	4	0	7	0	0	logfile
✔	7SXU	25506	2025-06-22	2021-11-24	3.0	3.77	—	3.3	0.005	0.79	0.0	0.05	12.88	0.01	2.284	2.37	0.00	2.8	97.2	0.0	-0.63	0.82	0.80	2.83	3.3	0.004	0.64	0.0	0.05	13.74	0.00	2.499	5.86	0.59	2.3	97.7	0.0	0.54	1.22	0.82	0.81	2.42	25248	3120	24	0	60	0	0	logfile
✔	7SY3	25515	2025-06-23	2021-11-24	2.95	3.95	—	3.2	0.005	0.86	0.0	0.06	13.04	0.01	2.278	2.67	0.00	1.9	98.1	0.0	-0.06	0.84	0.82	2.39	3.3	0.004	0.65	0.0	0.04	14.33	0.00	2.445	7.08	1.06	2.3	97.7	0.0	0.96	1.22	0.85	0.85	2.32	27001	3321	26	0	62	0	0	logfile
✔	7SXY	25510	2025-06-05	2021-11-24	2.79	3.53	—	3.2	0.005	0.87	0.0	0.06	13.17	0.01	2.303	2.81	0.00	1.3	98.7	0.0	-0.48	0.82	0.87	3.37	3.2	0.003	0.55	0.0	0.04	14.94	0.00	2.418	5.78	0.57	1.1	98.7	0.1	1.57	0.42	0.82	0.88	2.79	6557	797	4	0	7	0	0	logfile
✔	7SYD	25522	2025-06-16	2021-11-24	3.1	3.98	—	3.4	0.007	0.81	2.0	0.05	14.22	0.00	2.068	8.34	1.99	10.4	89.4	0.2	-3.66	0.88	0.83	2.90	3.4	0.002	0.61	0.0	0.04	14.76	0.00	2.436	5.25	1.65	5.6	94.4	0.0	-1.04	1.20	0.91	0.88	2.55	10216	1322	4	0	0	0	0	logfile
✔	7SY1	25513	2025-06-24	2021-11-24	2.83	3.75	—	3.0	0.005	0.86	0.0	0.06	12.99	0.01	2.279	3.00	0.03	2.0	98.0	0.0	-0.15	0.85	0.82	2.41	3.1	0.004	0.61	0.0	0.04	14.03	0.00	2.464	6.04	0.58	2.1	97.9	0.0	0.84	0.65	0.86	0.86	2.51	28585	3517	26	0	64	0	0	logfile
✔	7SY8	25520	2025-06-05	2021-11-24	3.14	3.87	—	3.6	0.005	0.90	0.0	0.06	13.43	0.01	2.302	2.81	0.00	1.4	98.6	0.0	-0.20	0.82	0.85	2.97	3.5	0.003	0.57	0.0	0.04	14.85	0.00	2.428	6.41	1.29	2.4	97.6	0.0	1.72	1.12	0.82	0.86	3.02	6552	797	4	0	7	0	0	logfile
✔	7W2Z	32268	2025-06-08	2021-11-24	2.8	3.01	—	3.0	0.010	1.13	1.0	0.06	14.81	0.01	2.078	8.01	0.82	3.6	96.3	0.1	-4.01	0.60	0.80	4.19	3.1	0.003	0.59	0.0	0.04	15.90	0.00	2.517	4.97	2.24	2.7	97.3	0.0	0.26	0.53	0.55	0.78	2.85	9080	1154	8	0	3	0	0	logfile
✔	7SXo	25502	2025-06-21	2021-11-24	3.3	3.41	—	3.4	0.002	0.65	1.0	0.04	14.86	0.00	2.092	8.41	0.07	5.0	94.9	0.1	-0.70	0.77	0.80	2.18	3.4	0.003	0.74	1.0	0.04	15.89	0.00	2.014	7.19	0.59	5.2	94.7	0.1	-0.13	0.38	0.79	0.85	2.01	24894	3160	13	0	19	0	0	logfile

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