Table showing results for June 2025

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7SY6	25518	2025-06-05	2021-11-24	2.81	3.51	—	3.2	0.005	0.89	0.0	0.06	13.40	0.01	2.296	2.58	0.14	2.3	97.7	0.0	-0.71	0.83	0.86	3.13	3.2	0.003	0.63	0.0	0.04	15.55	0.00	2.396	6.41	2.00	1.5	98.5	0.0	1.58	0.58	0.82	0.86	2.72	6553	797	4	0	7	0	0	logfile
✔	7QCN	13897	2025-06-05	2021-11-24	3.4	3.87	—	3.6	0.008	1.48	4.0	0.10	18.42	0.02	2.107	15.06	14.67	8.8	91.0	0.3	-1.90	0.80	0.72	2.34	3.6	0.003	0.69	0.0	0.04	15.21	0.00	2.394	4.66	2.28	6.5	93.5	0.0	-0.62	0.72	0.87	0.86	3.15	6416	814	6	0	18	0	0	logfile
✔	7SXY	25510	2025-06-05	2021-11-24	2.79	3.53	—	3.2	0.005	0.87	0.0	0.06	13.17	0.01	2.303	2.81	0.00	1.3	98.7	0.0	-0.48	0.82	0.87	3.37	3.2	0.003	0.55	0.0	0.04	14.94	0.00	2.418	5.78	0.57	1.1	98.7	0.1	1.57	0.42	0.82	0.88	2.79	6557	797	4	0	7	0	0	logfile
✔	7SY7	25519	2025-06-24	2021-11-24	2.81	3.86	—	3.0	0.005	0.85	0.0	0.06	12.96	0.01	2.281	3.29	0.00	2.0	98.0	0.0	-0.05	0.86	0.83	2.20	3.0	0.003	0.60	0.0	0.04	13.82	0.00	2.503	6.55	0.58	2.2	97.8	0.0	0.74	1.17	0.87	0.86	2.12	28581	3517	26	0	64	0	0	logfile
✔	7SY4	25516	2025-06-05	2021-11-24	3.35	4.12	—	3.8	0.005	0.88	0.0	0.05	13.36	0.01	2.345	2.34	0.00	1.6	98.4	0.0	-0.68	0.83	0.84	3.10	3.8	0.002	0.55	0.0	0.04	15.56	0.00	2.466	6.25	1.14	2.5	97.5	0.0	1.91	1.17	0.83	0.85	2.54	6554	797	4	0	7	0	0	logfile
✔	7SY8	25520	2025-06-05	2021-11-24	3.14	3.87	—	3.6	0.005	0.90	0.0	0.06	13.43	0.01	2.302	2.81	0.00	1.4	98.6	0.0	-0.20	0.82	0.85	2.97	3.5	0.003	0.57	0.0	0.04	14.85	0.00	2.428	6.41	1.29	2.4	97.6	0.0	1.72	1.12	0.82	0.86	3.02	6552	797	4	0	7	0	0	logfile
✘	7SXT	25505	2025-06-22	2021-11-24	2.31	3.14	—	2.6	0.005	0.81	0.0	0.05	12.82	0.01	2.287	2.67	0.00	2.8	97.2	0.0	-0.67	0.84	0.83	2.91	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	25248	3120	24	0	60	0	0	logfile
✔	7SXZ	25511	2025-06-24	2021-11-24	2.61	3.54	—	2.9	0.005	0.85	0.0	0.06	12.89	0.01	2.280	3.23	0.00	2.0	98.0	0.0	-0.12	0.83	0.83	2.27	2.9	0.004	0.61	0.0	0.04	14.18	0.00	2.457	6.94	0.62	2.3	97.7	0.0	0.82	1.17	0.83	0.83	2.60	28583	3517	26	0	64	0	0	logfile
✔	7SY2	25514	2025-06-05	2021-11-24	3.11	3.85	—	3.5	0.005	0.88	0.0	0.06	13.46	0.01	2.307	2.03	0.14	1.4	98.6	0.0	-0.46	0.82	0.85	2.53	3.5	0.003	0.53	0.0	0.04	15.25	0.00	2.494	6.25	1.29	2.1	97.9	0.0	1.67	1.15	0.83	0.87	2.47	6554	797	4	0	7	0	0	logfile
✔	7SY3	25515	2025-06-23	2021-11-24	2.95	3.95	—	3.2	0.005	0.86	0.0	0.06	13.04	0.01	2.278	2.67	0.00	1.9	98.1	0.0	-0.06	0.84	0.82	2.39	3.3	0.004	0.65	0.0	0.04	14.33	0.00	2.445	7.08	1.06	2.3	97.7	0.0	0.96	1.22	0.85	0.85	2.32	27001	3321	26	0	62	0	0	logfile
✔	7SXR	25503	2025-06-22	2021-11-24	3.0	3.85	—	3.2	0.005	0.82	0.0	0.06	12.75	0.01	2.287	3.36	0.00	1.9	98.1	0.0	-0.27	0.87	0.84	2.71	3.2	0.003	0.54	0.0	0.04	13.42	0.00	2.505	5.02	0.51	1.9	98.1	0.0	0.72	0.50	0.87	0.87	2.50	25236	3120	24	0	60	0	0	logfile
✔	7SWQ	25482	2025-06-06	2021-11-21	3.79	4.09	3.82	4.0	0.004	0.74	0.0	0.04	18.24	0.00	1.915	13.13	0.00	10.7	89.3	0.0	-2.38	0.80	0.76	2.70	4.0	0.003	0.70	0.0	0.04	19.60	0.00	1.935	12.04	3.77	8.6	91.4	0.0	-1.90	0.61	0.83	0.82	1.67	6998	791	4	35	1	0	0	logfile
✔	7SWW	25487	2025-06-04	2021-11-21	3.13	2.34	—	2.0	0.004	0.80	0.0	0.06	13.91	0.01	2.214	9.55	0.00	2.4	97.6	0.0	-0.48	0.58	0.70	2.57	2.0	0.006	0.73	0.0	0.05	15.23	0.00	2.493	9.79	4.02	5.0	95.0	0.0	-0.89	1.19	0.58	0.71	2.14	4172	511	6	0	8	0	0	logfile
✔	7SWX	25488	2025-06-24	2021-11-21	3.13	2.32	—	2.1	0.004	0.72	0.0	0.05	14.73	0.01	2.214	6.52	0.03	2.8	97.2	0.0	-0.62	0.76	0.77	3.45	2.1	0.005	0.73	0.0	0.05	15.40	0.00	2.460	5.51	2.51	3.6	96.4	0.0	-0.41	1.18	0.76	0.79	3.23	28669	3522	36	0	81	0	0	logfile
✘	7SWL	25474	2025-06-20	2021-11-20	2.88	3.12	—	3.1	0.003	0.51	0.0	0.04	11.23	0.00	1.953	5.64	0.95	3.0	96.9	0.1	0.12	0.71	0.82	3.74	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	23907	3070	12	0	19	0	0	logfile
✔	7SWN	25476	2025-06-04	2021-11-20	4.3	3.77	—	3.5	0.007	1.07	0.0	0.06	14.58	0.01	2.203	41.73	0.00	21.9	78.1	0.0	-4.82	0.57	0.68	—	3.5	0.003	0.80	0.0	0.05	13.75	0.01	2.553	16.21	0.00	8.9	91.1	0.0	-3.14	1.20	0.57	0.68	—	3283	422	3	0	0	0	0	logfile
✔	7SWP	25478	2025-06-04	2021-11-20	3.8	3.74	—	4.0	0.008	0.93	0.0	0.05	12.87	0.01	2.202	40.14	0.00	12.1	87.9	0.0	-2.17	0.51	0.71	1.63	3.9	0.005	0.91	0.0	0.05	16.09	0.01	2.438	20.22	7.14	7.7	92.3	0.0	-1.13	2.20	0.53	0.75	1.30	3372	436	3	0	0	0	0	logfile
✔	7SWo	25477	2025-06-05	2021-11-20	4.1	3.78	—	3.7	0.007	0.90	0.0	0.05	14.43	0.01	2.215	26.02	0.19	10.0	90.0	0.0	-2.59	0.65	0.76	—	3.8	0.004	0.78	0.0	0.05	14.06	0.01	2.514	15.82	0.19	6.8	93.2	0.0	-1.35	0.52	0.64	0.75	—	4784	627	3	0	0	0	0	logfile
✘	7SVU	25453	2025-06-23	2021-11-19	3.5	2.79	3.39	3.4	0.023	1.92	12.0	0.11	15.10	0.01	0.871	14.62	0.42	2.3	97.6	0.2	-0.41	0.73	0.74	1.30	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	28015	3283	35	56	22	0	0	logfile
✔	7SWF	25472	2025-06-06	2021-11-19	3.79	4.09	3.82	4.0	0.005	0.73	0.0	0.05	17.16	0.00	2.039	15.69	1.33	9.1	90.9	0.0	-1.82	0.84	0.81	3.02	4.0	0.004	0.73	0.0	0.04	17.94	0.00	2.038	12.71	2.06	7.9	92.1	0.0	-1.35	0.52	0.81	0.83	2.02	6873	778	4	34	1	0	0	logfile

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