Table showing results for June 2025

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7QBi	13887	2025-06-05	2021-11-19	3.46	3.72	3.47	3.7	0.008	1.07	0.0	0.05	14.75	0.01	2.231	3.40	0.00	2.8	97.2	0.0	-1.45	0.59	0.76	2.29	3.7	0.004	0.68	0.0	0.04	14.09	0.00	2.583	9.79	2.84	1.3	98.7	0.0	3.28	1.64	0.60	0.81	2.14	4996	622	8	0	16	0	0	logfile
✔	7SWD	25471	2025-06-11	2021-11-19	3.59	3.73	—	3.7	0.006	0.78	0.0	0.05	15.80	0.01	2.124	14.79	0.00	4.5	95.5	0.0	-0.91	0.73	0.79	2.33	3.7	0.004	0.72	0.0	0.04	16.25	0.00	2.430	10.77	2.62	4.6	95.4	0.0	-1.01	1.21	0.73	0.80	2.29	12833	1652	14	0	9	0	0	logfile
✔	7SVR	25452	2025-06-06	2021-11-19	3.9	4.11	—	4.1	0.004	0.80	0.0	0.05	14.30	0.00	2.213	6.79	0.00	4.3	95.7	0.0	-2.10	0.63	0.74	1.24	4.1	0.003	0.62	0.0	0.04	16.69	0.00	2.556	5.69	2.36	3.5	96.5	0.0	0.68	1.09	0.64	0.75	0.84	7841	1134	3	0	20	0	0	logfile
✔	7SWF	25472	2025-06-06	2021-11-19	3.79	4.09	3.82	4.0	0.005	0.73	0.0	0.05	17.16	0.00	2.039	15.69	1.33	9.1	90.9	0.0	-1.82	0.84	0.81	3.02	4.0	0.004	0.73	0.0	0.04	17.94	0.00	2.038	12.71	2.06	7.9	92.1	0.0	-1.35	0.52	0.81	0.83	2.02	6873	778	4	34	1	0	0	logfile
✔	7SVW	25455	2025-06-14	2021-11-19	3.69	3.57	3.59	3.5	0.012	1.46	9.0	0.07	20.29	0.02	0.955	14.70	2.78	4.0	95.8	0.3	0.11	0.78	0.72	2.09	3.5	0.003	0.61	0.0	0.04	21.88	0.00	2.073	6.33	1.31	3.8	96.2	0.0	1.31	1.56	0.82	0.80	1.94	15830	1484	12	190	2	0	0	logfile
✔	7QBA	13885	2025-06-24	2021-11-18	3.78	3.61	—	57.0	0.006	1.07	18.0	0.06	14.32	0.01	1.363	16.56	0.72	5.6	94.1	0.4	-1.57	0.50	0.82	2.57	57.0	0.004	0.72	0.0	0.05	16.97	0.00	1.911	12.72	4.03	5.9	94.0	0.1	-1.03	0.53	0.50	0.84	1.84	20986	2694	11	0	6	0	0	logfile
✔	7QB9	13882	2025-06-05	2021-11-18	3.1	3.36	3.15	3.4	0.008	1.02	0.0	0.06	12.61	0.01	2.291	2.92	0.00	3.5	96.5	0.0	-2.92	0.56	0.81	2.83	3.4	0.003	0.57	0.0	0.04	12.34	0.00	2.581	3.27	2.52	2.2	97.8	0.0	2.22	0.33	0.55	0.83	2.22	5419	598	4	0	26	0	0	logfile
✔	7W0P	32247	2025-06-09	2021-11-18	3.16	2.41	3.26	3.2	0.003	0.65	0.0	0.04	12.42	0.00	2.199	12.84	0.00	6.6	93.3	0.1	-0.97	0.67	0.67	2.56	3.2	0.004	0.70	0.0	0.04	15.16	0.00	2.471	9.79	2.02	6.9	93.0	0.1	-0.75	0.37	0.68	0.70	2.28	9091	1158	6	0	0	0	0	logfile
✔	7W0B	32237	2025-06-11	2021-11-18	3.33	3.61	—	3.5	0.003	0.60	0.0	0.04	14.32	0.00	2.049	11.71	0.00	5.0	94.9	0.1	0.14	0.84	0.79	1.45	3.5	0.003	0.62	0.0	0.04	16.19	0.00	2.452	8.64	0.90	4.0	95.9	0.1	0.30	0.46	0.85	0.80	1.28	12997	1602	2	0	0	0	0	logfile
✔	7SV7	25445	2025-06-09	2021-11-18	3.8	3.26	—	3.9	0.003	0.94	0.0	0.04	12.83	0.00	2.003	1.99	0.69	2.2	97.8	0.0	-0.82	0.60	0.81	2.35	3.9	0.002	0.54	0.0	0.04	15.04	0.00	1.983	4.75	3.07	2.9	97.1	0.0	1.32	0.55	0.62	0.81	1.46	9673	1173	3	0	32	0	0	logfile
✔	7W0M	32244	2025-06-09	2021-11-18	3.71	2.51	3.74	2.2	0.004	0.76	0.0	0.05	14.11	0.00	2.230	11.46	0.00	5.6	94.4	0.0	-1.90	0.73	0.74	2.42	2.2	0.004	0.71	0.0	0.04	16.80	0.00	2.478	8.69	2.99	6.8	93.2	0.0	-1.22	0.95	0.74	0.74	2.35	8929	1134	6	0	1	0	0	logfile
✔	7W0C	32238	2025-06-12	2021-11-18	3.93	4.02	—	3.8	0.002	0.55	0.0	0.04	16.22	0.00	2.105	14.31	0.07	4.2	95.8	0.1	-0.14	0.86	0.73	0.17	3.8	0.003	0.65	0.0	0.04	17.42	0.00	2.411	13.03	1.56	4.9	95.1	0.1	-0.01	0.46	0.86	0.74	0.11	13663	1492	5	72	2	0	0	logfile
✔	7W0F	32241	2025-06-12	2021-11-18	4.55	8.43	—	7.5	0.003	0.64	1.0	0.04	17.27	0.00	1.356	21.15	1.19	4.4	94.7	0.8	-0.94	0.71	0.38	—	7.3	0.003	0.73	0.0	0.04	17.40	0.00	2.403	20.89	0.00	5.8	94.1	0.1	-1.05	1.55	0.86	0.70	—	14097	1492	6	94	0	0	0	logfile
✔	7QBC	13886	2025-06-05	2021-11-18	3.53	3.78	3.54	3.8	0.008	0.97	0.0	0.05	13.18	0.01	2.055	3.75	0.43	4.9	95.1	0.0	-2.40	0.56	0.74	2.58	3.8	0.004	0.68	0.0	0.04	14.48	0.00	2.547	9.67	2.13	4.4	95.6	0.0	1.42	0.53	0.60	0.78	1.35	5054	622	6	0	16	0	0	logfile
✔	7W0L	32243	2025-06-13	2021-11-18	3.57	2.46	3.66	2.2	0.010	0.94	0.0	0.05	15.21	0.00	1.891	13.94	0.08	8.6	91.3	0.1	-3.27	0.76	0.78	2.29	2.2	0.003	0.69	0.0	0.04	16.68	0.00	2.446	7.87	3.12	5.4	94.5	0.1	-0.60	0.46	0.75	0.77	2.19	11526	1455	8	0	2	0	0	logfile
✔	7W0A	32236	2025-06-23	2021-11-18	3.12	3.32	—	3.3	0.004	0.53	0.0	0.04	15.86	0.00	2.186	7.03	0.00	3.0	97.0	0.0	0.62	0.74	0.81	2.98	3.3	0.002	0.47	0.0	0.04	16.94	0.00	2.545	5.13	0.97	2.5	97.5	0.0	0.95	0.45	0.77	0.85	2.46	26898	2988	8	126	0	0	0	logfile
✔	7SVA	25446	2025-06-05	2021-11-18	3.26	3.94	3.29	3.3	0.003	0.60	0.0	0.04	15.80	0.01	2.078	8.79	0.29	5.6	94.4	0.0	-0.44	0.79	0.72	3.06	3.3	0.003	0.57	0.0	0.04	16.51	0.00	2.304	7.94	0.58	4.9	95.1	0.0	0.05	1.89	0.90	0.87	2.33	6515	792	3	11	1	0	0	logfile
✔	7W0E	32240	2025-06-13	2021-11-18	4.03	3.95	—	3.8	0.003	0.59	0.0	0.04	17.35	0.00	2.094	13.92	0.00	4.8	95.1	0.1	-0.82	0.86	0.75	—	3.8	0.003	0.64	0.0	0.04	17.45	0.00	2.042	11.61	0.00	4.6	95.4	0.1	-0.92	0.40	0.86	0.75	—	14850	1557	5	105	4	0	0	logfile
✔	7W0D	32239	2025-06-18	2021-11-18	4.18	4.33	—	3.7	0.002	0.58	0.0	0.04	16.44	0.00	2.067	15.76	0.05	5.0	95.0	0.0	-0.30	0.91	0.80	—	3.7	0.003	0.62	0.0	0.04	16.49	0.00	1.971	11.85	0.05	4.8	95.2	0.0	-0.19	0.39	0.91	0.81	—	20322	2233	8	104	4	0	0	logfile
✔	7W02	32234	2025-06-11	2021-11-17	3.3	3.44	—	3.4	0.007	0.89	0.0	0.05	15.17	0.00	1.892	7.36	0.23	10.9	89.1	0.1	-3.18	0.68	0.87	2.65	3.4	0.002	0.63	0.0	0.04	15.98	0.00	2.017	4.15	1.48	7.5	92.4	0.1	-0.91	0.35	0.68	0.87	1.84	12326	1566	2	0	6	0	0	logfile

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