Table showing results for August 2025

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	9o10	49993	2025-08-24	2025-04-03	3.0	3.74	3.14	3.5	0.003	0.46	0.0	0.04	9.24	0.00	2.209	4.31	0.23	1.9	98.1	0.0	2.37	0.64	0.84	3.37	3.6	0.004	0.78	0.0	0.04	14.81	0.01	2.231	5.76	2.00	1.8	98.2	0.0	3.13	1.33	0.53	0.80	3.12	16488	1044	4	0	0	0	8360	logfile
✔	9o12	49995	2025-08-24	2025-04-03	4.3	5.06	4.45	4.6	0.003	0.47	0.0	0.04	10.08	0.00	2.105	4.26	1.19	4.3	95.7	0.0	1.53	0.55	0.66	—	4.6	0.003	0.57	0.0	0.04	11.44	0.00	2.082	7.24	0.11	4.8	95.2	0.0	1.29	1.09	0.55	0.76	—	17136	1044	4	0	0	0	8772	logfile
✔	9o11	49994	2025-08-24	2025-04-03	3.3	4.08	3.43	3.9	0.004	0.49	0.0	0.04	13.21	0.00	2.017	3.15	0.11	2.0	98.0	0.0	1.71	0.64	0.84	2.47	3.9	0.003	0.55	0.0	0.03	15.01	0.00	2.336	3.68	0.97	1.9	98.1	0.0	3.19	0.76	0.59	0.85	2.16	17136	1044	4	0	0	0	8772	logfile
✔	9o0i	49973	2025-08-22	2025-04-02	3.86	4.09	3.82	4.1	0.005	0.98	1.0	0.05	18.50	0.01	2.268	4.95	0.13	6.7	93.3	0.0	-2.62	0.65	0.84	1.93	4.1	0.003	0.64	0.0	0.04	18.42	0.00	2.374	9.68	3.17	6.8	93.0	0.1	-0.60	0.91	0.65	0.85	1.74	6677	825	3	0	0	0	0	logfile
✔	9UAV	63996	2025-08-23	2025-04-01	3.7	3.91	3.71	3.9	0.007	1.17	1.0	0.06	18.88	0.01	2.161	9.27	0.66	4.1	95.8	0.1	0.46	0.52	0.57	0.85	3.8	0.004	0.83	0.0	0.05	16.57	0.00	2.456	10.90	3.83	5.1	94.7	0.2	0.95	1.22	0.54	0.59	1.04	12831	1875	12	0	20	0	0	logfile
✔	9QQD	53298	2025-08-22	2025-03-31	3.1	4.12	3.12	3.7	0.014	1.96	9.0	0.09	20.81	0.04	2.429	8.02	13.84	4.7	94.5	0.9	-3.10	0.93	0.90	1.96	3.7	0.002	0.57	0.0	0.04	18.32	0.00	2.613	6.59	2.73	2.9	97.1	0.0	2.84	0.75	0.89	0.84	1.48	4592	579	1	0	0	0	0	logfile
✔	9UAA	63983	2025-08-24	2025-03-31	2.22	2.27	2.14	2.2	0.003	0.66	0.0	0.05	13.04	0.00	2.110	4.47	0.00	3.6	96.4	0.0	0.08	0.70	0.84	4.72	2.2	0.003	0.83	1.0	0.05	14.58	0.00	2.347	3.67	1.01	3.0	97.0	0.0	0.18	0.25	0.72	0.86	4.40	15994	2013	18	0	9	340	0	logfile
✔	9UA9	63982	2025-08-24	2025-03-31	1.99	2.05	1.92	2.0	0.003	0.57	0.0	0.05	10.73	0.00	2.177	1.58	0.11	1.9	98.1	0.0	0.81	0.75	0.86	6.43	2.0	0.002	0.58	0.0	0.05	12.81	0.00	2.494	1.55	0.56	1.9	98.1	0.0	0.87	0.78	0.79	0.90	6.14	16357	2031	24	0	15	553	0	logfile
✔	9UA2	63976	2025-08-23	2025-03-31	2.83	3.08	2.92	3.1	0.003	0.60	0.0	0.04	19.48	0.00	2.202	8.28	0.40	4.6	95.1	0.3	-0.36	0.65	0.78	3.63	3.1	0.004	0.62	0.0	0.04	20.17	0.00	2.436	7.06	2.47	5.2	94.6	0.2	-0.53	0.98	0.69	0.81	3.27	14114	1408	6	127	4	0	0	logfile
✔	9QPV	53284	2025-08-22	2025-03-29	3.3	3.74	3.29	3.6	0.003	0.76	0.0	0.05	13.05	0.01	2.194	6.81	0.00	5.5	94.5	0.0	-2.28	0.74	0.66	0.90	3.6	0.004	0.84	0.0	0.05	16.14	0.01	2.479	18.18	2.39	4.4	95.6	0.0	-0.38	2.25	0.78	0.77	0.73	7776	1000	1	0	0	0	0	logfile
✔	9U9B	63960	2025-08-22	2025-03-27	3.25	2.52	3.06	3.2	0.003	0.59	0.0	0.04	13.35	0.01	2.186	8.84	0.00	5.0	95.0	0.0	0.54	0.71	0.79	2.99	3.2	0.003	0.67	0.0	0.04	15.60	0.00	2.542	10.10	4.39	3.5	96.2	0.2	0.82	0.98	0.73	0.84	2.44	3261	439	4	0	0	0	0	logfile
✔	9NY6	49925	2025-08-22	2025-03-26	3.2	4.11	2.79	3.4	0.003	0.61	0.0	0.05	12.37	0.01	2.186	10.60	0.00	5.0	94.9	0.1	-0.97	0.60	0.83	2.04	3.5	0.003	0.65	0.0	0.05	13.53	0.00	2.344	9.07	3.35	4.9	94.9	0.2	-0.94	0.49	0.60	0.84	2.57	6681	882	3	0	0	0	0	logfile
✔	9NY2	49916	2025-08-24	2025-03-26	2.6	3.97	2.24	2.4	0.003	0.53	0.0	0.04	17.66	0.00	2.136	5.22	1.63	3.5	96.1	0.4	0.29	0.47	0.91	3.23	2.5	0.004	0.55	0.0	0.04	17.78	0.00	2.489	3.44	1.47	4.2	95.4	0.4	0.12	1.01	0.47	0.91	3.05	17199	2219	7	0	0	0	0	logfile
✔	9NXP	49910	2025-08-22	2025-03-25	4.5	4.55	3.80	3.8	0.003	0.73	0.0	0.04	13.06	0.01	2.094	16.49	0.00	7.1	92.9	0.0	0.01	0.51	0.72	—	3.8	0.003	0.69	0.0	0.04	13.62	0.01	2.578	10.67	0.00	9.3	90.7	0.0	0.16	1.06	0.51	0.70	—	5304	684	3	0	0	0	0	logfile
✔	9NXK	49902	2025-08-22	2025-03-25	3.0	4.23	2.94	2.5	0.003	0.57	0.0	0.04	13.78	0.01	2.189	14.94	0.20	5.0	95.0	0.0	-1.64	0.45	0.84	2.61	2.6	0.004	0.59	0.0	0.04	14.17	0.00	2.595	11.59	0.61	4.7	95.3	0.0	-0.66	0.37	0.45	0.88	3.05	4653	642	3	0	0	0	0	logfile
✔	9NWE	49876	2025-08-25	2025-03-22	3.2	3.55	3.34	3.4	0.013	1.45	7.0	0.07	14.05	0.01	1.463	17.89	2.23	3.3	96.7	0.0	0.40	0.66	0.66	1.12	3.4	0.003	0.65	0.0	0.04	15.48	0.00	2.390	9.82	1.98	2.3	97.7	0.0	1.86	0.84	0.71	0.80	1.25	29288	3698	10	0	10	0	0	logfile
✔	9U5A	63867	2025-08-22	2025-03-21	2.98	3.39	3.06	3.3	0.010	1.35	1.0	0.09	11.09	0.01	2.387	7.80	0.00	3.1	96.9	0.0	0.38	0.51	0.76	1.20	3.3	0.002	0.55	0.0	0.04	15.03	0.00	2.637	6.88	1.19	1.2	98.8	0.0	3.45	1.13	0.47	0.74	1.20	3268	432	2	0	1	0	0	logfile
✔	9QLS	53233	2025-08-23	2025-03-21	3.54	4.01	3.59	3.6	0.004	0.98	0.0	0.05	15.52	0.01	2.406	2.68	1.57	4.8	95.2	0.1	-2.53	0.76	0.70	1.47	3.6	0.004	0.77	0.0	0.05	16.38	0.00	2.251	12.56	2.73	5.4	94.6	0.0	-1.13	1.08	0.79	0.76	1.55	11100	1370	2	0	6	0	0	logfile
✔	9U5G	63872	2025-08-23	2025-03-21	2.66	2.88	2.67	2.9	0.009	0.64	0.0	0.04	14.00	0.00	2.111	3.04	0.90	3.5	96.5	0.0	0.73	0.42	0.68	3.76	2.9	0.003	0.58	0.0	0.04	15.39	0.00	2.484	3.81	2.00	3.3	96.7	0.0	0.68	1.30	0.71	0.88	3.04	14765	1900	13	0	8	7	0	logfile
✔	9QLN	53229	2025-08-23	2025-03-21	3.2	3.89	3.28	3.6	0.005	1.00	0.0	0.06	15.29	0.01	2.362	3.06	1.34	4.4	95.5	0.1	-1.72	0.79	0.73	1.11	3.6	0.004	0.92	1.0	0.05	15.85	0.00	2.210	10.48	1.84	5.1	94.9	0.1	-0.48	0.46	0.79	0.75	1.01	10829	1340	2	0	6	0	0	logfile

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