Table showing results for August 2025

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	9U5G	63872	2025-08-23	2025-03-21	2.66	2.88	2.67	2.9	0.009	0.64	0.0	0.04	14.00	0.00	2.111	3.04	0.90	3.5	96.5	0.0	0.73	0.42	0.68	3.76	2.9	0.003	0.58	0.0	0.04	15.39	0.00	2.484	3.81	2.00	3.3	96.7	0.0	0.68	1.30	0.71	0.88	3.04	14765	1900	13	0	8	7	0	logfile
✔	9QLU	53234	2025-08-22	2025-03-21	2.54	2.32	2.28	2.3	0.004	0.68	0.0	0.04	12.32	0.01	2.367	3.25	0.00	3.4	96.6	0.0	-1.75	0.43	0.88	8.63	2.3	0.003	0.57	0.0	0.04	14.88	0.00	2.660	3.68	2.50	2.2	97.8	0.0	-1.88	0.53	0.41	0.88	8.40	2360	330	5	0	0	0	0	logfile
✔	9QLE	53225	2025-08-23	2025-03-20	2.8	3.57	2.84	3.3	0.005	0.97	0.0	0.05	15.67	0.01	2.373	1.71	1.52	3.2	96.8	0.0	-1.38	0.82	0.84	3.06	3.3	0.003	0.59	0.0	0.04	15.87	0.00	2.259	6.37	1.99	3.2	96.8	0.0	0.24	0.36	0.79	0.81	2.99	13820	1695	2	0	12	0	0	logfile
✔	9U4Y	63858	2025-08-24	2025-03-20	2.67	3.03	2.79	3.0	0.009	0.71	1.0	0.04	15.13	0.00	2.279	7.47	1.16	3.3	96.7	0.0	0.28	0.58	0.80	3.52	3.0	0.007	0.56	0.0	0.04	16.57	0.00	2.145	5.86	1.80	2.8	97.2	0.0	1.16	0.75	0.58	0.82	3.85	17343	1118	7	0	1	0	8578	logfile
✔	9NVF	49834	2025-08-27	2025-03-20	3.65	4.42	3.67	3.9	0.003	0.46	1.0	0.05	9.74	0.01	2.152	6.22	0.00	3.4	96.6	0.0	0.99	0.77	0.69	1.04	3.9	0.003	0.55	0.0	0.05	12.59	0.00	2.321	5.65	0.75	4.7	95.2	0.0	0.32	0.80	0.79	0.74	1.36	46251	2908	26	0	0	0	23629	logfile
✔	9QLF	53226	2025-08-23	2025-03-20	2.65	3.42	2.77	3.1	0.005	0.90	0.0	0.05	15.71	0.01	2.351	1.76	1.33	3.3	96.7	0.0	-1.56	0.81	0.86	3.50	3.1	0.003	0.59	0.0	0.04	15.76	0.00	2.217	5.96	2.06	2.9	97.1	0.0	0.16	0.32	0.78	0.82	3.44	13762	1687	2	0	12	0	0	logfile
✔	9U55	63862	2025-08-22	2025-03-20	3.17	3.49	3.11	3.4	0.011	1.38	1.0	0.09	12.44	0.01	2.344	5.98	0.53	3.3	96.7	0.0	-1.06	0.54	0.75	2.38	3.4	0.004	0.68	0.0	0.04	15.24	0.00	2.538	6.66	2.93	1.0	99.0	0.0	2.36	1.26	0.63	0.84	2.97	3707	496	2	0	1	0	0	logfile
✔	9U4U	63855	2025-08-22	2025-03-20	3.2	3.47	2.64	3.5	0.003	0.59	0.0	0.04	16.30	0.00	2.295	16.77	0.00	11.1	88.9	0.0	-3.18	0.56	0.77	4.35	3.5	0.005	0.68	0.0	0.04	17.71	0.00	2.530	12.90	8.99	13.0	87.0	0.0	-4.09	2.18	0.57	0.79	4.73	3204	450	3	0	0	0	0	logfile
✔	9QKV	53222	2025-08-23	2025-03-20	2.74	3.47	2.83	3.2	0.005	0.97	0.0	0.05	15.62	0.01	2.345	2.01	0.73	3.9	96.1	0.1	-1.33	0.80	0.85	3.21	3.2	0.005	0.63	0.0	0.04	15.84	0.00	2.191	7.27	1.73	4.1	95.9	0.1	-0.10	0.34	0.75	0.80	3.32	13764	1688	2	0	12	0	0	logfile
✔	9NVC	49832	2025-08-24	2025-03-20	2.6	3.07	2.69	3.0	0.004	0.64	0.0	0.05	12.81	0.00	2.235	4.14	0.00	1.7	98.3	0.0	1.03	0.79	0.82	2.53	3.0	0.003	0.67	0.0	0.05	17.18	0.00	2.496	6.75	3.26	1.5	98.5	0.0	1.79	1.59	0.75	0.82	2.59	22488	2904	24	0	0	0	0	logfile
✔	9U4W	63857	2025-08-24	2025-03-20	3.18	3.62	3.33	3.6	0.003	0.56	1.0	0.04	13.61	0.00	2.264	8.62	0.11	5.1	94.9	0.0	0.08	0.57	0.70	2.76	3.5	0.004	0.57	0.0	0.04	16.06	0.00	2.217	8.05	2.66	5.9	94.1	0.0	0.53	0.84	0.60	0.77	2.70	17301	1127	7	0	1	0	8492	logfile
✔	9NV3	49827	2025-08-24	2025-03-20	4.45	5.59	4.41	4.3	0.022	2.14	15.0	0.12	16.92	0.02	2.253	5.09	3.51	14.0	82.8	3.2	-4.24	0.77	0.53	—	4.3	0.017	0.89	2.0	0.05	14.94	0.01	2.107	24.30	0.00	14.7	85.0	0.3	-3.35	1.49	0.83	0.67	—	17287	1065	2	0	0	0	8603	logfile
✔	9U48	63834	2025-08-22	2025-03-19	2.99	2.34	2.98	2.1	0.006	0.75	0.0	0.05	20.56	0.00	2.204	15.47	0.00	6.6	93.4	0.0	-1.25	0.71	0.68	3.31	2.1	0.005	0.64	0.0	0.04	20.41	0.00	2.520	10.79	2.94	5.1	94.9	0.0	-0.80	0.47	0.72	0.71	2.88	3790	335	3	49	1	0	0	logfile
✔	9U47	63833	2025-08-22	2025-03-19	3.4	2.62	3.36	1.9	0.006	0.90	1.0	0.05	16.67	0.01	2.256	8.22	0.00	5.6	94.4	0.0	-2.80	0.66	0.57	2.51	1.9	0.003	0.64	0.0	0.04	18.63	0.00	2.400	15.65	2.15	3.3	96.7	0.0	0.29	1.34	0.69	0.64	1.83	3374	308	2	42	0	0	0	logfile
✔	9NU1	49792	2025-08-22	2025-03-19	3.6	4.02	2.94	4.0	0.004	0.87	0.0	0.05	20.81	0.00	2.475	8.03	1.83	4.2	95.8	0.0	-1.71	0.77	0.79	2.04	3.9	0.005	0.85	0.0	0.05	16.83	0.00	2.521	9.43	6.97	4.8	95.2	0.0	-1.50	1.17	0.78	0.80	2.10	5092	628	10	0	15	0	0	logfile
✔	9U3Q	63824	2025-08-22	2025-03-18	3.37	2.34	3.33	3.2	0.003	0.62	0.0	0.04	16.93	0.00	2.109	9.68	0.00	1.7	98.1	0.2	2.18	0.63	0.61	1.46	3.0	0.003	0.58	0.0	0.04	17.66	0.00	2.608	10.58	3.07	1.9	98.1	0.0	3.44	0.94	0.64	0.61	1.58	3853	482	1	0	0	0	0	logfile
✔	9U3R	63825	2025-08-22	2025-03-18	3.23	2.34	3.32	2.9	0.002	0.57	0.0	0.04	17.68	0.00	2.172	9.03	0.14	1.5	98.5	0.0	0.94	0.69	0.65	1.15	2.9	0.004	0.67	0.0	0.04	18.05	0.00	2.522	11.97	4.02	2.4	97.6	0.0	1.17	1.09	0.72	0.69	1.20	6690	847	1	0	0	0	0	logfile
✔	9U3S	63826	2025-08-22	2025-03-18	3.1	2.29	3.08	2.9	0.003	0.62	0.0	0.04	18.34	0.00	2.147	12.25	1.09	0.7	99.3	0.0	0.92	0.76	0.76	1.73	2.9	0.003	0.60	0.0	0.04	18.54	0.00	2.607	10.48	4.62	1.7	98.3	0.0	2.65	0.43	0.75	0.76	2.00	3384	425	1	0	0	0	0	logfile
✔	9U3V	63828	2025-08-22	2025-03-18	3.2	2.32	3.38	3.0	0.002	0.46	0.0	0.04	17.95	0.00	2.211	7.91	0.00	1.7	98.3	0.0	0.67	0.75	0.74	2.00	3.0	0.003	0.56	0.0	0.04	18.44	0.00	2.585	9.08	2.96	2.7	97.3	0.0	3.26	1.05	0.75	0.75	2.13	3401	426	1	0	0	0	0	logfile
✔	9U3U	63827	2025-08-22	2025-03-18	3.5	2.37	3.42	3.1	0.002	0.51	0.0	0.04	17.92	0.00	2.197	9.54	0.41	2.2	97.8	0.0	0.92	0.69	0.67	0.98	3.0	0.003	0.64	0.0	0.04	18.45	0.00	2.518	10.14	4.29	2.4	97.6	0.0	1.73	0.50	0.70	0.67	1.02	6702	848	1	0	0	0	0	logfile

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