Table showing results for August 2025

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	9U3V	63828	2025-08-22	2025-03-18	3.2	2.32	3.38	3.0	0.002	0.46	0.0	0.04	17.95	0.00	2.211	7.91	0.00	1.7	98.3	0.0	0.67	0.75	0.74	2.00	3.0	0.003	0.56	0.0	0.04	18.44	0.00	2.585	9.08	2.96	2.7	97.3	0.0	3.26	1.05	0.75	0.75	2.13	3401	426	1	0	0	0	0	logfile
✔	9MC8	63792	2025-08-22	2025-03-17	3.31	3.92	3.44	3.9	0.005	0.85	0.0	0.04	15.34	0.01	2.353	11.30	0.26	3.3	96.7	0.0	0.19	0.43	0.67	1.71	3.9	0.003	0.64	0.0	0.04	15.80	0.01	2.560	5.65	2.31	1.9	98.1	0.0	2.84	0.48	0.49	0.73	1.98	3721	489	2	0	1	0	0	logfile
✘	9NSV	49753	2025-08-24	2025-03-17	2.19	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	17487	1996	12	0	8	1394	0	logfile
✔	9QHH	53169	2025-08-24	2025-03-15	3.1	3.65	—	3.3	0.006	0.81	0.0	0.05	17.22	0.01	2.114	15.67	0.84	3.7	96.2	0.2	-0.12	0.79	0.72	1.48	3.3	0.003	0.64	0.0	0.04	17.54	0.00	2.324	9.47	2.73	2.8	97.2	0.0	0.67	1.18	0.80	0.76	1.47	22339	2803	1	0	0	0	0	logfile
✔	9NR9	49726	2025-08-23	2025-03-14	4.22	4.46	4.22	4.3	0.003	0.86	0.0	0.05	12.70	0.00	2.281	6.21	0.00	5.2	94.8	0.0	-1.29	0.69	0.72	—	4.3	0.003	0.67	0.0	0.04	12.77	0.00	2.461	10.09	0.08	5.1	94.9	0.0	0.54	0.54	0.70	0.74	—	13679	1865	10	0	4	0	0	logfile
✔	9MAU	63758	2025-08-22	2025-03-14	2.87	3.31	2.79	3.3	0.010	1.39	0.0	0.09	12.11	0.01	2.403	4.62	0.00	2.2	97.8	0.0	-0.76	0.43	0.69	2.53	3.3	0.003	0.59	0.0	0.04	15.09	0.00	2.609	4.87	1.46	1.8	98.2	0.0	2.26	1.07	0.47	0.73	2.05	3874	506	1	0	0	0	0	logfile
✔	9NR7	49724	2025-08-24	2025-03-14	4.18	4.40	4.16	4.3	0.003	0.82	0.0	0.05	12.99	0.00	2.228	6.44	0.07	5.8	94.2	0.0	-1.52	0.65	0.65	—	4.3	0.004	0.72	0.0	0.04	13.12	0.00	2.475	13.57	0.00	6.3	93.7	0.0	-0.80	0.72	0.68	0.71	—	15553	1958	12	0	235	0	0	logfile
✔	9QH3	53153	2025-08-25	2025-03-14	2.4	3.18	2.71	3.1	0.005	0.83	0.0	0.05	15.21	0.04	2.182	5.20	0.37	3.7	96.3	0.0	-1.39	0.70	0.81	3.72	3.1	0.003	0.56	0.0	0.04	16.00	0.00	2.379	2.46	0.67	2.4	97.6	0.0	1.90	0.57	0.71	0.83	4.30	25636	1684	10	3	0	45	12816	logfile
✔	9NR8	49725	2025-08-23	2025-03-14	3.53	3.82	3.59	3.8	0.004	0.72	1.0	0.05	17.14	0.01	1.787	4.85	0.15	5.5	94.5	0.0	-0.94	0.72	0.77	2.04	3.8	0.005	0.82	0.0	0.04	16.00	0.01	2.388	5.83	2.55	5.4	94.6	0.0	-0.13	0.42	0.74	0.80	2.32	14576	1958	18	0	22	0	0	logfile
✔	9QH0	53151	2025-08-23	2025-03-14	2.52	3.21	2.61	3.0	0.005	0.70	0.0	0.05	14.00	0.02	2.199	7.21	0.00	2.6	97.4	0.0	0.54	0.77	0.86	3.35	3.1	0.003	0.53	0.0	0.04	16.04	0.00	2.503	5.01	0.95	2.0	98.0	0.0	2.46	0.72	0.74	0.86	3.68	12946	1702	6	0	0	7	0	logfile
✔	9NR6	49723	2025-08-24	2025-03-14	3.26	3.49	3.31	3.5	0.003	0.62	0.0	0.05	16.71	0.00	2.281	4.39	0.11	3.4	96.6	0.0	-0.70	0.68	0.78	3.08	3.5	0.003	0.60	0.0	0.04	15.32	0.00	2.242	4.77	2.25	4.1	95.9	0.0	-0.39	1.39	0.71	0.83	3.18	19239	2512	26	0	36	0	0	logfile
✔	9NRA	49727	2025-08-24	2025-03-14	4.18	4.45	4.22	4.4	0.004	0.89	0.0	0.05	13.30	0.00	2.160	7.54	0.00	5.8	94.2	0.0	-1.74	0.67	0.70	—	4.4	0.005	0.77	0.0	0.04	13.33	0.00	2.445	15.26	0.00	6.6	93.3	0.1	-0.59	1.96	0.70	0.76	—	15598	1964	12	0	235	0	0	logfile
✔	9M9V	63741	2025-08-22	2025-03-13	3.31	3.80	3.40	3.7	0.012	1.40	2.0	0.09	12.13	0.01	2.402	2.78	0.51	2.3	97.7	0.0	-0.35	0.53	0.74	2.36	3.7	0.003	0.63	0.0	0.04	15.88	0.00	2.346	7.69	1.78	2.5	97.3	0.2	2.67	1.99	0.52	0.75	1.50	3765	496	2	0	1	0	0	logfile
✔	9QG1	53127	2025-08-24	2025-03-13	3.3	3.70	3.41	3.6	0.004	0.67	0.0	0.05	19.11	0.00	1.372	6.82	3.69	4.3	95.0	0.7	1.97	0.67	0.65	1.12	3.6	0.003	0.55	0.0	0.04	18.74	0.00	1.237	6.20	2.70	3.0	97.0	0.0	2.95	1.05	0.75	0.79	1.62	21968	2736	32	0	48	0	0	logfile
✔	9M9Y	63744	2025-08-22	2025-03-13	3.04	3.54	3.11	3.5	0.009	1.35	1.0	0.09	10.66	0.01	2.386	7.64	0.00	3.0	97.0	0.0	0.31	0.50	0.77	1.76	3.5	0.003	0.59	0.0	0.04	13.69	0.00	2.584	4.83	1.77	1.3	98.7	0.0	2.88	1.39	0.47	0.75	1.33	3668	475	1	0	0	0	0	logfile
✔	9NQU	49676	2025-08-24	2025-03-13	3.16	3.46	—	3.1	0.005	0.79	0.0	0.07	28.78	0.00	2.012	38.25	1.83	7.7	92.3	0.0	0.16	0.78	0.70	0.48	3.1	0.005	0.83	1.0	0.04	28.03	0.00	2.010	12.21	3.95	4.6	95.4	0.0	1.27	1.07	0.81	0.74	0.65	17358	1229	12	370	3	0	0	logfile
✔	9NQD	49649	2025-08-26	2025-03-12	3.3	4.38	3.74	18.0	0.016	2.96	72.0	0.15	17.39	0.01	2.307	5.98	0.00	3.0	97.0	0.0	-4.31	0.55	0.34	1.32	16.0	0.004	1.11	0.0	0.05	17.48	0.00	1.847	29.04	3.64	17.2	82.6	0.2	-6.31	1.77	0.69	0.61	0.64	33612	2460	12	0	0	0	16380	logfile
✔	9M84	63701	2025-08-25	2025-03-11	3.61	3.95	3.79	3.8	0.004	0.78	0.0	0.04	17.91	0.01	1.876	6.19	0.41	7.6	92.3	0.1	-1.95	0.74	0.67	0.95	3.8	0.003	0.74	0.0	0.05	18.79	0.01	1.972	13.04	2.31	5.3	94.7	0.0	-1.19	0.99	0.74	0.66	0.77	24018	2931	8	58	3	0	0	logfile
✘	9NPY	49636	2025-08-25	2025-03-11	2.1	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	25171	1877	36	483	32	827	0	logfile
✔	9QFH	53109	2025-08-25	2025-03-11	2.9	3.06	—	1.8	0.005	0.62	0.0	0.04	12.86	0.01	2.219	6.05	0.29	2.1	97.9	0.0	1.12	0.77	0.65	2.28	1.8	0.003	0.52	0.0	0.04	15.18	0.00	2.504	4.60	0.74	1.8	98.2	0.0	2.12	1.37	0.87	0.89	3.53	29625	3759	8	0	0	0	0	logfile

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