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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✘ | 8iZY | 35877 | 2025-06-15 | 2023-04-09 | 2.5 | 2.54 | 2.78 | 2.6 | 0.006 | 0.65 | 0.0 | 0.03 | 18.00 | 0.00 | 1.956 | 7.21 | 0.71 | 3.2 | 96.8 | 0.0 | 2.64 | 0.48 | 0.78 | 2.29 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 16776 | 1004 | 8 | 0 | 8 | 0 | 8360 | logfile |
✘ | 8oPE | 17050 | 2025-06-28 | 2023-04-07 | 3.09 | 3.18 | 3.17 | 3.1 | 0.005 | 0.69 | 0.0 | 0.04 | 18.43 | 0.01 | 2.456 | 5.64 | 0.24 | 1.1 | 98.9 | 0.0 | 0.16 | 0.46 | 0.79 | 2.12 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 33411 | 3906 | 42 | 105 | 0 | 0 | 0 | logfile |
✘ | 8oPN | 17077 | 2025-06-25 | 2023-04-07 | 4.7 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 28543 | 3555 | 13 | 0 | 40 | 0 | 0 | logfile |
✘ | 8oPM | 17076 | 2025-06-26 | 2023-04-07 | 3.7 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 29802 | 3582 | 42 | 0 | 123 | 0 | 0 | logfile |
✘ | 8oPo | 17078 | 2025-06-25 | 2023-04-07 | 3.6 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 28965 | 3585 | 18 | 0 | 57 | 0 | 0 | logfile |
✘ | 8iYH | 35822 | 2025-06-06 | 2023-04-04 | 3.3 | 3.51 | 3.28 | 3.5 | 0.006 | 0.74 | 0.0 | 0.05 | 13.48 | 0.01 | 2.204 | 5.25 | 1.08 | 2.3 | 97.7 | 0.0 | 0.53 | 0.69 | 0.80 | 3.40 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 8035 | 1119 | 6 | 0 | 1 | 0 | 0 | logfile |
✘ | 8oLE | 16956 | 2025-06-15 | 2023-03-30 | 4.4 | 4.72 | 4.03 | 5.7 | 0.005 | 0.90 | 2.0 | 0.06 | 13.98 | 0.01 | 1.554 | 30.06 | 0.15 | 12.6 | 87.1 | 0.3 | -3.85 | 0.74 | 0.64 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 17757 | 2254 | 3 | 0 | 0 | 0 | 0 | logfile |
✘ | 8oJD | 16912 | 2025-06-07 | 2023-03-24 | 2.46 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 8674 | 976 | 5 | 45 | 2 | 0 | 0 | logfile |
✘ | 8oJ7 | 16907 | 2025-06-10 | 2023-03-24 | 2.46 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 12026 | 1355 | 5 | 67 | 3 | 0 | 0 | logfile |
✘ | 8iU0 | 35713 | 2025-06-06 | 2023-03-23 | 2.66 | 2.91 | 2.66 | 2.9 | 0.015 | 1.60 | 0.0 | 0.08 | 18.62 | 0.02 | 2.258 | 6.64 | 0.90 | 3.6 | 96.4 | 0.0 | -1.94 | 0.54 | 0.80 | 5.22 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 7062 | 765 | 6 | 0 | 45 | 78 | 0 | logfile |
✘ | 8oi6 | 16887 | 2025-06-10 | 2023-03-22 | 3.59 | 3.91 | 3.62 | 3.8 | 0.005 | 0.65 | 0.0 | 0.04 | 16.97 | 0.00 | 1.808 | 7.71 | 0.24 | 1.8 | 98.1 | 0.1 | 0.35 | 0.77 | 0.84 | 1.96 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 11573 | 1464 | 14 | 0 | 11 | 0 | 0 | logfile |
✘ | 8GKC | 40182 | 2025-06-13 | 2023-03-17 | 2.45 | 2.61 | 2.47 | 2.7 | 0.013 | 1.00 | 0.0 | 0.05 | 16.90 | 0.00 | 2.160 | 12.35 | 0.00 | 3.0 | 97.0 | 0.0 | -1.15 | 0.67 | 0.82 | 4.22 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 14616 | 1932 | 4 | 0 | 6 | 0 | 0 | logfile |
✘ | 8iPQ | 35640 | 2025-06-12 | 2023-03-14 | 3.5 | 3.94 | 3.69 | 3.8 | 0.004 | 0.77 | 2.0 | 0.05 | 16.07 | 0.01 | 2.209 | 16.79 | 0.61 | 7.2 | 92.7 | 0.1 | 0.55 | 0.64 | 0.80 | 0.45 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 14456 | 1996 | 4 | 0 | 0 | 0 | 0 | logfile |
✘ | 8Gi8 | 40062 | 2025-06-06 | 2023-03-13 | 2.88 | 3.11 | 2.77 | 3.1 | 0.012 | 1.16 | 0.0 | 0.09 | 26.08 | 0.00 | 1.935 | 11.74 | 0.00 | 2.1 | 97.9 | 0.0 | 1.50 | 0.58 | 0.78 | 3.81 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 6990 | 720 | 6 | 0 | 30 | 45 | 0 | logfile |
✘ | 8ioL | 35621 | 2025-06-23 | 2023-03-11 | 2.9 | 2.89 | 3.00 | 3.0 | 0.010 | 0.80 | 0.0 | 0.05 | 13.15 | 0.00 | 2.138 | 12.14 | 0.39 | 7.3 | 92.7 | 0.0 | -3.11 | 0.58 | 0.74 | 3.50 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 27556 | 3516 | 8 | 0 | 0 | 0 | 0 | logfile |
✘ | 8ioD | 35616 | 2025-06-06 | 2023-03-10 | 2.59 | 2.77 | 2.63 | 2.8 | 0.005 | 0.80 | 0.0 | 0.05 | 14.07 | 0.01 | 2.038 | 13.91 | 0.00 | 5.0 | 95.0 | 0.0 | -0.83 | 0.53 | 0.66 | 2.35 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 8061 | 1023 | 8 | 0 | 3 | 0 | 0 | logfile |
✘ | 8GE1 | 29952 | 2025-06-05 | 2023-03-06 | 3.4 | 3.78 | 3.54 | 3.8 | 0.003 | 0.51 | 0.0 | 0.04 | 12.49 | 0.00 | 2.203 | 5.64 | 0.00 | 2.2 | 97.8 | 0.0 | 1.67 | 0.71 | 0.85 | 3.09 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 6464 | 908 | 5 | 0 | 1 | 0 | 0 | logfile |
✘ | 8GAV | 29909 | 2025-06-16 | 2023-02-23 | 2.7 | 2.16 | 2.59 | 1.7 | 0.011 | 1.06 | 0.0 | 0.07 | 9.78 | 0.01 | 2.037 | 2.60 | 0.38 | 5.7 | 94.1 | 0.2 | -3.07 | 0.81 | 0.82 | 5.61 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 19088 | 2464 | 16 | 0 | 12 | 0 | 0 | logfile |
✘ | 8G9Y | 29882 | 2025-06-15 | 2023-02-22 | 4.28 | 5.75 | 4.38 | 4.3 | 0.008 | 1.40 | 4.0 | 0.07 | 19.16 | 0.01 | 2.193 | 9.13 | 0.00 | 9.6 | 90.3 | 0.1 | -4.83 | 0.87 | 0.84 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 17135 | 1983 | 53 | 0 | 120 | 0 | 0 | logfile |
✘ | 8iFF | 35415 | 2025-06-12 | 2023-02-17 | 3.1 | 3.34 | 3.19 | 3.3 | 0.007 | 0.63 | 0.0 | 0.04 | 18.24 | 0.01 | 2.153 | 9.51 | 0.27 | 5.2 | 94.8 | 0.0 | -0.43 | 0.66 | 0.81 | 1.60 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 13698 | 1736 | 4 | 0 | 2 | 0 | 0 | logfile |