Table showing results for June 2025

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✘	6W6V	21564	2025-06-21	2020-03-17	3.0	3.67	—	3.6	0.004	0.63	0.0	0.04	18.07	0.00	2.092	6.70	0.05	10.9	89.1	0.0	-2.45	0.70	0.81	2.34	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	24850	2306	11	294	0	0	0	logfile
✘	6M66	30114	2025-06-13	2020-03-13	4.1	4.40	—	4.2	0.005	1.08	0.0	0.06	16.35	0.01	2.231	9.42	0.00	8.8	91.2	0.0	-5.00	0.64	0.75	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	14938	1855	7	0	0	0	0	logfile
✘	6W4S	21539	2025-06-05	2020-03-11	3.2	3.63	—	3.6	0.004	0.57	0.0	0.04	14.38	0.00	2.176	8.10	4.45	5.6	94.4	0.0	-1.13	0.61	0.85	2.37	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	4986	650	3	0	0	0	0	logfile
✘	6Y9X	10740	2025-06-16	2020-03-10	4.4	4.70	4.27	4.4	0.012	1.07	3.0	0.11	13.05	0.01	1.344	12.07	0.45	2.0	98.0	0.0	-0.96	0.69	0.74	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	18418	2364	13	0	0	0	0	logfile
✘	6VY2	21456	2025-06-18	2020-02-25	4.86	6.05	—	5.2	0.009	1.36	0.0	0.08	22.30	0.00	2.056	18.44	4.96	5.7	93.8	0.5	-2.41	0.82	0.78	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	21426	2442	66	0	180	0	0	logfile
✘	6M1D	30041	2025-06-19	2020-02-25	4.5	6.53	—	4.6	0.008	1.21	0.0	0.06	18.16	0.01	2.043	20.67	9.51	9.3	89.8	0.9	-5.09	0.69	0.76	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	21776	2706	4	0	0	0	0	logfile
✘	6M15	30037	2025-06-20	2020-02-24	2.38	2.44	—	2.4	0.009	1.09	0.0	0.07	13.41	0.01	2.141	3.81	0.12	3.0	97.0	0.0	-2.43	0.80	0.87	5.62	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	23471	2895	30	0	72	71	0	logfile
✘	6LZ1	30021	2025-06-29	2020-02-17	3.2	3.36	3.55	3.3	0.009	0.61	0.0	0.05	15.47	0.00	2.099	11.03	2.52	7.7	92.3	0.0	-3.40	0.87	0.86	3.56	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	34492	4304	8	0	4	0	0	logfile
✘	6LXE	30006	2025-06-09	2020-02-10	4.2	4.23	—	4.0	0.017	0.78	0.0	0.04	15.29	0.00	2.030	16.92	0.14	8.7	91.3	0.0	-3.22	0.85	0.70	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	6519	813	4	0	2	0	0	logfile
✘	6VQW	21359	2025-06-18	2020-02-06	3.42	4.18	—	4.0	0.010	0.94	0.0	0.06	16.44	0.01	2.245	7.87	0.57	13.1	86.9	0.0	-5.04	0.78	0.79	1.92	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	20479	2648	11	40	0	0	0	logfile
✘	6VQH	21350	2025-06-16	2020-02-05	4.4	4.72	—	4.6	0.008	1.00	0.0	0.07	11.13	0.00	2.336	5.47	2.06	2.6	97.2	0.2	0.63	0.64	0.67	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	19338	2813	18	0	0	0	0	logfile
✘	6VPC	21308	2025-06-14	2020-02-03	3.2	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	16309	1633	9	154	5	0	0	logfile
✘	6VN0	21246	2025-06-17	2020-01-29	4.25	4.57	4.28	4.5	0.019	1.78	0.0	0.10	12.94	0.01	2.270	1.83	0.15	2.9	96.5	0.6	0.70	0.74	0.78	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	19962	2364	51	0	105	0	0	logfile
✘	6XXD	10647	2025-06-12	2020-01-27	3.22	2.31	—	3.1	0.007	1.05	0.0	0.06	11.45	0.00	2.647	2.40	0.00	5.7	94.3	0.0	-2.51	0.70	0.68	2.67	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	14896	2000	16	0	0	0	0	logfile
✘	6XXE	10648	2025-06-11	2020-01-27	3.49	2.31	—	3.3	0.007	1.09	0.0	0.06	11.82	0.00	2.471	6.11	2.27	11.0	89.0	0.0	-4.99	0.62	0.57	3.06	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	12816	1776	16	0	0	0	0	logfile
✘	6XWR	10636	2025-06-08	2020-01-24	3.22	3.96	—	3.7	0.008	0.75	0.0	0.05	12.81	0.00	2.122	11.13	0.00	5.7	94.3	0.0	-2.71	0.74	0.85	2.44	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	9564	1278	3	0	0	0	0	logfile
✘	6VL5	21230	2025-06-13	2020-01-22	4.5	4.57	4.20	4.4	0.019	1.75	0.0	0.10	11.99	0.01	2.242	0.64	0.20	1.2	98.8	0.0	0.88	0.79	0.80	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	15039	1719	42	0	105	0	0	logfile
✘	6VKS	21228	2025-06-21	2020-01-22	3.02	3.41	—	3.4	0.009	0.89	0.0	0.05	15.55	0.01	1.946	8.72	0.00	3.2	96.8	0.0	-3.88	0.74	0.79	2.05	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	24034	3131	6	0	18	0	0	logfile
✘	6Vi0	21208	2025-06-18	2020-01-10	3.43	3.96	3.49	3.8	0.009	1.68	3.0	0.10	17.43	0.01	2.241	6.11	1.23	7.8	92.0	0.2	-5.43	0.80	0.83	2.34	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	20823	2418	45	0	135	0	0	logfile
✘	6LN8	0927	2025-06-06	2019-12-28	3.1	3.26	3.34	3.3	0.011	0.56	0.0	0.04	12.81	0.00	2.051	6.74	0.00	3.0	97.0	0.0	-2.71	0.70	0.80	2.37	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	7739	1003	2	0	2	0	0	logfile

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