Table showing results for August 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✘	5U4J	8506	2024-08-04	2016-12-04	3.7	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	11360	524	10	339	0	0	0	logfile
✘	5U0A	8478	2024-08-10	2016-11-23	3.3	3.41	—	3.4	0.012	1.37	1.0	0.08	17.12	0.01	1.667	28.66	5.48	4.6	94.8	0.6	-2.78	0.65	0.74	1.61	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	28923	3329	14	144	0	0	0	logfile
✘	5SZS	8331	2024-08-11	2016-08-15	3.4	3.57	—	3.5	0.024	3.04	3.0	0.20	18.25	0.01	1.476	3.47	0.68	5.7	93.7	0.6	-0.27	0.85	0.83	2.56	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	30306	3531	69	0	222	0	0	logfile
✘	5A7U	3079	2024-08-02	2015-07-10	4.8	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	455	27	2	0	1	0	231	logfile
✘	3J9S	6272	2024-08-04	2015-02-19	2.6	3.83	—	3.5	0.020	1.80	0.0	0.12	18.55	0.01	0.216	25.10	6.86	1.3	98.0	0.8	1.97	0.68	0.76	3.15	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	9813	1191	6	0	15	315	0	logfile
✘	3J94	6204	2024-08-07	2014-12-05	4.2	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	2.31	—	—	—	2.7	0.003	0.80	0.0	0.04	14.91	0.01	1.999	14.79	0.05	5.0	94.5	0.6	0.47	—	0.85	0.80	—	21509	2895	12	0	11	0	0	logfile
✘	4V1A	2787	2024-08-11	2014-09-25	3.4	3.43	—	3.4	0.009	1.29	0.0	0.05	13.81	0.01	1.325	12.17	6.03	4.6	95.3	0.1	-2.62	0.37	0.78	1.69	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	31917	3843	27	0	94	0	0	logfile
✘	3J5Q	5776	2024-08-06	2013-10-28	3.8	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	18556	2448	12	0	44	0	292	logfile
✘	3A5X	1641	2024-08-02	2009-08-13	4.0	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	-4.41	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	3616	494	1	0	0	0	0	logfile

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