Table showing results for October 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✘	7TRD	26086	2024-10-12	2022-01-28	3.3	3.39	—	3.4	0.004	0.64	0.0	0.04	21.93	0.00	2.206	7.50	0.12	4.3	95.7	0.0	-0.10	0.79	0.84	2.70	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	12240	934	3	224	0	0	0	logfile
✘	7TMS	26001	2024-10-11	2022-01-20	3.8	3.09	—	3.3	0.004	0.66	0.0	0.04	12.97	0.00	2.199	14.14	0.08	3.3	96.6	0.0	1.17	0.82	0.78	2.20	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	57652	8226	32	0	1	0	0	logfile
✘	7TKT	25981	2024-10-12	2022-01-17	3.6	3.75	3.75	3.7	0.007	1.26	0.0	0.04	21.05	0.01	2.224	6.30	0.00	4.7	95.3	0.0	0.63	0.72	0.81	2.05	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	13252	1560	8	0	56	0	0	logfile
✘	7QTQ	14145	2024-10-11	2022-01-15	3.3	3.53	—	3.4	0.008	0.83	4.0	0.06	15.29	0.01	2.045	9.61	0.20	10.6	89.4	0.0	-2.27	0.72	0.82	2.74	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	54960	3577	10	0	24	0	26827	logfile
✘	7TGG	25881	2024-10-14	2022-01-07	4.1	4.67	—	4.4	0.004	0.71	0.0	0.05	11.74	0.01	2.070	15.91	0.00	7.4	92.6	0.0	-2.21	0.66	0.82	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	18255	2445	30	0	0	0	0	logfile
✘	7TFK	25875	2024-10-13	2022-01-06	3.25	3.36	—	3.3	0.003	0.65	0.0	0.04	16.01	0.01	2.092	10.12	0.13	3.2	96.8	0.0	0.18	0.69	0.63	1.06	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	14363	1680	14	45	9	0	0	logfile
✘	7TFL	25876	2024-10-13	2022-01-06	3.33	3.61	—	3.5	0.003	0.62	0.0	0.04	15.10	0.00	2.089	9.78	0.14	3.5	96.5	0.0	0.58	0.70	0.59	0.62	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	13690	1653	12	24	9	0	0	logfile
✘	7WiW	32538	2024-10-10	2022-01-05	3.12	3.47	—	3.4	0.006	0.99	1.0	0.05	14.75	0.01	1.891	8.72	1.03	7.1	92.3	0.6	-4.54	0.72	0.89	3.28	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	8603	1137	4	0	5	0	0	logfile
✘	7TCP	25816	2024-10-13	2021-12-27	3.84	3.97	—	3.9	0.002	0.37	0.0	0.03	9.57	0.00	2.327	4.21	1.26	2.8	97.2	0.0	2.66	0.70	0.81	2.29	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	14992	1912	12	0	12	0	0	logfile
✘	7Qo1	14080	2024-10-13	2021-12-23	4.4	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	14179	1694	9	62	1	0	0	logfile
✘	7TC0	25803	2024-10-13	2021-12-22	3.1	3.02	2.78	3.2	0.003	0.59	3.0	0.04	15.73	0.01	1.817	8.24	2.49	4.1	95.9	0.0	-1.78	0.74	0.81	1.67	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	13809	1781	4	0	11	0	0	logfile
✘	7QL3	14062	2024-10-09	2021-12-19	3.32	3.47	3.01	3.5	0.011	2.01	8.0	0.11	12.27	0.01	2.489	0.00	0.00	7.7	92.3	0.0	-3.47	0.46	0.82	4.29	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	3246	426	6	0	0	0	0	logfile
✘	7QKS	14050	2024-10-11	2021-12-18	3.1	3.39	3.08	3.3	0.005	0.74	0.0	0.05	14.59	0.01	2.210	4.65	0.10	1.8	98.2	0.0	0.65	0.75	0.87	2.33	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	9339	1199	2	0	1	0	0	logfile
✘	7T6o	25721	2024-10-15	2021-12-14	2.6	2.80	—	2.9	0.004	0.79	0.0	0.05	14.06	0.01	2.302	2.54	0.00	1.3	98.7	0.0	-1.56	0.67	0.84	3.82	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	19412	2424	4	0	0	0	0	logfile
✘	7T75	25734	2024-10-15	2021-12-14	2.7	2.93	2.74	3.0	0.022	1.83	12.0	0.14	11.79	0.01	2.271	1.14	0.90	2.5	96.7	0.8	0.58	0.76	0.83	4.56	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	19227	2316	36	0	87	0	0	logfile
✘	7T6L	25718	2024-10-15	2021-12-14	3.7	4.01	—	3.9	0.007	1.18	0.0	0.07	15.11	0.01	2.245	5.37	0.00	4.8	95.2	0.0	-4.03	0.68	0.82	1.57	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	19412	2424	4	0	0	0	0	logfile
✘	7T6X	25730	2024-10-11	2021-12-14	3.83	4.14	3.83	4.0	0.022	1.97	0.0	0.13	15.96	0.02	1.505	3.89	0.00	3.8	96.1	0.1	-0.16	0.77	0.82	2.77	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	9217	1140	19	0	37	0	0	logfile
✘	7QEN	13934	2024-10-15	2021-12-03	3.46	2.43	3.43	2.1	0.006	0.96	0.0	0.06	19.01	0.01	2.068	4.07	0.20	3.6	96.4	0.0	-3.65	0.74	0.75	2.13	—	—	—	—	—	—	—	—	—	—	—	—	—	0.97	—	—	—	1.77	19205	2209	8	70	20	0	0	logfile
✘	7W72	32336	2024-10-15	2021-12-02	3.1	2.86	—	3.0	0.007	0.91	7.0	0.06	15.94	0.01	2.032	14.54	0.39	8.3	91.7	0.0	-1.15	0.76	0.85	3.20	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	19188	2398	10	0	7	0	0	logfile
✘	7QDS	13925	2024-10-13	2021-11-30	3.8	3.53	3.57	3.7	0.005	0.86	1.0	0.05	14.59	0.01	2.067	14.28	0.00	5.7	94.3	0.0	-0.33	0.80	0.82	1.63	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	13798	1771	4	0	0	0	0	logfile

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