Table showing results for January 2025

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

Table content is loading...

Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	9BRA	44839	2025-01-21	2024-05-11	4.3	4.67	4.38	4.3	0.005	0.81	1.0	0.05	13.34	0.01	2.297	4.23	0.10	5.2	94.8	0.0	-0.52	0.70	0.71	—	4.3	0.004	0.71	0.0	0.04	13.73	0.00	2.324	14.85	0.00	4.6	95.4	0.0	0.47	1.26	0.73	0.81	—	66852	8554	33	0	0	0	0	logfile
✔	9BRT	44843	2025-01-21	2024-05-11	4.3	4.74	4.42	4.4	0.004	0.73	0.0	0.04	12.08	0.01	2.370	2.43	0.01	4.9	95.1	0.0	-0.02	0.71	0.73	—	4.4	0.003	0.63	0.0	0.04	12.96	0.00	2.340	11.36	0.00	4.3	95.7	0.0	1.14	0.47	0.73	0.81	—	66930	8563	33	0	0	0	0	logfile
✔	8ZHN	60109	2025-01-16	2024-05-11	4.12	4.26	4.04	3.8	0.003	0.65	0.0	0.05	12.78	0.01	2.211	6.61	0.66	4.0	96.0	0.0	-1.31	0.71	0.65	—	3.9	0.004	0.67	0.0	0.04	12.45	0.00	2.495	11.79	0.00	5.7	94.2	0.0	-0.59	1.62	0.75	0.75	—	45273	5829	30	0	57	0	0	logfile
✔	8ZHo	60110	2025-01-19	2024-05-11	3.54	3.81	3.50	3.8	0.003	0.54	0.0	0.04	15.24	0.00	2.273	4.14	0.62	3.8	96.2	0.0	-0.09	0.68	0.66	1.28	3.7	0.005	0.66	0.0	0.05	15.74	0.00	2.436	9.39	2.89	6.1	93.9	0.0	-0.32	1.15	0.67	0.62	1.85	11423	1498	6	0	1	0	0	logfile
✔	9FAA	50270	2025-01-15	2024-05-10	3.6	3.34	3.60	3.9	0.010	1.10	0.0	0.05	11.73	0.01	2.020	10.96	0.00	1.7	98.3	0.0	-4.21	0.52	0.75	3.32	3.8	0.003	0.63	0.0	0.05	13.21	0.00	2.476	6.39	1.43	5.9	94.1	0.0	-4.01	1.11	0.52	0.75	2.71	8695	590	10	0	5	0	4235	logfile
✔	9FAB	50271	2025-01-15	2024-05-10	3.9	3.54	3.80	3.6	0.010	1.57	0.0	0.07	11.24	0.01	2.042	7.97	0.00	1.7	98.3	0.0	-4.50	0.44	0.68	2.55	3.6	0.003	0.62	0.0	0.04	14.49	0.00	2.536	5.08	2.27	7.7	92.3	0.0	-4.95	1.31	0.46	0.70	2.17	8595	585	10	0	5	0	4190	logfile
✔	9FAC	50272	2025-01-15	2024-05-10	3.9	3.38	3.90	4.3	0.007	1.17	0.0	0.07	11.94	0.01	2.226	11.78	0.00	3.8	96.2	0.0	-4.35	0.47	0.63	2.06	3.8	0.006	1.19	1.0	0.06	15.20	0.01	2.413	12.24	2.68	8.2	91.7	0.2	-4.20	1.96	0.48	0.66	1.70	8595	585	10	0	5	0	4190	logfile
✔	9BQV	44825	2025-01-22	2024-05-10	3.2	3.93	3.27	3.7	0.021	1.35	2.0	0.07	14.53	0.01	2.156	7.50	0.00	5.9	93.9	0.2	-2.27	0.86	0.82	2.67	3.7	0.003	0.57	0.0	0.04	15.80	0.00	2.502	5.56	1.26	2.7	97.1	0.2	1.68	1.18	0.88	0.86	2.13	18697	2316	2	0	0	0	0	logfile
✔	8ZHG	60102	2025-01-14	2024-05-10	3.51	3.69	3.44	3.7	0.003	0.66	0.0	0.04	17.55	0.01	2.273	4.79	1.11	4.3	95.7	0.0	-1.47	0.61	0.72	1.21	3.6	0.004	0.67	0.0	0.04	17.66	0.00	2.459	8.50	4.71	6.4	93.6	0.0	-1.38	1.98	0.65	0.79	1.53	3326	425	4	0	2	0	0	logfile
✔	8ZH8	60096	2025-01-16	2024-05-10	3.19	3.97	3.21	3.6	0.003	0.67	0.0	0.04	12.78	0.00	2.207	11.98	0.10	2.9	97.1	0.0	0.57	0.68	0.68	1.06	3.7	0.003	0.72	0.0	0.04	16.34	0.00	2.495	10.82	2.39	3.7	96.2	0.1	0.75	0.96	0.70	0.76	0.75	10048	1316	8	0	1	0	0	logfile
✔	8ZGT	60090	2025-01-16	2024-05-09	2.96	3.17	2.99	3.2	0.004	0.79	0.0	0.05	18.71	0.01	2.251	2.24	4.14	4.9	95.0	0.1	-0.71	0.65	0.81	3.12	3.2	0.003	0.59	0.0	0.05	17.42	0.00	2.531	3.81	3.03	4.3	95.6	0.1	1.03	0.32	0.62	0.80	2.83	8915	1077	13	0	14	0	0	logfile
✔	8ZGS	60089	2025-01-16	2024-05-09	3.04	3.27	3.08	3.3	0.007	0.75	0.0	0.05	18.16	0.01	2.217	6.51	0.61	4.3	95.7	0.0	0.87	0.62	0.79	2.99	3.3	0.003	0.58	0.0	0.04	17.14	0.00	2.437	3.81	3.73	4.5	95.5	0.0	1.23	0.31	0.64	0.81	2.77	8915	1077	13	0	14	0	0	logfile
✔	9F9P	50258	2025-01-14	2024-05-08	2.25	2.07	2.32	2.2	0.012	1.73	18.0	0.09	16.33	0.02	1.949	2.09	4.39	2.6	97.0	0.4	-1.54	0.83	0.89	6.00	2.1	0.003	0.68	1.0	0.05	16.88	0.00	2.125	2.84	1.64	1.7	98.3	0.0	1.55	0.52	0.80	0.87	5.14	49596	6272	56	0	0	1074	0	logfile
✔	8ZFL	60064	2025-01-21	2024-05-08	2.61	2.71	2.56	2.8	0.003	0.51	0.0	0.04	16.53	0.00	2.236	3.12	0.69	2.1	97.9	0.0	1.07	0.69	0.87	4.20	2.7	0.003	0.65	0.0	0.05	16.90	0.00	2.569	2.65	2.29	2.3	97.7	0.0	2.37	0.54	0.72	0.89	4.33	17070	2060	20	0	25	0	0	logfile
✔	9F9T	50260	2025-01-14	2024-05-08	2.31	2.10	2.35	2.2	0.014	2.03	68.0	0.10	17.00	0.02	2.135	4.79	5.78	4.0	95.5	0.5	-2.67	0.81	0.87	5.46	2.1	0.004	0.70	0.0	0.05	17.11	0.00	2.446	4.08	2.88	2.1	97.9	0.0	1.00	1.27	0.78	0.85	5.08	49724	6266	56	0	0	1232	0	logfile
✔	9BP6	44762	2025-01-19	2024-05-07	3.1	3.37	3.02	3.3	0.005	0.88	0.0	0.05	16.03	0.01	1.963	3.03	0.14	2.7	97.3	0.0	0.29	0.66	0.75	3.00	3.3	0.004	0.61	0.0	0.04	17.21	0.00	1.911	5.73	2.41	2.2	97.8	0.0	0.56	0.71	0.77	0.85	3.12	13631	1732	8	0	8	0	0	logfile
✔	8ZEK	60037	2025-01-18	2024-05-06	3.15	3.85	3.17	3.5	0.003	0.68	0.0	0.04	17.29	0.00	2.266	9.27	1.29	3.0	97.0	0.0	0.39	0.69	0.53	1.18	3.5	0.003	0.64	0.0	0.04	18.14	0.00	2.569	9.09	2.42	3.1	96.9	0.0	0.49	1.08	0.78	0.82	1.44	11560	1426	3	0	0	0	0	logfile
✔	8ZEE	60026	2025-01-23	2024-05-06	2.9	2.66	2.99	3.3	0.007	1.19	0.0	0.04	18.03	0.01	2.080	5.25	0.00	2.7	97.2	0.1	1.55	0.78	0.82	2.75	3.3	0.003	0.57	0.0	0.04	16.82	0.00	2.343	5.55	1.47	3.1	96.8	0.0	1.84	0.40	0.79	0.85	2.48	20218	2101	26	0	70	0	0	logfile
✔	8ZE2	60021	2025-01-18	2024-05-04	2.57	3.08	2.65	3.0	0.008	0.84	0.0	0.05	17.75	0.01	2.033	21.00	0.56	5.6	94.2	0.3	-1.29	0.61	0.72	1.22	3.0	0.004	0.88	0.0	0.05	17.40	0.01	2.349	15.92	2.82	5.4	94.6	0.0	0.41	0.52	0.54	0.72	1.33	12972	1568	8	0	8	0	0	logfile
✔	8ZE3	60022	2025-01-18	2024-05-04	3.17	3.37	3.22	3.5	0.004	0.68	0.0	0.04	19.03	0.00	2.064	9.22	2.88	3.8	96.2	0.0	1.13	0.51	0.77	1.87	3.4	0.005	0.87	0.0	0.04	18.14	0.00	1.999	9.43	3.94	3.5	96.5	0.0	2.49	0.36	0.57	0.82	1.57	12072	1496	8	0	4	0	0	logfile

• ← previous
• Page 18 of 550
• next →