Table showing results for January 2025

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8ZLP	60232	2025-01-13	2024-05-20	3.5	3.09	3.05	3.4	0.007	0.55	0.0	0.05	12.26	0.00	2.368	4.84	0.00	4.2	95.8	0.0	-4.52	0.48	0.91	4.59	3.4	0.007	0.63	0.0	0.05	14.80	0.00	2.604	4.96	3.43	6.2	93.8	0.0	-3.12	1.91	0.46	0.91	4.12	4116	588	6	0	6	0	0	logfile
✔	9FEF	50340	2025-01-17	2024-05-19	2.98	3.19	3.00	3.2	0.008	0.83	1.0	0.05	16.73	0.01	2.173	6.86	0.58	5.7	94.0	0.3	0.09	0.74	0.86	2.49	3.2	0.003	0.67	0.0	0.04	16.64	0.01	2.562	5.14	2.56	6.2	93.8	0.0	0.50	0.93	0.66	0.86	2.65	11192	1502	5	0	0	0	0	logfile
✔	8ZL9	60223	2025-01-14	2024-05-17	4.36	4.49	4.31	4.4	0.005	1.01	1.0	0.06	14.25	0.01	2.243	9.31	0.14	7.6	92.0	0.4	-2.34	0.56	0.51	—	4.4	0.003	0.75	0.0	0.05	14.20	0.01	2.476	17.86	0.14	10.2	89.7	0.1	-2.10	1.26	0.58	0.55	—	6644	838	5	0	0	0	0	logfile
✔	8ZL9	38897	2025-01-14	2024-05-17	4.36	4.49	4.31	4.4	0.005	1.01	1.0	0.06	14.25	0.01	2.243	9.31	0.14	7.6	92.0	0.4	-2.34	0.56	0.51	—	4.4	0.003	0.75	0.0	0.05	14.20	0.01	2.476	17.86	0.14	10.2	89.7	0.1	-2.10	1.26	0.58	0.55	—	6644	838	5	0	0	0	0	logfile
✔	9BU6	44901	2025-01-21	2024-05-16	3.65	4.03	3.71	4.0	0.004	0.62	1.0	0.04	15.97	0.01	1.900	5.79	2.88	4.0	95.8	0.3	-1.50	0.74	0.82	2.49	4.0	0.005	0.93	2.0	0.07	17.28	0.01	2.239	4.21	3.47	5.9	93.9	0.2	-1.36	1.21	0.76	0.84	1.93	17439	2193	24	0	24	0	0	logfile
✔	9FD2	50325	2025-01-15	2024-05-16	3.4	2.22	—	1.5	0.004	0.61	0.0	0.04	18.71	0.01	1.905	12.64	0.38	4.0	96.0	0.0	-0.24	0.72	0.73	2.19	1.5	0.004	0.64	0.0	0.04	19.13	0.00	1.948	11.09	4.73	4.4	95.6	0.0	-0.11	0.33	0.75	0.77	2.18	51949	6232	30	104	11	0	0	logfile
✔	9FCJ	50317	2025-01-13	2024-05-15	2.7	2.89	2.64	2.9	0.003	0.55	0.0	0.04	16.44	0.00	2.213	4.76	0.56	1.6	98.4	0.0	0.06	0.59	0.86	3.47	2.9	0.003	0.58	0.0	0.04	17.11	0.00	2.568	5.08	2.23	1.9	98.1	0.0	1.51	0.42	0.52	0.84	2.99	3174	389	5	0	2	29	0	logfile
✔	9BTU	44896	2025-01-20	2024-05-15	3.68	4.36	4.03	4.0	0.006	0.90	0.0	0.05	15.43	0.01	2.429	1.63	0.13	3.5	96.5	0.0	-2.60	0.74	0.76	2.56	4.0	0.005	0.63	0.0	0.04	13.22	0.00	2.395	6.60	0.54	3.6	96.4	0.0	-0.48	0.68	0.74	0.76	2.58	14283	837	10	0	204	0	6422	logfile
✔	8ZJD	60141	2025-01-15	2024-05-14	3.06	3.48	3.18	3.4	0.004	0.67	0.0	0.05	14.50	0.00	2.200	6.08	0.54	3.3	96.7	0.0	0.74	0.63	0.83	2.57	3.4	0.003	0.60	0.0	0.04	15.65	0.00	2.470	5.57	2.27	3.4	96.6	0.0	0.96	0.84	0.60	0.81	2.48	8820	1144	6	0	0	0	0	logfile
✔	8ZJF	60143	2025-01-17	2024-05-14	2.7	2.89	2.81	2.9	0.003	0.65	0.0	0.04	16.73	0.00	2.127	9.93	2.50	7.2	92.8	0.0	-1.43	0.59	0.69	1.29	2.9	0.003	0.67	0.0	0.04	16.80	0.00	2.166	7.24	2.67	6.4	93.6	0.0	-1.23	1.68	0.69	0.83	2.54	10917	1419	4	0	6	0	0	logfile
✔	9BT8	44881	2025-01-14	2024-05-14	3.34	3.52	3.31	3.5	0.005	0.64	0.0	0.04	16.43	0.00	2.269	6.88	0.32	3.0	97.0	0.0	-0.41	0.74	0.85	2.56	3.5	0.003	0.59	0.0	0.04	17.06	0.00	2.499	6.09	4.35	3.0	97.0	0.0	-0.38	0.32	0.73	0.84	2.10	5712	728	6	0	0	0	0	logfile
✔	8ZJE	60142	2025-01-15	2024-05-14	3.07	3.62	3.23	3.6	0.005	0.71	0.0	0.05	14.59	0.01	2.202	5.20	0.33	3.9	96.1	0.0	1.20	0.57	0.80	3.04	3.5	0.003	0.59	0.0	0.04	15.77	0.00	2.533	5.72	2.63	3.0	97.0	0.0	1.20	0.46	0.54	0.78	2.33	8743	1135	7	0	3	0	0	logfile
✔	9BSV	44873	2025-01-16	2024-05-13	3.1	3.64	3.06	3.5	0.005	0.71	1.0	0.06	19.52	0.01	1.819	7.83	0.69	4.2	95.1	0.7	-0.72	0.81	0.89	4.06	3.5	0.003	0.60	0.0	0.04	16.02	0.00	2.393	4.18	1.19	4.2	95.5	0.3	-0.49	0.37	0.77	0.87	3.91	9879	1248	10	0	21	0	0	logfile
✔	9BSS	44871	2025-01-26	2024-05-13	3.1	3.76	3.25	3.2	0.003	0.68	2.0	0.04	25.31	0.00	1.028	9.47	0.68	4.9	95.0	0.1	-1.24	0.86	0.88	2.49	3.2	0.005	0.70	0.0	0.04	24.85	0.00	2.041	7.77	3.14	5.3	94.7	0.0	-1.03	0.39	0.86	0.90	2.51	81609	3098	26	2684	3	0	0	logfile
✔	9BSU	44872	2025-01-17	2024-05-13	3.36	3.84	3.35	3.7	0.004	0.78	0.0	0.06	17.46	0.01	2.093	8.78	0.19	6.0	93.7	0.2	-1.72	0.85	0.83	2.90	3.7	0.005	0.70	0.0	0.05	14.86	0.01	2.396	6.25	1.31	6.3	93.5	0.2	-0.86	0.47	0.82	0.86	2.65	10225	1287	8	0	16	0	0	logfile
✔	9BSL	44869	2025-01-24	2024-05-13	3.1	3.75	3.24	3.3	0.003	0.67	2.0	0.04	24.74	0.00	1.028	8.31	0.73	4.7	95.2	0.1	-1.21	0.84	0.83	1.21	3.3	0.003	0.65	0.0	0.04	24.24	0.00	2.098	6.29	2.87	4.4	95.6	0.0	-0.77	1.58	0.86	0.89	2.07	75353	3032	24	2414	3	0	0	logfile
✔	9BRY	44845	2025-01-25	2024-05-12	3.6	3.97	3.81	4.0	0.005	0.88	0.0	0.04	16.14	0.01	2.423	5.08	2.88	4.2	95.8	0.0	-0.33	0.59	0.66	0.71	4.0	0.003	0.76	0.0	0.04	17.04	0.00	2.496	12.21	4.46	4.2	95.7	0.0	0.58	4.47	0.58	0.67	0.63	23530	3066	20	0	12	0	0	logfile
✔	9BS0	44849	2025-01-26	2024-05-12	3.3	4.51	3.72	3.3	0.005	0.79	1.0	0.04	25.86	0.00	1.095	14.64	0.55	7.7	92.2	0.1	-2.49	0.88	0.85	1.33	3.3	0.003	0.68	0.0	0.04	25.40	0.00	2.009	10.85	5.36	5.5	94.5	0.0	-1.18	1.03	0.88	0.87	1.27	81446	2867	26	2789	2	0	0	logfile
✔	8ZHo	60110	2025-01-19	2024-05-11	3.54	3.81	3.50	3.8	0.003	0.54	0.0	0.04	15.24	0.00	2.273	4.14	0.62	3.8	96.2	0.0	-0.09	0.68	0.66	1.28	3.7	0.005	0.66	0.0	0.05	15.74	0.00	2.436	9.39	2.89	6.1	93.9	0.0	-0.32	1.15	0.67	0.62	1.85	11423	1498	6	0	1	0	0	logfile
✔	9BRA	44839	2025-01-21	2024-05-11	4.3	4.67	4.38	4.3	0.005	0.81	1.0	0.05	13.34	0.01	2.297	4.23	0.10	5.2	94.8	0.0	-0.52	0.70	0.71	—	4.3	0.004	0.71	0.0	0.04	13.73	0.00	2.324	14.85	0.00	4.6	95.4	0.0	0.47	1.26	0.73	0.81	—	66852	8554	33	0	0	0	0	logfile

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