Table showing results for January 2025

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	9C0J	45086	2025-01-14	2024-05-25	3.17	2.92	3.11	3.2	0.005	1.02	0.0	0.05	22.01	0.01	2.099	0.65	0.80	1.2	98.8	0.0	-0.50	0.69	0.87	5.25	3.2	0.004	0.63	0.0	0.04	22.01	0.00	1.976	3.00	2.68	1.9	98.1	0.0	0.97	0.37	0.70	0.89	4.70	7010	425	5	164	3	0	0	logfile
✔	9C0C	45079	2025-01-16	2024-05-25	3.41	3.58	3.44	3.5	0.003	0.58	0.0	0.04	14.86	0.00	2.206	8.91	0.58	2.1	97.9	0.0	1.80	0.69	0.73	1.56	3.5	0.003	0.53	0.0	0.04	16.02	0.00	2.514	6.65	2.32	1.4	98.6	0.0	1.94	1.25	0.83	0.87	1.59	53970	7336	14	0	0	0	0	logfile
✔	9C0D	45080	2025-01-17	2024-05-25	3.97	4.23	4.01	4.0	0.003	0.56	0.0	0.04	13.21	0.00	2.222	10.41	0.08	3.3	96.5	0.2	1.73	0.82	0.75	0.31	4.0	0.005	0.75	4.0	0.04	14.73	0.00	2.404	8.63	1.31	4.0	96.0	0.0	1.40	1.25	0.84	0.84	0.26	54530	7336	14	0	0	0	0	logfile
✔	9FGU	50428	2025-01-13	2024-05-25	4.3	4.49	4.25	4.3	0.003	0.72	0.0	0.05	13.96	0.00	2.123	19.81	0.29	4.9	95.1	0.0	-1.32	0.75	0.70	—	4.3	0.003	0.74	0.0	0.05	13.56	0.00	2.535	13.52	0.00	6.1	93.9	0.0	-1.56	1.04	0.76	0.71	—	3241	413	3	0	1	0	0	logfile
✔	9FGR	50418	2025-01-13	2024-05-25	4.0	4.21	3.96	4.1	0.003	0.58	0.0	0.04	12.55	0.00	2.176	8.75	0.00	6.4	93.6	0.0	-1.53	0.76	0.82	—	4.1	0.003	0.65	0.0	0.04	14.72	0.00	2.582	7.48	2.90	6.4	93.6	0.0	-1.27	1.00	0.77	0.82	—	3209	412	3	0	1	1	0	logfile
✔	9FGT	50424	2025-01-13	2024-05-25	3.8	4.00	3.78	4.0	0.005	0.70	0.0	0.05	14.86	0.00	2.094	7.67	0.00	7.8	92.2	0.0	-1.56	0.72	0.81	2.12	3.9	0.004	0.67	0.0	0.05	15.43	0.00	2.459	6.10	1.93	6.9	93.1	0.0	-1.65	0.43	0.72	0.80	2.01	2921	373	3	0	1	0	0	logfile
✔	9BZ8	45056	2025-01-22	2024-05-24	3.0	3.43	2.93	3.3	0.002	0.51	0.0	0.04	16.19	0.00	2.029	7.04	2.73	2.2	97.8	0.0	2.18	0.77	0.85	2.21	3.3	0.004	0.70	0.0	0.04	17.09	0.00	2.582	6.12	3.75	1.6	98.4	0.0	2.15	0.59	0.73	0.84	2.42	18277	2254	7	0	0	0	0	logfile
✔	9BZ7	45055	2025-01-21	2024-05-24	2.9	3.39	2.96	3.3	0.002	0.54	0.0	0.04	15.79	0.00	2.029	8.39	1.79	4.1	95.9	0.0	1.78	0.73	0.86	1.96	3.3	0.003	0.67	0.0	0.04	16.14	0.00	2.507	6.68	2.47	5.0	95.0	0.0	2.12	1.15	0.72	0.86	1.85	16961	2086	7	0	0	0	0	logfile
✔	9BZ0	45050	2025-01-16	2024-05-24	1.9	2.09	—	1.5	0.009	0.98	0.0	0.07	14.54	0.01	1.902	2.82	0.29	3.6	96.4	0.0	-0.82	0.71	0.67	3.22	1.5	0.003	0.64	0.0	0.04	17.59	0.00	1.927	5.86	1.70	2.4	97.6	0.0	0.60	1.31	0.81	0.81	3.33	54687	6636	32	94	12	2	0	logfile
✔	8ZMY	60262	2025-01-15	2024-05-24	2.9	2.88	2.74	3.0	0.010	0.91	0.0	0.05	15.08	0.00	2.203	20.23	0.00	4.2	95.8	0.0	-4.52	0.51	0.79	2.59	2.9	0.007	0.95	0.0	0.05	17.96	0.00	2.515	6.34	3.80	7.7	92.3	0.0	-2.93	2.47	0.59	0.91	3.97	8652	1176	19	0	27	0	0	logfile
✔	8ZMS	60255	2025-01-13	2024-05-23	3.7	3.97	3.83	4.0	0.007	1.15	0.0	0.05	9.68	0.01	2.349	3.51	0.00	5.0	95.0	0.0	-3.71	0.44	0.76	2.35	4.0	0.004	0.78	0.0	0.04	14.03	0.00	2.493	9.53	1.63	2.4	97.6	0.0	0.89	1.07	0.45	0.76	0.99	2920	386	2	0	1	0	0	logfile
✔	9FFF	50355	2025-01-20	2024-05-23	3.68	4.27	3.58	2.7	0.003	0.65	0.0	0.04	20.68	0.00	2.128	11.90	0.67	4.4	95.5	0.1	0.95	0.83	0.72	0.32	2.8	0.003	0.66	0.0	0.04	20.82	0.00	2.060	10.54	3.36	3.9	96.0	0.0	1.26	1.24	0.83	0.72	0.15	15045	2069	4	65	0	0	0	logfile
✔	9BXo	45007	2025-01-14	2024-05-22	3.0	2.93	2.88	3.0	0.011	1.74	0.0	0.09	12.75	0.01	2.020	23.59	0.00	4.7	95.3	0.0	-1.64	0.43	0.82	5.05	2.9	0.004	0.61	0.0	0.05	15.81	0.00	2.323	3.63	1.49	1.8	98.2	0.0	-2.06	0.88	0.48	0.87	4.67	7182	462	6	0	0	0	3654	logfile
✔	9BXi	45005	2025-01-14	2024-05-22	2.7	2.84	2.60	2.9	0.010	1.61	0.0	0.08	10.28	0.01	1.231	13.85	0.00	6.7	93.3	0.0	-1.83	0.46	0.86	5.10	2.9	0.004	0.56	0.0	0.05	15.93	0.00	2.479	2.93	1.49	6.4	93.6	0.0	-2.06	1.67	0.46	0.89	4.13	7182	462	6	0	0	0	3654	logfile
✔	9FFB	50353	2025-01-22	2024-05-22	3.59	4.32	3.49	3.6	0.013	0.95	0.0	0.06	20.15	0.01	2.015	13.43	0.16	6.4	93.5	0.0	-0.48	0.87	0.81	0.50	3.6	0.013	0.82	0.0	0.04	20.39	0.00	2.006	13.47	4.06	6.3	93.7	0.0	-0.08	0.39	0.87	0.82	0.29	17255	2066	4	42	0	0	0	logfile
✔	9BXR	45009	2025-01-14	2024-05-22	3.2	2.90	3.18	3.3	0.011	1.87	0.0	0.09	11.16	0.01	0.991	32.81	0.00	6.7	92.0	1.3	-2.61	0.36	0.73	3.45	3.1	0.003	0.65	0.0	0.05	15.11	0.00	2.402	2.51	1.99	6.4	93.6	0.0	-2.70	1.26	0.38	0.78	2.64	7184	462	6	0	0	0	3656	logfile
✔	9BXQ	45008	2025-01-14	2024-05-22	3.1	3.01	2.97	3.2	0.011	1.84	0.0	0.09	10.87	0.01	1.454	27.94	0.00	6.7	93.3	0.0	-2.37	0.30	0.68	3.66	3.2	0.004	0.65	0.0	0.05	13.40	0.00	2.489	3.91	0.25	6.4	93.6	0.0	-2.97	1.24	0.35	0.78	4.99	7182	462	6	0	0	0	3654	logfile
✔	9BWT	44979	2025-01-16	2024-05-21	2.5	2.72	2.60	2.8	0.006	0.71	0.0	0.04	17.53	0.00	1.847	23.32	2.72	4.2	95.6	0.2	1.32	0.47	0.79	3.62	2.8	0.003	0.59	0.0	0.04	17.42	0.00	2.502	6.58	2.14	3.8	96.1	0.1	1.29	0.42	0.62	0.88	4.03	9955	1271	5	0	3	6	0	logfile
✔	9BW1	44944	2025-01-13	2024-05-20	3.65	2.48	3.78	2.0	0.004	0.65	1.0	0.04	21.27	0.01	1.917	13.62	1.28	4.1	95.6	0.3	-0.53	0.73	0.70	1.38	2.0	0.004	0.61	0.0	0.04	21.27	0.00	1.888	10.18	3.32	3.3	96.6	0.0	0.14	0.88	0.72	0.67	1.42	47283	5132	38	272	20	7	0	logfile
✔	8ZLo	60231	2025-01-14	2024-05-20	3.1	2.98	2.81	3.3	0.015	1.52	0.0	0.08	17.15	0.01	2.063	28.08	0.00	9.4	90.6	0.0	-4.08	0.25	0.57	3.84	3.1	0.006	0.98	0.0	0.05	14.91	0.00	2.600	9.98	3.95	10.1	89.9	0.0	-4.03	1.95	0.52	0.88	3.30	4816	660	18	0	10	0	0	logfile

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