Table showing results for January 2025

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8ZPS	60353	2025-01-15	2024-05-31	2.97	2.45	2.77	3.0	0.002	0.54	0.0	0.04	9.77	0.00	1.744	8.01	1.06	2.4	97.6	0.0	1.49	0.49	0.65	1.55	2.9	0.003	0.61	0.0	0.04	14.95	0.00	2.357	7.44	2.77	3.2	96.8	0.0	1.12	1.40	0.62	0.78	2.41	8848	1135	7	0	1	0	0	logfile
✔	8ZPW	60365	2025-01-16	2024-05-31	3.0	3.15	2.95	3.2	0.003	0.53	0.0	0.04	15.06	0.00	2.043	6.26	1.19	2.0	98.0	0.0	1.19	0.78	0.87	3.54	3.2	0.003	0.55	0.0	0.04	15.91	0.00	2.592	7.14	1.39	1.7	98.3	0.0	1.27	0.41	0.78	0.87	3.08	9252	1145	4	0	4	0	0	logfile
✔	9FJU	50516	2025-01-20	2024-05-31	3.84	4.15	3.89	4.0	0.004	0.61	0.0	0.04	18.81	0.00	1.705	9.90	0.18	2.1	97.9	0.0	0.15	0.82	0.83	1.83	4.0	0.003	0.71	0.0	0.05	17.31	0.00	1.932	9.24	3.35	3.4	96.6	0.0	0.05	0.42	0.83	0.83	1.70	15968	2010	22	0	24	0	0	logfile
✔	8ZPP	60351	2025-01-13	2024-05-30	3.6	3.76	3.28	3.7	0.008	0.75	0.0	0.05	12.66	0.00	2.241	12.88	0.00	4.1	95.9	0.0	-0.26	0.64	0.77	2.55	3.7	0.003	0.69	0.0	0.05	16.45	0.00	2.495	10.68	4.27	3.9	96.1	0.0	-0.62	1.20	0.65	0.77	1.94	3266	419	3	0	0	0	0	logfile
✔	9C21	45135	2025-01-21	2024-05-30	3.4	4.07	3.71	4.0	0.005	0.71	6.0	0.05	15.19	0.01	2.183	12.52	1.42	4.3	95.7	0.0	0.80	0.73	0.83	1.64	3.9	0.002	0.57	0.0	0.04	15.19	0.00	2.531	8.97	3.31	2.9	97.1	0.0	1.48	1.48	0.67	0.79	1.63	16704	2226	6	0	0	0	0	logfile
✔	9C2A	45152	2025-01-15	2024-05-30	2.74	2.08	2.74	1.9	0.008	0.94	0.0	0.06	12.74	0.01	2.025	6.15	0.00	2.6	97.4	0.0	-1.18	0.75	0.77	4.66	1.9	0.004	0.53	0.0	0.04	14.45	0.00	2.513	3.88	3.16	2.2	97.8	0.0	0.59	0.42	0.78	0.81	4.46	7833	933	12	0	21	102	0	logfile
✔	9C2B	45153	2025-01-15	2024-05-30	2.42	2.65	2.43	2.7	0.007	0.98	0.0	0.06	18.26	0.01	2.161	3.71	0.00	2.1	97.9	0.0	0.27	0.67	0.85	4.42	2.7	0.003	0.59	0.0	0.05	16.95	0.00	1.907	3.14	1.81	1.2	98.8	0.0	1.30	0.32	0.69	0.87	3.91	8208	990	15	0	24	141	0	logfile
✔	8ZPB	60331	2025-01-17	2024-05-29	2.6	2.83	2.61	2.9	0.005	0.56	0.0	0.04	15.80	0.00	1.921	6.01	1.08	1.7	98.3	0.0	0.89	0.61	0.80	4.62	2.9	0.004	0.52	0.0	0.04	15.59	0.00	2.025	3.85	1.61	1.8	98.2	0.0	1.47	1.34	0.60	0.80	4.76	10676	667	4	0	5	54	5257	logfile
✔	9C1U	45130	2025-01-13	2024-05-29	2.31	2.35	2.46	2.4	0.004	0.47	0.0	0.05	10.27	0.00	2.112	2.84	0.00	0.3	99.7	0.0	0.19	0.71	0.87	6.57	2.4	0.004	0.62	0.0	0.05	14.87	0.00	2.586	8.97	4.17	0.0	100.0	0.0	0.25	0.44	0.68	0.89	6.12	2376	312	12	0	0	0	0	logfile
✔	8ZP9	60330	2025-01-23	2024-05-29	2.8	2.19	2.89	2.0	0.003	0.63	0.0	0.04	20.46	0.00	2.098	10.91	2.60	6.0	93.8	0.1	0.25	0.78	0.78	2.93	1.9	0.005	0.69	0.0	0.04	20.34	0.00	2.313	9.33	4.00	6.2	93.8	0.1	-0.07	0.48	0.80	0.81	2.88	19297	2317	9	74	0	0	0	logfile
✔	8ZoY	60322	2025-01-17	2024-05-29	2.5	2.76	2.53	2.8	0.007	0.65	0.0	0.04	15.32	0.01	1.956	6.93	1.07	2.0	98.0	0.0	0.87	0.62	0.81	4.94	2.8	0.004	0.54	0.0	0.04	15.19	0.00	2.374	3.84	0.71	2.3	97.7	0.0	1.58	0.41	0.61	0.81	4.59	10701	666	4	0	3	70	5260	logfile
✔	8ZNR	60279	2025-01-24	2024-05-28	2.9	2.29	2.94	2.0	0.007	1.17	0.0	0.07	18.22	0.01	2.197	6.59	1.40	6.6	93.0	0.4	-3.03	0.80	0.82	3.32	2.0	0.005	0.68	0.0	0.04	19.10	0.00	2.375	7.89	2.84	5.0	94.9	0.1	-0.72	0.96	0.81	0.83	3.11	22605	2607	11	91	0	0	0	logfile
✔	8ZoL	60297	2025-01-23	2024-05-28	2.55	2.26	2.64	1.8	0.005	0.71	0.0	0.05	19.60	0.00	1.968	10.10	1.64	8.3	91.2	0.5	-0.67	0.72	0.67	1.91	2.0	0.004	0.68	0.0	0.04	19.54	0.00	2.435	8.51	3.13	7.5	92.3	0.2	-0.50	0.51	0.75	0.72	1.94	19451	2377	9	59	0	0	0	logfile
✔	9FHB	50444	2025-01-14	2024-05-27	3.87	4.06	3.87	4.0	0.005	0.96	0.0	0.05	15.86	0.01	2.140	16.76	3.25	4.1	95.1	0.8	-0.41	0.70	0.77	1.38	4.0	0.003	0.70	0.0	0.04	16.65	0.00	2.079	8.61	3.53	4.1	95.8	0.1	1.02	1.18	0.71	0.79	0.90	6751	862	8	0	7	0	0	logfile
✔	8ZND	60268	2025-01-13	2024-05-26	2.53	2.67	1.34	2.6	0.007	0.93	0.0	0.05	15.60	0.01	2.392	3.48	0.88	1.7	98.3	0.0	0.95	0.58	0.90	4.78	2.6	0.002	0.50	0.0	0.04	16.84	0.00	2.439	3.79	0.88	1.7	98.3	0.0	1.50	0.83	0.53	0.92	4.22	3334	416	2	0	1	24	0	logfile
✔	8ZNG	60270	2025-01-13	2024-05-26	2.5	2.65	1.33	2.6	0.007	0.92	0.0	0.05	19.32	0.01	2.439	3.91	3.24	2.9	97.1	0.0	1.28	0.60	0.89	4.31	2.6	0.003	0.54	0.0	0.04	17.94	0.00	2.490	4.82	2.35	2.2	97.8	0.0	1.13	0.82	0.55	0.92	4.27	3347	416	2	0	2	16	0	logfile
✔	8ZNC	60267	2025-01-13	2024-05-26	2.41	2.55	1.33	2.5	0.007	0.97	0.0	0.05	19.34	0.01	2.408	6.47	1.76	2.4	97.6	0.0	0.66	0.53	0.90	3.96	2.5	0.003	0.54	0.0	0.04	19.21	0.00	2.452	5.27	1.18	1.7	98.3	0.0	1.33	1.17	0.49	0.90	4.15	3356	416	2	0	3	24	0	logfile
✔	8ZNE	60269	2025-01-13	2024-05-26	2.64	2.76	2.44	2.7	0.005	0.78	0.0	0.05	16.82	0.01	2.472	6.22	2.65	3.1	96.9	0.0	0.47	0.53	0.87	4.39	2.7	0.002	0.53	0.0	0.04	17.95	0.00	2.487	5.16	1.76	3.4	96.6	0.0	1.20	1.31	0.49	0.90	4.26	3312	417	2	0	1	9	0	logfile
✔	8ZNB	60266	2025-01-13	2024-05-26	2.53	2.68	2.16	2.7	0.007	0.95	0.0	0.05	15.55	0.00	2.421	7.24	2.06	1.2	98.8	0.0	0.61	0.55	0.89	4.44	2.7	0.002	0.58	0.0	0.04	17.27	0.00	2.443	6.19	1.18	1.0	99.0	0.0	1.03	0.90	0.51	0.91	3.98	3342	416	2	0	1	21	0	logfile
✔	9C0J	45086	2025-01-14	2024-05-25	3.17	2.92	3.11	3.2	0.005	1.02	0.0	0.05	22.01	0.01	2.099	0.65	0.80	1.2	98.8	0.0	-0.50	0.69	0.87	5.25	3.2	0.004	0.63	0.0	0.04	22.01	0.00	1.976	3.00	2.68	1.9	98.1	0.0	0.97	0.37	0.70	0.89	4.70	7010	425	5	164	3	0	0	logfile

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