Table showing results for January 2025

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	9C4C	45181	2025-01-17	2024-06-04	3.09	3.22	3.10	3.2	0.004	0.71	0.0	0.04	22.35	0.00	1.733	4.00	0.00	0.7	99.3	0.0	-1.20	0.68	0.74	2.96	3.2	0.003	0.57	0.0	0.04	23.01	0.00	2.024	2.52	0.81	1.5	98.5	0.0	1.95	1.14	0.68	0.73	1.88	11490	542	10	77	8	0	5414	logfile
✔	8ZRH	60396	2025-01-15	2024-06-04	3.6	2.84	3.64	2.1	0.007	0.93	0.0	0.05	16.05	0.01	2.383	9.08	1.82	3.8	95.9	0.3	0.45	0.61	0.67	0.80	2.2	0.003	0.82	0.0	0.05	17.01	0.01	2.429	11.41	5.00	5.2	94.7	0.1	-0.08	1.34	0.63	0.72	1.20	8036	1019	8	0	0	0	0	logfile
✔	8ZR5	60392	2025-01-21	2024-06-04	3.31	3.53	3.31	3.6	0.005	0.71	0.0	0.04	15.90	0.00	2.192	5.13	0.23	3.0	97.0	0.0	-0.42	0.59	0.82	2.74	3.6	0.002	0.49	0.0	0.04	16.42	0.00	2.430	2.47	1.72	1.8	98.2	0.0	1.07	0.97	0.62	0.84	2.30	16195	1044	6	0	1	0	8043	logfile
✔	9C4N	45191	2025-01-13	2024-06-04	2.9	2.74	—	3.0	0.013	1.70	0.0	0.06	9.18	0.01	2.779	0.00	0.00	14.3	85.7	0.0	-0.15	0.12	0.70	7.51	3.0	0.060	1.79	1.0	0.22	23.53	0.02	2.477	0.00	25.00	0.0	100.0	0.0	-6.32	1.38	0.19	0.79	5.31	69	9	1	0	0	0	0	logfile
✔	8ZRA	60394	2025-01-18	2024-06-04	3.32	3.61	3.30	3.7	0.006	0.77	0.0	0.05	15.35	0.01	2.251	16.83	0.00	10.4	89.6	0.0	-4.04	0.66	0.82	4.11	3.7	0.003	0.67	0.0	0.05	17.09	0.01	2.569	9.14	3.36	5.0	95.0	0.0	-2.15	0.58	0.67	0.84	4.48	11772	1422	18	0	0	0	0	logfile
✔	9C4F	45184	2025-01-23	2024-06-04	3.2	2.33	3.05	2.3	0.005	0.82	0.0	0.05	13.07	0.01	1.661	9.81	0.30	2.5	97.4	0.1	-0.62	0.39	0.75	4.46	2.2	0.005	0.66	0.0	0.04	16.06	0.00	2.393	7.97	2.42	1.9	98.0	0.0	-0.41	0.66	0.38	0.80	4.07	21560	2774	6	0	0	0	0	logfile
✔	8ZQQ	60388	2025-01-13	2024-06-03	2.5	2.79	2.52	2.8	0.003	0.65	0.0	0.04	16.30	0.00	2.211	2.21	0.25	2.5	97.5	0.0	1.76	0.64	0.87	3.26	2.8	0.003	0.57	0.0	0.04	14.65	0.00	2.205	2.33	1.51	2.1	97.9	0.0	2.17	0.87	0.63	0.86	2.94	3836	492	3	0	6	0	0	logfile
✔	9C4B	45180	2025-01-14	2024-06-03	3.4	3.78	3.57	3.7	0.004	0.73	1.0	0.05	16.50	0.00	1.827	10.64	0.89	5.9	93.3	0.8	-0.46	0.62	0.72	1.52	3.7	0.003	0.56	0.0	0.04	17.01	0.00	2.386	7.04	1.78	6.7	93.0	0.3	-0.41	0.52	0.62	0.72	1.61	6110	393	1	0	0	0	3030	logfile
✔	9C47	45176	2025-01-16	2024-06-03	3.4	3.75	3.55	3.6	0.003	0.55	0.0	0.04	17.24	0.01	1.832	10.72	0.63	6.0	93.5	0.5	0.74	0.74	0.78	1.72	3.6	0.003	0.59	0.0	0.04	17.54	0.00	2.258	8.79	1.99	5.6	94.1	0.3	1.00	1.14	0.74	0.79	1.56	52167	3212	2	0	0	0	26380	logfile
✔	9C45	45175	2025-01-13	2024-06-03	3.2	3.43	3.23	3.5	0.011	1.26	0.0	0.08	11.88	0.01	2.507	0.81	0.00	2.5	97.5	0.0	1.45	0.70	0.85	5.90	3.4	0.005	0.62	0.0	0.05	12.15	0.00	2.574	2.28	2.53	2.5	97.5	0.0	0.54	0.95	0.69	0.90	5.63	3900	496	6	0	9	0	0	logfile
✔	8ZQR	60389	2025-01-13	2024-06-03	3.6	3.82	3.65	3.9	0.005	0.92	2.0	0.06	18.43	0.01	2.229	8.96	0.76	5.8	94.2	0.0	-0.86	0.60	0.80	1.77	3.9	0.003	0.68	0.0	0.04	17.07	0.00	2.578	5.67	3.56	4.0	96.0	0.0	0.80	1.01	0.54	0.80	0.74	3778	486	2	0	3	0	0	logfile
✔	8ZQE	60384	2025-01-15	2024-06-02	2.9	2.31	3.03	2.1	0.004	0.71	0.0	0.05	13.70	0.00	2.169	12.51	0.21	4.5	95.5	0.0	-0.15	0.74	0.75	2.45	2.1	0.004	0.69	0.0	0.04	17.21	0.01	2.405	10.44	2.22	3.4	96.6	0.0	0.05	1.33	0.77	0.81	2.51	8767	1131	6	0	0	0	0	logfile
✔	8ZPS	60353	2025-01-15	2024-05-31	2.97	2.45	2.77	3.0	0.002	0.54	0.0	0.04	9.77	0.00	1.744	8.01	1.06	2.4	97.6	0.0	1.49	0.49	0.65	1.55	2.9	0.003	0.61	0.0	0.04	14.95	0.00	2.357	7.44	2.77	3.2	96.8	0.0	1.12	1.40	0.62	0.78	2.41	8848	1135	7	0	1	0	0	logfile
✔	9C3E	45166	2025-01-17	2024-05-31	3.5	4.21	3.49	3.9	0.005	0.89	0.0	0.05	15.76	0.01	2.140	16.01	1.92	4.2	95.7	0.2	-0.18	0.74	0.79	2.36	3.9	0.003	0.71	0.0	0.05	16.01	0.00	2.484	9.89	5.12	4.3	95.6	0.1	0.44	0.53	0.74	0.80	2.10	10619	1356	15	0	13	0	0	logfile
✔	9FJY	50517	2025-01-20	2024-05-31	3.79	4.12	3.87	4.0	0.004	0.60	0.0	0.04	18.47	0.00	1.723	9.49	0.41	1.7	98.3	0.0	0.26	0.82	0.83	2.23	4.0	0.004	0.70	0.0	0.05	16.85	0.00	1.950	9.59	4.58	2.7	97.3	0.0	0.15	0.97	0.82	0.83	1.71	15968	2010	22	0	24	0	0	logfile
✔	8ZPT	60354	2025-01-16	2024-05-31	2.96	2.53	2.83	3.0	0.002	0.45	0.0	0.04	10.05	0.00	1.974	6.41	0.20	2.2	97.8	0.0	1.57	0.57	0.73	2.45	3.0	0.003	0.64	0.0	0.04	15.49	0.00	2.432	5.81	2.62	2.9	97.1	0.0	0.65	1.78	0.59	0.79	2.50	9151	1162	7	0	1	0	0	logfile
✔	9C3F	45167	2025-01-13	2024-05-31	3.78	4.13	3.80	4.2	0.009	1.27	2.0	0.06	21.43	0.03	2.277	7.47	4.47	3.1	96.9	0.0	1.59	0.53	0.74	0.56	4.2	0.002	0.59	0.0	0.04	18.84	0.00	2.598	6.18	3.68	2.7	97.3	0.0	2.02	0.35	0.52	0.73	0.79	3800	485	2	0	2	0	0	logfile
✔	8ZPV	60355	2025-01-18	2024-05-31	2.9	3.96	3.05	3.6	0.007	0.83	4.0	0.05	17.50	0.00	2.026	14.13	10.22	8.2	91.7	0.1	-2.61	0.81	0.73	0.57	3.5	0.003	0.89	0.0	0.05	17.61	0.00	2.281	10.97	3.00	7.0	92.9	0.1	0.13	1.77	0.86	0.85	1.60	12440	1552	6	0	2	0	0	logfile
✔	9FJM	50506	2025-01-18	2024-05-31	3.65	3.91	3.68	3.9	0.002	0.57	0.0	0.04	16.75	0.00	1.766	8.19	0.24	1.5	98.5	0.0	-0.30	0.74	0.82	2.24	3.9	0.004	0.89	1.0	0.05	17.17	0.00	2.026	8.62	3.39	2.1	97.8	0.1	0.28	0.96	0.75	0.83	1.93	11772	1487	16	0	16	0	0	logfile
✔	9FJo	50507	2025-01-17	2024-05-31	3.05	3.39	3.10	3.4	0.002	0.52	0.0	0.04	15.85	0.00	2.165	5.36	0.24	2.1	97.9	0.0	-0.37	0.68	0.84	2.73	3.4	0.002	0.59	0.0	0.04	16.62	0.00	2.443	5.58	2.37	2.7	97.3	0.0	0.71	0.29	0.68	0.84	2.30	11466	1452	8	0	8	0	0	logfile

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