Table showing results for January 2025

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8ZTR	60470	2025-01-19	2024-06-07	3.26	3.32	3.25	3.3	0.005	0.81	1.0	0.04	17.60	0.00	2.195	7.58	0.45	4.8	95.2	0.1	-0.75	0.61	0.59	1.19	3.3	0.003	0.65	0.0	0.04	18.43	0.00	2.442	10.32	3.43	4.4	95.6	0.0	-0.23	1.13	0.62	0.61	0.74	14072	1694	4	0	0	0	0	logfile
✔	9FMV	50571	2025-01-17	2024-06-07	3.43	2.30	3.33	2.1	0.004	0.65	0.0	0.04	15.23	0.01	2.203	9.66	0.55	3.2	96.8	0.0	1.60	0.75	0.72	1.40	2.1	0.004	0.65	0.0	0.04	16.10	0.01	2.459	7.49	2.12	2.9	97.1	0.0	1.95	0.35	0.75	0.74	1.71	10272	1254	5	0	0	0	0	logfile
✔	8ZSZ	60435	2025-01-14	2024-06-06	3.59	3.78	3.47	3.7	0.017	1.81	9.0	0.09	14.91	0.01	1.624	28.95	2.63	2.4	97.6	0.0	-0.01	0.59	0.75	1.47	3.7	0.004	0.68	0.0	0.04	16.58	0.00	2.029	14.79	4.65	2.6	97.4	0.0	1.54	0.77	0.59	0.75	1.20	4754	630	4	0	8	0	0	logfile
✔	9C58	45207	2025-01-15	2024-06-06	4.7	4.87	4.69	4.8	0.003	0.73	0.0	0.05	10.28	0.00	1.776	1.47	0.00	2.9	97.1	0.0	0.63	0.70	0.62	—	4.7	0.005	0.76	0.0	0.04	6.86	0.00	1.906	3.11	0.00	8.4	91.6	0.0	-1.17	1.56	0.76	0.73	—	7954	1590	6	0	2	0	0	logfile
✔	9C5A	45209	2025-01-20	2024-06-06	4.2	3.06	4.22	4.2	0.014	1.48	0.0	0.07	12.26	0.01	1.887	4.97	0.45	3.5	96.3	0.2	0.19	0.66	0.71	—	2.9	0.003	0.68	0.0	0.05	13.45	0.00	1.837	10.92	0.00	3.8	96.2	0.0	1.01	1.71	0.66	0.72	—	15806	1978	10	0	4	0	0	logfile
✔	9C5Q	45218	2025-01-18	2024-06-06	3.1	3.69	3.23	3.5	0.002	0.57	0.0	0.04	19.49	0.00	2.031	7.40	0.65	8.4	91.5	0.1	-2.00	0.76	0.81	1.49	3.5	0.003	0.59	0.0	0.04	19.68	0.00	2.511	5.81	4.44	9.5	90.3	0.1	-1.20	0.38	0.72	0.77	1.38	12324	1550	4	28	0	0	0	logfile
✔	9C5B	45213	2025-01-21	2024-06-06	4.5	2.95	4.37	4.3	0.013	1.36	0.0	0.07	12.25	0.01	1.940	5.09	0.11	2.1	97.7	0.2	0.47	0.64	0.64	—	4.3	0.003	0.66	0.0	0.04	13.49	0.00	1.864	10.45	0.05	2.8	97.2	0.0	1.39	1.34	0.68	0.66	—	16874	2114	9	0	4	0	0	logfile
✔	9C5C	45214	2025-01-17	2024-06-06	3.6	2.97	3.61	3.9	0.004	0.73	0.0	0.04	15.74	0.00	2.202	20.64	0.08	2.7	97.3	0.0	0.79	0.67	0.57	0.91	3.9	0.004	0.83	0.0	0.04	17.34	0.00	2.399	18.43	3.68	3.7	96.3	0.0	1.03	1.10	0.68	0.68	0.85	11364	1429	4	0	0	0	0	logfile
✔	8ZSB	60410	2025-01-14	2024-06-05	3.26	3.46	3.10	3.5	0.012	1.18	6.0	0.07	14.72	0.01	1.897	11.27	2.28	3.0	97.0	0.0	1.10	0.58	0.78	2.25	3.5	0.004	0.55	0.0	0.04	16.07	0.00	2.031	8.37	2.09	3.8	96.2	0.0	2.40	0.50	0.60	0.82	2.31	4798	614	4	0	2	0	0	logfile
✔	8ZRT	60404	2025-01-13	2024-06-05	3.62	3.79	3.44	3.8	0.003	0.69	0.0	0.04	16.25	0.01	2.227	13.78	0.81	3.1	96.9	0.0	0.00	0.47	0.72	1.94	3.8	0.003	0.70	0.0	0.04	16.77	0.01	2.588	12.27	6.85	3.8	96.2	0.0	1.18	0.34	0.47	0.72	1.82	2322	303	2	0	0	0	0	logfile
✔	8ZRR	60403	2025-01-13	2024-06-05	3.61	2.82	3.14	2.7	0.008	0.99	0.0	0.05	16.46	0.01	1.345	8.98	3.81	3.5	95.7	0.8	0.51	0.58	0.70	1.24	2.7	0.003	0.79	0.0	0.05	16.62	0.00	2.384	7.23	4.04	2.8	97.2	0.0	1.64	0.77	0.59	0.73	1.62	4065	516	4	0	0	0	0	logfile
✔	9FLS	50538	2025-01-21	2024-06-05	3.4	3.63	3.40	3.6	0.018	1.59	7.0	0.08	9.43	0.01	2.021	6.79	0.00	4.2	95.8	0.0	0.44	0.49	0.63	3.84	3.6	0.005	0.62	1.0	0.04	11.63	0.00	2.093	3.78	2.14	2.5	97.5	0.0	0.42	1.62	0.73	0.86	3.95	16604	2359	7	0	0	0	0	logfile
✔	9FLV	50540	2025-01-24	2024-06-05	3.6	3.82	3.60	3.8	0.018	1.89	14.0	0.09	8.99	0.01	1.202	7.43	0.00	1.0	99.0	0.0	1.29	0.76	0.83	2.82	3.8	0.005	0.64	0.0	0.05	12.80	0.01	2.541	5.04	3.17	2.3	97.7	0.0	0.10	0.66	0.77	0.85	3.11	20818	2905	7	0	0	0	0	logfile
✔	8ZSJ	60417	2025-01-15	2024-06-05	2.8	3.25	2.87	3.1	0.005	0.68	0.0	0.05	12.91	0.01	2.216	8.42	0.12	3.4	96.6	0.0	0.88	0.70	0.84	3.96	3.2	0.003	0.56	0.0	0.04	15.62	0.00	2.486	6.86	1.73	2.7	97.3	0.0	1.12	0.99	0.62	0.84	3.31	8118	1035	6	0	1	4	0	logfile
✔	8ZSP	60423	2025-01-15	2024-06-05	3.14	2.39	3.22	3.2	0.008	0.72	0.0	0.05	14.31	0.00	2.247	9.97	0.12	3.2	96.8	0.0	0.24	0.75	0.75	2.72	2.2	0.003	0.61	0.0	0.04	16.23	0.00	2.542	8.15	1.16	2.4	97.6	0.0	0.68	0.92	0.75	0.79	2.29	8076	1033	6	0	1	0	0	logfile
✔	9FLU	50539	2025-01-21	2024-06-05	3.4	3.67	3.38	3.6	0.018	1.52	0.0	0.08	8.06	0.02	2.030	3.67	0.00	1.2	98.8	0.0	1.79	0.76	0.82	3.85	3.6	0.004	0.57	0.0	0.05	11.15	0.00	2.336	4.72	3.55	1.9	98.1	0.0	1.24	1.61	0.73	0.86	3.86	16520	2324	7	0	0	0	0	logfile
✔	9FLX	50542	2025-01-22	2024-06-05	3.6	3.79	3.59	3.8	0.017	1.52	14.0	0.08	9.30	0.01	2.030	6.30	0.00	2.0	98.0	0.0	0.42	0.59	0.65	3.51	3.7	0.003	0.61	0.0	0.04	12.98	0.00	2.197	4.87	3.17	2.1	97.9	0.0	0.19	0.65	0.76	0.87	3.52	17675	2436	7	0	0	0	0	logfile
✔	9C4F	45184	2025-01-23	2024-06-04	3.2	2.33	3.05	2.3	0.005	0.82	0.0	0.05	13.07	0.01	1.661	9.81	0.30	2.5	97.4	0.1	-0.62	0.39	0.75	4.46	2.2	0.005	0.66	0.0	0.04	16.06	0.00	2.393	7.97	2.42	1.9	98.0	0.0	-0.41	0.66	0.38	0.80	4.07	21560	2774	6	0	0	0	0	logfile
✔	8ZR5	60392	2025-01-21	2024-06-04	3.31	3.53	3.31	3.6	0.005	0.71	0.0	0.04	15.90	0.00	2.192	5.13	0.23	3.0	97.0	0.0	-0.42	0.59	0.82	2.74	3.6	0.002	0.49	0.0	0.04	16.42	0.00	2.430	2.47	1.72	1.8	98.2	0.0	1.07	0.97	0.62	0.84	2.30	16195	1044	6	0	1	0	8043	logfile
✔	9C4N	45191	2025-01-13	2024-06-04	2.9	2.74	—	3.0	0.013	1.70	0.0	0.06	9.18	0.01	2.779	0.00	0.00	14.3	85.7	0.0	-0.15	0.12	0.70	7.51	3.0	0.060	1.79	1.0	0.22	23.53	0.02	2.477	0.00	25.00	0.0	100.0	0.0	-6.32	1.38	0.19	0.79	5.31	69	9	1	0	0	0	0	logfile

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